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BVP

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3'C3'sing1.43Å1.43Å
O3'H3'sing0.97Å0.95Å
C3'C2'sing1.54Å1.52Å
C3'C4'sing1.54Å1.50Å
C3'H1sing1.09Å1.11Å
C2'C1'sing1.54Å1.52Å
C2'H2'1sing1.09Å1.11Å
C2'H2'2sing1.09Å1.11Å
C1'O4'sing1.44Å1.44Å
C1'N1sing1.46Å1.53Å
C1'H1'sing1.09Å1.12Å
O4'C4'sing1.45Å1.45Å
C4'C5'sing1.53Å1.54Å
C4'H4'sing1.09Å1.11Å
C5'O5'sing1.43Å1.44Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.11Å
O5'Psing1.61Å1.64Å
PO1Pdoub1.48Å1.49Å
PO2Psing1.61Å1.50Å
PO3Psing1.61Å1.47Å
O2PH2Psing0.97Å0.95Å
O3PH3Psing0.97Å0.95Å
N1C6sing1.37Å1.40Å
N1C2sing1.34Å1.39Å
C6C5doub1.37Å1.45Å
C6H6sing1.08Å1.10Å
C5C5Asing1.48Å1.14Å
C5C4sing1.47Å1.47Å
C5AC5Bdoub1.33Å1.39Å
C5AH5Asing1.08Å1.10Å
C5BBRsing1.89Å1.98Å
C5BH5Bsing1.08Å1.10Å
C4O4doub1.22Å1.26Å
C4N3sing1.35Å1.38Å
N3C2sing1.34Å1.37Å
N3HN3sing0.97Å1.02Å
C2O2doub1.22Å1.22Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C3'O3'H3'113.5°106.8°
O3'C3'C2'113.5°110.5°
O3'C3'C4'107.7°110.5°
O3'C3'H1106.4°110.5°
C2'C3'C4'104.0°104.2°
C2'C3'H1109.9°110.5°
C3'C2'C1'102.0°104.1°
C3'C2'H2'1115.1°110.5°
C3'C2'H2'2115.1°110.5°
C4'C3'H1115.5°110.5°
C3'C4'O4'105.1°104.7°
C3'C4'C5'115.7°110.7°
C3'C4'H4'107.7°110.3°
C1'C2'H2'1115.1°110.5°
C1'C2'H2'2115.1°110.5°
C2'C1'O4'106.3°104.8°
C2'C1'N1117.1°110.4°
C2'C1'H1'106.1°110.3°
H2'1C2'H2'295.4°110.5°
O4'C1'N1108.2°110.5°
O4'C1'H1'115.4°110.4°
C1'O4'C4'110.3°105.4°
N1C1'H1'104.1°110.4°
C1'N1C6121.4°119.3°
C1'N1C2118.0°119.3°
O4'C4'C5'107.5°110.3°
O4'C4'H4'115.9°110.3°
C5'C4'H4'105.3°110.3°
C4'C5'O5'111.6°109.5°
C4'C5'H5'1111.4°109.5°
C4'C5'H5'2111.4°109.5°
O5'C5'H5'1111.5°109.4°
O5'C5'H5'2111.4°109.5°
C5'O5'P122.6°106.8°
H5'1C5'H5'298.9°109.4°
O5'PO1P108.9°109.5°
O5'PO2P109.1°109.5°
O5'PO3P110.3°109.5°
O1PPO2P109.7°109.5°
O1PPO3P109.7°109.4°
O2PPO3P109.1°109.5°
PO2PH2P109.0°106.8°
PO3PH3P110.4°106.8°
C6N1C2120.6°121.4°
N1C6C5120.7°119.5°
N1C6H6117.9°120.3°
N1C2N3119.4°121.9°
N1C2O2122.2°119.1°
C5C6H6121.5°120.3°
C6C5C5A131.5°120.9°
C6C5C4116.9°118.3°
C5AC5C4111.6°120.8°
C5C5AC5B128.3°120.0°
C5C5AH5A104.7°120.0°
C5C4O4124.6°120.7°
C5C4N3117.9°118.6°
C5BC5AH5A127.0°120.0°
C5AC5BBR123.7°120.0°
C5AC5BH5B99.9°120.0°
BRC5BH5B136.4°120.0°
O4C4N3117.5°120.7°
C4N3C2124.5°120.3°
C4N3HN3118.5°119.8°
C2N3HN3117.1°119.8°
N3C2O2118.3°119.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3'C3'C2'C4'116.7°118.7°
O3'C3'C2'H1119.1°122.6°
O3'C3'C4'H1118.7°122.6°
O3'C3'C2'C1'81.8°118.7°
O3'C3'C2'H2'143.5°122.7°
O3'C3'C2'H2'2153.0°0.0°
O3'C3'C4'O4'90.3°142.5°
O3'C3'C4'C5'151.3°98.6°
O3'C3'C4'H4'33.8°23.8°
H3'O3'C3'C2'180.0°63.3°
H3'O3'C3'C4'65.5°178.1°
H3'O3'C3'H158.9°59.3°
C2'C3'C4'H1120.6°118.7°
C3'C2'C1'H2'1125.3°118.7°
C3'C2'C1'H2'2125.2°118.7°
C3'C2'H2'1H2'2120.9°122.7°
C3'C2'C1'O4'27.1°24.0°
C3'C2'C1'N1148.1°142.9°
C3'C2'C1'H1'96.2°94.8°
C2'C3'C4'O4'30.4°23.8°
C2'C3'C4'C5'88.0°142.7°
C2'C3'C4'H4'154.5°94.9°
C4'C3'C2'C1'34.9°0.1°
C4'C3'C2'H2'1160.2°118.6°
C4'C3'C2'H2'290.3°118.8°
C3'C4'O4'C1'13.5°40.3°
C3'C4'O4'C5'123.8°119.1°
C3'C4'O4'H4'118.8°118.7°
C3'C4'C5'H4'118.8°122.4°
C3'C4'C5'O5'56.4°178.1°
C3'C4'C5'H5'1178.3°58.1°
C3'C4'C5'H5'268.8°61.9°
H1C3'C2'C1'159.2°118.8°
H1C3'C2'H2'175.5°0.1°
H1C3'C2'H2'233.9°122.6°
H1C3'C4'O4'150.9°94.9°
H1C3'C4'C5'32.5°24.0°
H1C3'C4'H4'85.0°146.4°
C1'C2'H2'1H2'2120.9°122.6°
C2'C1'O4'N1126.5°118.9°
C2'C1'O4'H1'117.3°118.8°
C2'C1'N1H1'116.8°122.2°
C2'C1'O4'C4'9.0°40.4°
C2'C1'N1C667.1°115.0°
C2'C1'N1C2112.7°65.3°
H2'1C2'C1'O4'152.4°94.7°
H2'1C2'C1'N186.6°24.2°
H2'1C2'C1'H1'29.1°146.5°
H2'2C2'C1'O4'98.1°142.6°
H2'2C2'C1'N122.9°98.4°
H2'2C2'C1'H1'138.6°23.9°
O4'C1'N1H1'123.2°122.3°
C1'O4'C4'C5'110.3°159.5°
C1'O4'C4'H4'132.2°78.4°
O4'C1'N1C652.9°129.6°
O4'C1'N1C2127.4°50.1°
N1C1'O4'C4'135.5°159.3°
C1'N1C6C2179.8°179.7°
C1'N1C6C5179.8°180.0°
C1'N1C6H60.2°0.0°
C1'N1C2N3179.9°179.7°
C1'N1C2O20.1°0.3°
H1'C1'O4'C4'108.3°78.4°
H1'C1'N1C6176.1°7.2°
H1'C1'N1C24.1°172.5°
O4'C4'C5'H4'124.1°122.2°
O4'C4'C5'O5'173.5°66.5°
O4'C4'C5'H5'161.2°173.6°
O4'C4'C5'H5'248.2°53.6°
C4'C5'O5'H5'1125.3°120.0°
C4'C5'O5'H5'2125.2°120.1°
C4'C5'H5'1H5'2117.3°120.0°
C4'C5'O5'P121.8°180.0°
H4'C4'C5'O5'62.4°55.7°
H4'C4'C5'H5'162.9°64.3°
H4'C4'C5'H5'2172.4°175.8°
O5'C5'H5'1H5'2117.3°120.0°
C5'O5'PO1P14.6°55.0°
C5'O5'PO2P134.3°65.0°
C5'O5'PO3P105.9°175.0°
H5'1C5'O5'P112.9°60.0°
H5'2C5'O5'P3.4°59.9°
O5'PO1PO2P119.3°120.0°
O5'PO1PO3P120.9°120.0°
O5'PO2PO3P120.6°120.0°
O5'PO2PH2P180.0°60.0°
O5'PO3PH3P180.0°180.0°
O1PPO2PO3P120.2°120.0°
O1PPO2PH2P60.8°180.0°
O1PPO3PH3P60.0°60.0°
O2PPO3PH3P60.2°60.0°
O3PPO2PH2P59.4°60.0°
N1C6C5H6180.0°180.0°
N1C6C5C5A179.3°180.0°
N1C6C5C40.1°0.1°
C6N1C2N30.1°0.6°
C6N1C2O2179.7°180.0°
C2N1C6C50.0°0.3°
C2N1C6H6180.0°179.7°
N1C2N3C40.1°0.6°
N1C2N3O2179.8°179.4°
N1C2N3HN3179.9°179.7°
C6C5C5AC4179.4°179.9°
C6C5C5AC5B79.4°174.4°
C6C5C5AH5A100.6°5.6°
C6C5C4O4179.8°180.0°
C6C5C4N30.1°0.1°
H6C6C5C5A0.7°0.0°
H6C6C5C4179.9°180.0°
C5C5AC5BH5A180.0°179.9°
C5C5AC5BBR165.9°174.9°
C5C5AC5BH5B14.1°5.0°
C5AC5C4O40.3°0.0°
C5AC5C4N3179.4°180.0°
C4C5C5AC5B101.2°5.6°
C4C5C5AH5A78.8°174.5°
C5C4O4N3179.7°180.0°
C5C4N3C20.0°0.3°
C5C4N3HN3180.0°180.0°
C5AC5BBRH5B180.0°180.0°
H5AC5AC5BBR14.1°5.0°
H5AC5AC5BH5B165.9°175.0°
O4C4N3C2179.7°179.7°
O4C4N3HN30.3°0.0°
C4N3C2HN3180.0°179.7°
C4N3C2O2179.7°180.0°
HN3N3C2O20.3°0.3°

222415

PDB entries from 2024-07-10

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