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SummaryGeometryRelated PDB entries

BYD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OANNALsing1.42Å1.43Å
NALCAKsing1.35Å1.34Å
OAMCAKdoub1.22Å1.23Å
CAKCACsing1.48Å1.38Å
CADCACdoub1.40Å1.39ÅAromatic
CADCAEsing1.38Å1.39ÅAromatic
CACCABsing1.40Å1.39ÅAromatic
CAECAFdoub1.40Å1.39ÅAromatic
CABCAAdoub1.38Å1.39ÅAromatic
CAFCAAsing1.40Å1.39ÅAromatic
CAFCAGsing1.48Å1.39Å
OAHCAGdoub1.22Å1.23Å
CAGNAIsing1.35Å1.34Å
NAIOAJsing1.42Å1.43Å
CAAHAAsing1.08Å1.08Å
CABHABsing1.08Å1.08Å
CADHADsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
NAIHAIsing0.97Å1.00Å
NALHALsing0.97Å1.00Å
OAJHAJsing0.97Å0.95Å
OANHANsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OANNALCAK116.9°120.0°
OANNALHAL121.5°120.1°
NALOANHAN109.5°114.0°
NALCAKOAM124.3°120.0°
NALCAKCAC114.5°120.0°
CAKNALHAL121.6°120.0°
OAMCAKCAC121.2°120.0°
CAKCACCAD120.0°120.0°
CAKCACCAB119.4°120.0°
CACCADCAE119.7°120.0°
CADCACCAB120.6°120.0°
CACCADHAD120.2°120.0°
CADCAECAF119.7°120.0°
CAECADHAD120.1°120.0°
CADCAEHAE120.1°120.0°
CACCABCAA119.8°120.0°
CACCABHAB120.1°120.0°
CAECAFCAA120.6°120.0°
CAECAFCAG119.9°120.0°
CAFCAEHAE120.2°120.0°
CABCAACAF119.7°120.0°
CABCAAHAA120.2°120.0°
CAACABHAB120.1°120.0°
CAACAFCAG119.5°120.0°
CAFCAAHAA120.1°120.0°
CAFCAGOAH121.2°120.0°
CAFCAGNAI114.5°120.0°
OAHCAGNAI124.3°120.0°
CAGNAIOAJ116.9°120.0°
CAGNAIHAI121.5°120.0°
OAJNAIHAI121.5°120.1°
NAIOAJHAJ109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OANNALCAKHAL180.0°179.9°
OANNALCAKOAM0.1°0.0°
OANNALCAKCAC179.8°180.0°
NALCAKOAMCAC179.7°180.0°
NALCAKCACCAD106.9°0.1°
NALCAKCACCAB72.9°180.0°
CAKNALOANHAN0.0°180.0°
OAMCAKCACCAD73.4°179.9°
OAMCAKCACCAB106.8°0.0°
OAMCAKNALHAL180.0°179.9°
CAKCACCADCAB179.8°179.9°
CAKCACCADCAE179.8°180.0°
CAKCACCABCAA180.0°179.9°
CAKCACCABHAB0.0°0.1°
CAKCACCADHAD0.2°0.0°
CACCAKNALHAL0.2°0.1°
CACCADCAEHAD180.0°180.0°
CACCADCAECAF0.0°0.2°
CADCACCABCAA0.2°0.0°
CADCACCABHAB179.8°180.0°
CACCADCAEHAE180.0°180.0°
CAECADCACCAB0.0°0.0°
CADCAECAFHAE180.0°179.8°
CADCAECAFCAA0.1°0.6°
CADCAECAFCAG179.8°180.0°
CACCABCAAHAB180.0°180.0°
CACCABCAACAF0.4°0.3°
CACCABCAAHAA179.6°180.0°
CABCACCADHAD180.0°180.0°
CAECAFCAACAB0.3°0.6°
CAECAFCAACAG179.7°179.4°
CAECAFCAGOAH73.7°0.0°
CAECAFCAGNAI106.6°180.0°
CAECAFCAAHAA179.7°179.7°
CAFCAECADHAD180.0°179.7°
CABCAACAFHAA180.0°179.6°
CABCAACAFCAG180.0°179.9°
CAACAFCAGOAH106.6°179.5°
CAACAFCAGNAI73.1°0.5°
CAFCAACABHAB179.7°179.7°
CAACAFCAEHAE179.9°179.7°
CAFCAGOAHNAI179.7°180.0°
CAFCAGNAIOAJ179.9°180.0°
CAGCAFCAAHAA0.0°0.3°
CAGCAFCAEHAE0.2°0.2°
CAFCAGNAIHAI0.2°0.0°
OAHCAGNAIOAJ0.1°0.0°
OAHCAGNAIHAI179.9°180.0°
CAGNAIOAJHAI180.0°180.0°
CAGNAIOAJHAJ0.1°180.0°
HAACAACABHAB0.3°0.0°
HADCADCAEHAE0.1°0.0°
HAINAIOAJHAJ180.0°0.0°
HALNALOANHAN180.0°0.0°

222415

PDB entries from 2024-07-10

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