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Summary Geometry Related PDB entries

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Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	CA	sing	1.51Å	1.54Å
C	O	doub	1.21Å	1.23Å
CA	C1	sing	1.51Å	1.40Å
C1	C2	doub	1.38Å	1.39Å	Aromatic
C1	C6	sing	1.38Å	1.40Å	Aromatic
C2	C3	sing	1.38Å	1.39Å	Aromatic
C6	C5	doub	1.38Å	1.39Å	Aromatic
C3	C4	doub	1.38Å	1.39Å	Aromatic
C5	C4	sing	1.38Å	1.40Å	Aromatic
C4	C7	sing	1.51Å	1.40Å
C7	N1	sing	1.47Å	1.47Å
N1	H1	sing	1.01Å	1.00Å
N1	H2	sing	1.01Å	1.00Å
C2	H4	sing	1.08Å	1.08Å
C3	H5	sing	1.08Å	1.08Å
C5	H6	sing	1.08Å	1.08Å
C6	H7	sing	1.08Å	1.08Å
CA	H8	sing	1.09Å	1.10Å
CA	H9	sing	1.09Å	1.10Å
C7	H11	sing	1.09Å	1.10Å
C7	H12	sing	1.09Å	1.10Å
C	O1	sing	1.34Å	1.35Å
O1	H3	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	C	O	119.4°	119.9°
C	CA	C1	105.7°	109.5°
C	CA	H8	110.4°	109.4°
C	CA	H9	110.4°	109.5°
CA	C	O1	116.9°	120.0°
O	C	O1	123.7°	120.0°
CA	C1	C2	118.9°	120.0°
CA	C1	C6	121.9°	120.0°
C1	CA	H8	110.4°	109.5°
C1	CA	H9	110.4°	109.5°
C2	C1	C6	119.2°	120.0°
C1	C2	C3	120.5°	120.0°
C1	C2	H4	119.7°	120.0°
C1	C6	C5	120.4°	120.0°
C1	C6	H7	119.8°	120.0°
C2	C3	C4	120.4°	120.0°
C3	C2	H4	119.8°	120.0°
C2	C3	H5	119.8°	120.0°
C6	C5	C4	119.9°	120.0°
C6	C5	H6	120.0°	120.0°
C5	C6	H7	119.8°	120.0°
C3	C4	C5	119.5°	120.0°
C3	C4	C7	119.1°	120.0°
C4	C3	H5	119.8°	120.0°
C5	C4	C7	121.4°	120.0°
C4	C5	H6	120.0°	120.0°
C4	C7	N1	112.2°	109.4°
C4	C7	H11	108.8°	109.4°
C4	C7	H12	108.8°	109.5°
C7	N1	H1	109.5°	111.1°
C7	N1	H2	109.5°	111.0°
N1	C7	H11	108.8°	109.5°
N1	C7	H12	108.8°	109.4°
H1	N1	H2	109.5°	111.0°
H8	CA	H9	109.5°	109.5°
H11	C7	H12	109.5°	109.5°
C	O1	H3	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	C	O	O1	176.9°	180.0°
C	CA	C1	H8	119.4°	119.9°
C	CA	C1	H9	119.4°	120.1°
C	CA	C1	C2	72.1°	89.9°
C	CA	C1	C6	106.3°	89.5°
C	CA	H8	H9	121.7°	120.0°
CA	C	O1	H3	177.0°	179.9°
O	C	CA	C1	52.9°	0.1°
O	C	CA	H8	66.5°	120.0°
O	C	CA	H9	172.3°	120.0°
O	C	O1	H3	0.0°	0.0°
CA	C1	C2	C6	178.4°	179.4°
CA	C1	C2	C3	178.7°	180.0°
CA	C1	C6	C5	179.2°	180.0°
CA	C1	C2	H4	1.2°	0.3°
CA	C1	C6	H7	0.8°	0.3°
C1	CA	H8	H9	121.7°	120.1°
C1	CA	C	O1	124.2°	180.0°
C1	C2	C3	H4	180.0°	179.7°
C2	C1	C6	C5	0.8°	0.5°
C1	C2	C3	C4	0.3°	0.2°
C1	C2	C3	H5	179.7°	179.8°
C2	C1	C6	H7	179.2°	179.7°
C2	C1	CA	H8	168.5°	30.0°
C2	C1	CA	H9	47.3°	150.0°
C6	C1	C2	C3	0.3°	0.5°
C1	C6	C5	H7	180.0°	179.7°
C1	C6	C5	C4	0.7°	0.2°
C6	C1	C2	H4	179.6°	179.7°
C1	C6	C5	H6	179.3°	179.7°
C6	C1	CA	H8	13.1°	150.6°
C6	C1	CA	H9	134.4°	30.6°
C2	C3	C4	H5	180.0°	180.0°
C2	C3	C4	C5	0.4°	0.1°
C2	C3	C4	C7	179.5°	180.0°
C6	C5	C4	C3	0.1°	0.1°
C6	C5	C4	H6	180.0°	180.0°
C6	C5	C4	C7	180.0°	180.0°
C3	C4	C5	C7	179.9°	179.9°
C3	C4	C7	N1	130.8°	90.0°
C4	C3	C2	H4	179.7°	180.0°
C3	C4	C5	H6	180.0°	180.0°
C3	C4	C7	H11	108.8°	30.0°
C3	C4	C7	H12	10.4°	150.0°
C5	C4	C7	N1	49.3°	90.0°
C5	C4	C3	H5	179.6°	179.9°
C4	C5	C6	H7	179.3°	180.0°
C5	C4	C7	H11	71.1°	150.0°
C5	C4	C7	H12	169.7°	29.9°
C4	C7	N1	H11	120.4°	120.0°
C4	C7	N1	H12	120.4°	120.0°
C4	C7	N1	H1	180.0°	56.1°
C4	C7	N1	H2	60.0°	180.0°
C7	C4	C3	H5	0.5°	0.0°
C7	C4	C5	H6	0.1°	0.0°
C4	C7	H11	H12	118.8°	120.0°
C7	N1	H1	H2	120.0°	123.9°
N1	C7	H11	H12	118.8°	120.0°
H1	N1	C7	H11	59.6°	176.0°
H1	N1	C7	H12	59.6°	63.9°
H2	N1	C7	H11	179.6°	60.0°
H2	N1	C7	H12	60.4°	60.0°
H4	C2	C3	H5	0.3°	0.0°
H6	C5	C6	H7	0.6°	0.0°
H8	CA	C	O1	116.4°	60.0°
H9	CA	C	O1	4.8°	59.9°

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