BVP
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.43Å | |
O3' | H3' | sing | 0.97Å | 0.95Å | |
C3' | C2' | sing | 1.54Å | 1.52Å | |
C3' | C4' | sing | 1.54Å | 1.50Å | |
C3' | H1 | sing | 1.09Å | 1.11Å | |
C2' | C1' | sing | 1.54Å | 1.52Å | |
C2' | H2'1 | sing | 1.09Å | 1.11Å | |
C2' | H2'2 | sing | 1.09Å | 1.11Å | |
C1' | O4' | sing | 1.44Å | 1.44Å | |
C1' | N1 | sing | 1.46Å | 1.53Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
O4' | C4' | sing | 1.45Å | 1.45Å | |
C4' | C5' | sing | 1.53Å | 1.54Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
C5' | O5' | sing | 1.43Å | 1.44Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
O5' | P | sing | 1.61Å | 1.64Å | |
P | O1P | doub | 1.48Å | 1.49Å | |
P | O2P | sing | 1.61Å | 1.50Å | |
P | O3P | sing | 1.61Å | 1.47Å | |
O2P | H2P | sing | 0.97Å | 0.95Å | |
O3P | H3P | sing | 0.97Å | 0.95Å | |
N1 | C6 | sing | 1.37Å | 1.40Å | |
N1 | C2 | sing | 1.34Å | 1.39Å | |
C6 | C5 | doub | 1.37Å | 1.45Å | |
C6 | H6 | sing | 1.08Å | 1.10Å | |
C5 | C5A | sing | 1.48Å | 1.14Å | |
C5 | C4 | sing | 1.47Å | 1.47Å | |
C5A | C5B | doub | 1.33Å | 1.39Å | |
C5A | H5A | sing | 1.08Å | 1.10Å | |
C5B | BR | sing | 1.89Å | 1.98Å | |
C5B | H5B | sing | 1.08Å | 1.10Å | |
C4 | O4 | doub | 1.22Å | 1.26Å | |
C4 | N3 | sing | 1.35Å | 1.38Å | |
N3 | C2 | sing | 1.34Å | 1.37Å | |
N3 | HN3 | sing | 0.97Å | 1.02Å | |
C2 | O2 | doub | 1.22Å | 1.22Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C3' | O3' | H3' | 113.5° | 106.8° |
O3' | C3' | C2' | 113.5° | 110.5° |
O3' | C3' | C4' | 107.7° | 110.5° |
O3' | C3' | H1 | 106.4° | 110.5° |
C2' | C3' | C4' | 104.0° | 104.2° |
C2' | C3' | H1 | 109.9° | 110.5° |
C3' | C2' | C1' | 102.0° | 104.1° |
C3' | C2' | H2'1 | 115.1° | 110.5° |
C3' | C2' | H2'2 | 115.1° | 110.5° |
C4' | C3' | H1 | 115.5° | 110.5° |
C3' | C4' | O4' | 105.1° | 104.7° |
C3' | C4' | C5' | 115.7° | 110.7° |
C3' | C4' | H4' | 107.7° | 110.3° |
C1' | C2' | H2'1 | 115.1° | 110.5° |
C1' | C2' | H2'2 | 115.1° | 110.5° |
C2' | C1' | O4' | 106.3° | 104.8° |
C2' | C1' | N1 | 117.1° | 110.4° |
C2' | C1' | H1' | 106.1° | 110.3° |
H2'1 | C2' | H2'2 | 95.4° | 110.5° |
O4' | C1' | N1 | 108.2° | 110.5° |
O4' | C1' | H1' | 115.4° | 110.4° |
C1' | O4' | C4' | 110.3° | 105.4° |
N1 | C1' | H1' | 104.1° | 110.4° |
C1' | N1 | C6 | 121.4° | 119.3° |
C1' | N1 | C2 | 118.0° | 119.3° |
O4' | C4' | C5' | 107.5° | 110.3° |
O4' | C4' | H4' | 115.9° | 110.3° |
C5' | C4' | H4' | 105.3° | 110.3° |
C4' | C5' | O5' | 111.6° | 109.5° |
C4' | C5' | H5'1 | 111.4° | 109.5° |
C4' | C5' | H5'2 | 111.4° | 109.5° |
O5' | C5' | H5'1 | 111.5° | 109.4° |
O5' | C5' | H5'2 | 111.4° | 109.5° |
C5' | O5' | P | 122.6° | 106.8° |
H5'1 | C5' | H5'2 | 98.9° | 109.4° |
O5' | P | O1P | 108.9° | 109.5° |
O5' | P | O2P | 109.1° | 109.5° |
O5' | P | O3P | 110.3° | 109.5° |
O1P | P | O2P | 109.7° | 109.5° |
O1P | P | O3P | 109.7° | 109.4° |
O2P | P | O3P | 109.1° | 109.5° |
P | O2P | H2P | 109.0° | 106.8° |
P | O3P | H3P | 110.4° | 106.8° |
C6 | N1 | C2 | 120.6° | 121.4° |
N1 | C6 | C5 | 120.7° | 119.5° |
N1 | C6 | H6 | 117.9° | 120.3° |
N1 | C2 | N3 | 119.4° | 121.9° |
N1 | C2 | O2 | 122.2° | 119.1° |
C5 | C6 | H6 | 121.5° | 120.3° |
C6 | C5 | C5A | 131.5° | 120.9° |
C6 | C5 | C4 | 116.9° | 118.3° |
C5A | C5 | C4 | 111.6° | 120.8° |
C5 | C5A | C5B | 128.3° | 120.0° |
C5 | C5A | H5A | 104.7° | 120.0° |
C5 | C4 | O4 | 124.6° | 120.7° |
C5 | C4 | N3 | 117.9° | 118.6° |
C5B | C5A | H5A | 127.0° | 120.0° |
C5A | C5B | BR | 123.7° | 120.0° |
C5A | C5B | H5B | 99.9° | 120.0° |
BR | C5B | H5B | 136.4° | 120.0° |
O4 | C4 | N3 | 117.5° | 120.7° |
C4 | N3 | C2 | 124.5° | 120.3° |
C4 | N3 | HN3 | 118.5° | 119.8° |
C2 | N3 | HN3 | 117.1° | 119.8° |
N3 | C2 | O2 | 118.3° | 119.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C2' | C4' | 116.7° | 118.7° |
O3' | C3' | C2' | H1 | 119.1° | 122.6° |
O3' | C3' | C4' | H1 | 118.7° | 122.6° |
O3' | C3' | C2' | C1' | 81.8° | 118.7° |
O3' | C3' | C2' | H2'1 | 43.5° | 122.7° |
O3' | C3' | C2' | H2'2 | 153.0° | 0.0° |
O3' | C3' | C4' | O4' | 90.3° | 142.5° |
O3' | C3' | C4' | C5' | 151.3° | 98.6° |
O3' | C3' | C4' | H4' | 33.8° | 23.8° |
H3' | O3' | C3' | C2' | 180.0° | 63.3° |
H3' | O3' | C3' | C4' | 65.5° | 178.1° |
H3' | O3' | C3' | H1 | 58.9° | 59.3° |
C2' | C3' | C4' | H1 | 120.6° | 118.7° |
C3' | C2' | C1' | H2'1 | 125.3° | 118.7° |
C3' | C2' | C1' | H2'2 | 125.2° | 118.7° |
C3' | C2' | H2'1 | H2'2 | 120.9° | 122.7° |
C3' | C2' | C1' | O4' | 27.1° | 24.0° |
C3' | C2' | C1' | N1 | 148.1° | 142.9° |
C3' | C2' | C1' | H1' | 96.2° | 94.8° |
C2' | C3' | C4' | O4' | 30.4° | 23.8° |
C2' | C3' | C4' | C5' | 88.0° | 142.7° |
C2' | C3' | C4' | H4' | 154.5° | 94.9° |
C4' | C3' | C2' | C1' | 34.9° | 0.1° |
C4' | C3' | C2' | H2'1 | 160.2° | 118.6° |
C4' | C3' | C2' | H2'2 | 90.3° | 118.8° |
C3' | C4' | O4' | C1' | 13.5° | 40.3° |
C3' | C4' | O4' | C5' | 123.8° | 119.1° |
C3' | C4' | O4' | H4' | 118.8° | 118.7° |
C3' | C4' | C5' | H4' | 118.8° | 122.4° |
C3' | C4' | C5' | O5' | 56.4° | 178.1° |
C3' | C4' | C5' | H5'1 | 178.3° | 58.1° |
C3' | C4' | C5' | H5'2 | 68.8° | 61.9° |
H1 | C3' | C2' | C1' | 159.2° | 118.8° |
H1 | C3' | C2' | H2'1 | 75.5° | 0.1° |
H1 | C3' | C2' | H2'2 | 33.9° | 122.6° |
H1 | C3' | C4' | O4' | 150.9° | 94.9° |
H1 | C3' | C4' | C5' | 32.5° | 24.0° |
H1 | C3' | C4' | H4' | 85.0° | 146.4° |
C1' | C2' | H2'1 | H2'2 | 120.9° | 122.6° |
C2' | C1' | O4' | N1 | 126.5° | 118.9° |
C2' | C1' | O4' | H1' | 117.3° | 118.8° |
C2' | C1' | N1 | H1' | 116.8° | 122.2° |
C2' | C1' | O4' | C4' | 9.0° | 40.4° |
C2' | C1' | N1 | C6 | 67.1° | 115.0° |
C2' | C1' | N1 | C2 | 112.7° | 65.3° |
H2'1 | C2' | C1' | O4' | 152.4° | 94.7° |
H2'1 | C2' | C1' | N1 | 86.6° | 24.2° |
H2'1 | C2' | C1' | H1' | 29.1° | 146.5° |
H2'2 | C2' | C1' | O4' | 98.1° | 142.6° |
H2'2 | C2' | C1' | N1 | 22.9° | 98.4° |
H2'2 | C2' | C1' | H1' | 138.6° | 23.9° |
O4' | C1' | N1 | H1' | 123.2° | 122.3° |
C1' | O4' | C4' | C5' | 110.3° | 159.5° |
C1' | O4' | C4' | H4' | 132.2° | 78.4° |
O4' | C1' | N1 | C6 | 52.9° | 129.6° |
O4' | C1' | N1 | C2 | 127.4° | 50.1° |
N1 | C1' | O4' | C4' | 135.5° | 159.3° |
C1' | N1 | C6 | C2 | 179.8° | 179.7° |
C1' | N1 | C6 | C5 | 179.8° | 180.0° |
C1' | N1 | C6 | H6 | 0.2° | 0.0° |
C1' | N1 | C2 | N3 | 179.9° | 179.7° |
C1' | N1 | C2 | O2 | 0.1° | 0.3° |
H1' | C1' | O4' | C4' | 108.3° | 78.4° |
H1' | C1' | N1 | C6 | 176.1° | 7.2° |
H1' | C1' | N1 | C2 | 4.1° | 172.5° |
O4' | C4' | C5' | H4' | 124.1° | 122.2° |
O4' | C4' | C5' | O5' | 173.5° | 66.5° |
O4' | C4' | C5' | H5'1 | 61.2° | 173.6° |
O4' | C4' | C5' | H5'2 | 48.2° | 53.6° |
C4' | C5' | O5' | H5'1 | 125.3° | 120.0° |
C4' | C5' | O5' | H5'2 | 125.2° | 120.1° |
C4' | C5' | H5'1 | H5'2 | 117.3° | 120.0° |
C4' | C5' | O5' | P | 121.8° | 180.0° |
H4' | C4' | C5' | O5' | 62.4° | 55.7° |
H4' | C4' | C5' | H5'1 | 62.9° | 64.3° |
H4' | C4' | C5' | H5'2 | 172.4° | 175.8° |
O5' | C5' | H5'1 | H5'2 | 117.3° | 120.0° |
C5' | O5' | P | O1P | 14.6° | 55.0° |
C5' | O5' | P | O2P | 134.3° | 65.0° |
C5' | O5' | P | O3P | 105.9° | 175.0° |
H5'1 | C5' | O5' | P | 112.9° | 60.0° |
H5'2 | C5' | O5' | P | 3.4° | 59.9° |
O5' | P | O1P | O2P | 119.3° | 120.0° |
O5' | P | O1P | O3P | 120.9° | 120.0° |
O5' | P | O2P | O3P | 120.6° | 120.0° |
O5' | P | O2P | H2P | 180.0° | 60.0° |
O5' | P | O3P | H3P | 180.0° | 180.0° |
O1P | P | O2P | O3P | 120.2° | 120.0° |
O1P | P | O2P | H2P | 60.8° | 180.0° |
O1P | P | O3P | H3P | 60.0° | 60.0° |
O2P | P | O3P | H3P | 60.2° | 60.0° |
O3P | P | O2P | H2P | 59.4° | 60.0° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | C5A | 179.3° | 180.0° |
N1 | C6 | C5 | C4 | 0.1° | 0.1° |
C6 | N1 | C2 | N3 | 0.1° | 0.6° |
C6 | N1 | C2 | O2 | 179.7° | 180.0° |
C2 | N1 | C6 | C5 | 0.0° | 0.3° |
C2 | N1 | C6 | H6 | 180.0° | 179.7° |
N1 | C2 | N3 | C4 | 0.1° | 0.6° |
N1 | C2 | N3 | O2 | 179.8° | 179.4° |
N1 | C2 | N3 | HN3 | 179.9° | 179.7° |
C6 | C5 | C5A | C4 | 179.4° | 179.9° |
C6 | C5 | C5A | C5B | 79.4° | 174.4° |
C6 | C5 | C5A | H5A | 100.6° | 5.6° |
C6 | C5 | C4 | O4 | 179.8° | 180.0° |
C6 | C5 | C4 | N3 | 0.1° | 0.1° |
H6 | C6 | C5 | C5A | 0.7° | 0.0° |
H6 | C6 | C5 | C4 | 179.9° | 180.0° |
C5 | C5A | C5B | H5A | 180.0° | 179.9° |
C5 | C5A | C5B | BR | 165.9° | 174.9° |
C5 | C5A | C5B | H5B | 14.1° | 5.0° |
C5A | C5 | C4 | O4 | 0.3° | 0.0° |
C5A | C5 | C4 | N3 | 179.4° | 180.0° |
C4 | C5 | C5A | C5B | 101.2° | 5.6° |
C4 | C5 | C5A | H5A | 78.8° | 174.5° |
C5 | C4 | O4 | N3 | 179.7° | 180.0° |
C5 | C4 | N3 | C2 | 0.0° | 0.3° |
C5 | C4 | N3 | HN3 | 180.0° | 180.0° |
C5A | C5B | BR | H5B | 180.0° | 180.0° |
H5A | C5A | C5B | BR | 14.1° | 5.0° |
H5A | C5A | C5B | H5B | 165.9° | 175.0° |
O4 | C4 | N3 | C2 | 179.7° | 179.7° |
O4 | C4 | N3 | HN3 | 0.3° | 0.0° |
C4 | N3 | C2 | HN3 | 180.0° | 179.7° |
C4 | N3 | C2 | O2 | 179.7° | 180.0° |
HN3 | N3 | C2 | O2 | 0.3° | 0.3° |