BVD

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O5'	C5'	sing	1.43Å	1.43Å
O5'	HO5'	sing	0.97Å	0.95Å
C5'	C4'	sing	1.53Å	1.55Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.12Å
C4'	O4'	sing	1.44Å	1.45Å
C4'	C3'	sing	1.55Å	1.53Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.47Å
C1'	N1	sing	1.46Å	1.53Å
C1'	C2'	sing	1.54Å	1.52Å
C1'	H1'	sing	1.09Å	1.11Å
N1	C6	sing	1.36Å	1.37Å
N1	C2	sing	1.34Å	1.36Å
C6	C5	doub	1.37Å	1.32Å
C6	H6	sing	1.08Å	1.10Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.34Å	1.31Å
N3	C4	sing	1.35Å	1.36Å
N3	HN3	sing	0.97Å	1.02Å
C4	O4	doub	1.22Å	1.22Å
C4	C5	sing	1.47Å	1.42Å
C5	C5A	sing	1.48Å	1.38Å
C5A	C5B	doub	1.33Å	1.36Å
C5A	H5A	sing	1.08Å	1.10Å
C5B	BR	sing	1.89Å	1.93Å
C5B	H5B	sing	1.08Å	1.10Å
C2'	C3'	sing	1.55Å	1.56Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C3'	O3'	sing	1.43Å	1.40Å
C3'	H3'	sing	1.09Å	1.12Å
O3'	HO3'	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C5'	O5'	HO5'	112.4°	106.8°
O5'	C5'	C4'	112.3°	109.5°
O5'	C5'	H5'1	111.1°	109.5°
O5'	C5'	H5'2	111.2°	109.5°
C4'	C5'	H5'1	111.2°	109.5°
C4'	C5'	H5'2	111.2°	109.5°
C5'	C4'	O4'	112.6°	110.6°
C5'	C4'	C3'	114.3°	110.6°
C5'	C4'	H4'	101.6°	110.5°
H5'1	C5'	H5'2	99.2°	109.5°
O4'	C4'	C3'	100.8°	103.6°
O4'	C4'	H4'	114.9°	110.6°
C4'	O4'	C1'	116.2°	107.0°
C3'	C4'	H4'	113.3°	110.7°
C4'	C3'	C2'	101.7°	102.1°
C4'	C3'	O3'	103.5°	111.2°
C4'	C3'	H3'	117.3°	110.8°
O4'	C1'	N1	113.9°	109.9°
O4'	C1'	C2'	100.3°	107.3°
O4'	C1'	H1'	117.3°	109.9°
N1	C1'	C2'	120.2°	110.0°
N1	C1'	H1'	95.8°	109.9°
C1'	N1	C6	120.6°	119.3°
C1'	N1	C2	119.5°	119.3°
C2'	C1'	H1'	110.5°	109.8°
C1'	C2'	C3'	104.1°	104.2°
C1'	C2'	H2'1	114.2°	110.5°
C1'	C2'	H2'2	114.2°	110.5°
C6	N1	C2	119.9°	121.4°
N1	C6	C5	124.5°	119.5°
N1	C6	H6	119.8°	120.3°
N1	C2	O2	125.1°	119.1°
N1	C2	N3	115.6°	121.9°
C5	C6	H6	115.7°	120.2°
C6	C5	C4	115.6°	118.2°
C6	C5	C5A	118.7°	120.9°
O2	C2	N3	119.3°	119.0°
C2	N3	C4	126.5°	120.3°
C2	N3	HN3	114.7°	119.8°
C4	N3	HN3	118.9°	119.9°
N3	C4	O4	118.3°	120.6°
N3	C4	C5	116.6°	118.7°
O4	C4	C5	125.1°	120.6°
C4	C5	C5A	125.0°	120.9°
C5	C5A	C5B	121.8°	120.1°
C5	C5A	H5A	120.1°	120.0°
C5B	C5A	H5A	118.0°	119.9°
C5A	C5B	BR	122.1°	120.1°
C5A	C5B	H5B	101.4°	119.9°
BR	C5B	H5B	136.5°	120.0°
C3'	C2'	H2'1	114.3°	110.3°
C3'	C2'	H2'2	114.3°	110.6°
C2'	C3'	O3'	108.0°	110.9°
C2'	C3'	H3'	113.4°	110.8°
H2'1	C2'	H2'2	96.2°	110.6°
O3'	C3'	H3'	111.9°	110.8°
C3'	O3'	HO3'	103.5°	106.8°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O5'	C5'	C4'	H5'1	125.2°	120.0°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	H5'1	H5'2	117.0°	120.0°
O5'	C5'	C4'	O4'	58.3°	63.6°
O5'	C5'	C4'	C3'	56.0°	177.8°
O5'	C5'	C4'	H4'	178.3°	59.3°
HO5'	O5'	C5'	C4'	180.0°	180.0°
HO5'	O5'	C5'	H5'1	54.7°	60.0°
HO5'	O5'	C5'	H5'2	54.7°	60.0°
C4'	C5'	H5'1	H5'2	117.1°	120.0°
C5'	C4'	O4'	C3'	122.2°	118.5°
C5'	C4'	O4'	H4'	115.7°	122.8°
C5'	C4'	C3'	H4'	115.7°	122.9°
C5'	C4'	O4'	C1'	105.8°	158.6°
C5'	C4'	C3'	C2'	87.1°	155.3°
C5'	C4'	C3'	O3'	161.0°	86.4°
C5'	C4'	C3'	H3'	37.2°	37.3°
H5'1	C5'	C4'	O4'	176.5°	56.4°
H5'1	C5'	C4'	C3'	69.2°	57.8°
H5'1	C5'	C4'	H4'	53.1°	179.3°
H5'2	C5'	C4'	O4'	67.0°	176.4°
H5'2	C5'	C4'	C3'	178.8°	62.2°
H5'2	C5'	C4'	H4'	56.4°	60.7°
O4'	C4'	C3'	H4'	123.2°	118.6°
C4'	O4'	C1'	N1	139.0°	146.1°
C4'	O4'	C1'	C2'	9.3°	26.5°
C4'	O4'	C1'	H1'	110.4°	92.8°
O4'	C4'	C3'	C2'	34.0°	36.8°
O4'	C4'	C3'	O3'	78.0°	155.1°
O4'	C4'	C3'	H3'	158.2°	81.2°
C3'	C4'	O4'	C1'	16.4°	40.0°
C4'	C3'	C2'	C1'	41.7°	20.7°
C4'	C3'	C2'	O3'	108.5°	118.5°
C4'	C3'	C2'	H3'	126.8°	118.0°
C4'	C3'	C2'	H2'1	166.9°	97.9°
C4'	C3'	C2'	H2'2	83.6°	139.4°
C4'	C3'	O3'	H3'	127.2°	123.7°
C4'	C3'	O3'	HO3'	180.0°	174.2°
H4'	C4'	O4'	C1'	138.6°	78.6°
H4'	C4'	C3'	C2'	157.2°	81.8°
H4'	C4'	C3'	O3'	45.3°	36.5°
H4'	C4'	C3'	H3'	78.5°	160.2°
O4'	C1'	N1	C2'	118.8°	117.9°
O4'	C1'	N1	H1'	123.3°	121.1°
O4'	C1'	C2'	H1'	124.5°	119.4°
O4'	C1'	N1	C6	61.8°	121.5°
O4'	C1'	N1	C2	115.3°	58.3°
O4'	C1'	C2'	C3'	30.7°	2.2°
O4'	C1'	C2'	H2'1	156.0°	120.7°
O4'	C1'	C2'	H2'2	94.6°	116.6°
N1	C1'	C2'	H1'	110.1°	121.1°
C1'	N1	C6	C2	177.1°	179.7°
C1'	N1	C6	C5	172.4°	180.0°
C1'	N1	C6	H6	7.6°	0.1°
C1'	N1	C2	O2	9.3°	0.2°
C1'	N1	C2	N3	172.5°	179.8°
N1	C1'	C2'	C3'	156.2°	121.7°
N1	C1'	C2'	H2'1	78.5°	119.8°
N1	C1'	C2'	H2'2	30.9°	2.9°
C2'	C1'	N1	C6	57.0°	120.6°
C2'	C1'	N1	C2	125.9°	59.6°
C1'	C2'	C3'	H2'1	125.3°	118.6°
C1'	C2'	C3'	H2'2	125.2°	118.8°
C1'	C2'	H2'1	H2'2	120.0°	122.7°
C1'	C2'	C3'	O3'	66.9°	139.2°
C1'	C2'	C3'	H3'	168.5°	97.3°
H1'	C1'	N1	C6	174.9°	0.4°
H1'	C1'	N1	C2	8.1°	179.3°
H1'	C1'	C2'	C3'	93.8°	117.2°
H1'	C1'	C2'	H2'1	31.5°	1.3°
H1'	C1'	C2'	H2'2	140.9°	123.9°
N1	C6	C5	H6	180.0°	180.0°
C6	N1	C2	O2	173.6°	180.0°
C6	N1	C2	N3	4.6°	0.5°
N1	C6	C5	C4	8.2°	0.0°
N1	C6	C5	C5A	178.9°	180.0°
C2	N1	C6	C5	4.6°	0.2°
C2	N1	C6	H6	175.4°	179.8°
N1	C2	O2	N3	178.2°	179.6°
N1	C2	N3	C4	9.8°	0.4°
N1	C2	N3	HN3	170.2°	179.7°
C6	C5	C4	N3	11.8°	0.0°
C6	C5	C4	O4	165.7°	180.0°
C6	C5	C4	C5A	170.1°	180.0°
C6	C5	C5A	C5B	162.7°	174.4°
C6	C5	C5A	H5A	17.3°	5.6°
H6	C6	C5	C4	171.8°	180.0°
H6	C6	C5	C5A	1.1°	0.1°
O2	C2	N3	C4	168.6°	180.0°
O2	C2	N3	HN3	11.4°	0.2°
C2	N3	C4	HN3	180.0°	179.8°
C2	N3	C4	O4	164.0°	179.7°
C2	N3	C4	C5	13.6°	0.2°
N3	C4	O4	C5	177.4°	179.9°
N3	C4	C5	C5A	178.1°	179.9°
HN3	N3	C4	O4	16.0°	0.1°
HN3	N3	C4	C5	166.4°	180.0°
O4	C4	C5	C5A	4.4°	0.0°
C4	C5	C5A	C5B	27.4°	5.6°
C4	C5	C5A	H5A	152.5°	174.4°
C5	C5A	C5B	H5A	180.0°	179.9°
C5	C5A	C5B	BR	174.8°	174.9°
C5	C5A	C5B	H5B	5.2°	5.0°
C5A	C5B	BR	H5B	180.0°	180.0°
H5A	C5A	C5B	BR	5.2°	5.1°
H5A	C5A	C5B	H5B	174.8°	174.9°
C3'	C2'	H2'1	H2'2	120.2°	122.6°
C2'	C3'	O3'	H3'	125.5°	123.5°
C2'	C3'	O3'	HO3'	72.7°	61.4°
H2'1	C2'	C3'	O3'	58.4°	20.6°
H2'1	C2'	C3'	H3'	66.2°	144.1°
H2'2	C2'	C3'	O3'	167.9°	102.0°
H2'2	C2'	C3'	H3'	43.3°	21.4°
H3'	C3'	O3'	HO3'	52.8°	62.2°

Definition date:	1999-07-08
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB
Derived from:	1KI8