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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Pdoub1.48Å1.51Å
PO2Psing1.61Å1.55Å
PO5'sing1.61Å1.64Å
POBBsing1.61Å1.48Å
O2PH2Psing0.97Å0.95Å
O5'C5'sing1.43Å1.39Å
C5'C4'sing1.53Å1.44Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.44Å1.40Å
C4'C3'sing1.54Å1.43Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.47Å
C3'O3'sing1.43Å1.41Å
C3'C2'sing1.55Å1.49Å
C3'H3'sing1.09Å1.10Å
O3'H3sing0.97Å0.95Å
C2'O2'sing1.43Å1.40Å
C2'C1'sing1.54Å1.53Å
C2'H1sing1.09Å1.10Å
O2'H2'sing0.97Å0.95Å
C1'N9sing1.47Å1.48Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.38ÅAromatic
N9C4sing1.37Å1.40ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.36Å1.37ÅAromatic
C5C6sing1.41Å1.40ÅAromatic
C5C4doub1.40Å1.39ÅAromatic
C6N6sing1.38Å1.35Å
C6N1doub1.33Å1.43ÅAromatic
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
N1C2sing1.32Å1.40ÅAromatic
C2N3doub1.32Å1.41ÅAromatic
C2H4sing1.08Å1.08Å
N3C4sing1.33Å1.41ÅAromatic
CBBOBBsing1.43Å1.31Å
CBBCABsing1.53Å1.51Å
CBBH111sing1.09Å1.10Å
CBBH112sing1.09Å1.10Å
CABC9Bsing1.53Å1.53Å
CABH101sing1.09Å1.10Å
CABH102sing1.09Å1.10Å
C9BC8Bsing1.53Å1.52Å
C9BH9B1sing1.09Å1.10Å
C9BH9B2sing1.09Å1.10Å
C8BC7Bsing1.53Å1.52Å
C8BH8B1sing1.09Å1.10Å
C8BH8B2sing1.09Å1.10Å
C7BC2Bsing1.53Å1.54Å
C7BH7B1sing1.09Å1.10Å
C7BH7B2sing1.09Å1.10Å
C2BS1Bsing1.85Å1.80Å
C2BC4Bsing1.54Å1.55Å
C2BH2Bsing1.09Å1.10Å
S1BC6Bsing1.85Å1.78Å
C6BC5Bsing1.54Å1.54Å
C6BH6B1sing1.09Å1.10Å
C6BH6B2sing1.09Å1.10Å
C5BN1Bsing1.47Å1.48Å
C5BC4Bsing1.53Å1.55Å
C5BH5Bsing1.09Å1.10Å
N1BC3Bsing1.34Å1.36Å
N1BH1Bsing0.97Å1.00Å
C3BO3Bdoub1.22Å1.27Å
C3BN2Bsing1.34Å1.38Å
N2BC4Bsing1.47Å1.45Å
N2BH2sing0.97Å1.00Å
C4BH4Bsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P112.1°109.5°
O1PPO5'111.1°109.5°
O1PPOBB112.8°109.5°
O2PPO5'110.8°109.5°
O2PPOBB109.3°109.5°
PO2PH2P109.5°106.8°
O5'POBB100.1°109.5°
PO5'C5'124.5°106.8°
POBBCBB136.4°106.8°
O5'C5'C4'114.7°109.5°
O5'C5'H5'1106.6°109.5°
O5'C5'H5'2107.8°109.5°
C4'C5'H5'1106.6°109.4°
C4'C5'H5'2107.8°109.4°
C5'C4'O4'118.0°110.4°
C5'C4'C3'114.7°110.5°
C5'C4'H4'97.0°110.3°
H5'1C5'H5'2113.7°109.5°
O4'C4'C3'101.3°104.8°
O4'C4'H4'111.4°110.4°
C4'O4'C1'107.4°105.3°
C3'C4'H4'115.1°110.3°
C4'C3'O3'120.2°110.5°
C4'C3'C2'101.3°104.1°
C4'C3'H3'110.4°110.5°
O4'C1'C2'102.1°104.9°
O4'C1'N9106.1°110.4°
O4'C1'H1'119.9°110.3°
O3'C3'C2'115.4°110.6°
O3'C3'H3'94.6°110.5°
C3'O3'H3109.5°106.8°
C2'C3'H3'115.8°110.6°
C3'C2'O2'108.5°110.5°
C3'C2'C1'102.9°104.0°
C3'C2'H1116.5°110.5°
O2'C2'C1'115.4°110.8°
O2'C2'H1104.3°110.4°
C2'O2'H2'109.5°106.8°
C1'C2'H1109.7°110.4°
C2'C1'N9118.8°110.4°
C2'C1'H1'107.5°110.3°
N9C1'H1'103.5°110.3°
C1'N9C8129.2°126.3°
C1'N9C4123.0°126.3°
C8N9C4107.9°107.5°
N9C8N7109.0°110.0°
N9C8H8125.5°125.0°
N9C4C5106.1°106.0°
N9C4N3131.2°134.9°
N7C8H8125.5°125.0°
C8N7C5108.2°109.4°
N7C5C6130.6°134.7°
N7C5C4108.8°107.2°
C6C5C4120.5°118.1°
C5C6N6121.1°120.8°
C5C6N1116.8°118.5°
C5C4N3122.8°119.1°
N6C6N1122.0°120.8°
C6N6HN61126.0°120.0°
C6N6HN62107.9°120.0°
C6N1C2122.8°121.2°
HN61N6HN62126.0°120.0°
N1C2N3118.9°122.5°
N1C2H4120.5°118.7°
N3C2H4120.6°118.8°
C2N3C4118.2°120.6°
OBBCBBCAB115.4°109.5°
OBBCBBH111106.2°109.5°
OBBCBBH112107.5°109.5°
CABCBBH111106.2°109.4°
CABCBBH112107.5°109.4°
CBBCABC9B121.9°109.5°
CBBCABH101102.6°109.5°
CBBCABH102105.5°109.5°
H111CBBH112114.2°109.5°
C9BCABH101102.6°109.5°
C9BCABH102105.5°109.5°
CABC9BC8B110.7°109.5°
CABC9BH9B1108.8°109.4°
CABC9BH9B2109.1°109.4°
H101CABH102119.8°109.4°
C8BC9BH9B1108.8°109.5°
C8BC9BH9B2109.0°109.5°
C9BC8BC7B113.6°109.5°
C9BC8BH8B1107.1°109.5°
C9BC8BH8B2108.1°109.5°
H9B1C9BH9B2110.4°109.5°
C7BC8BH8B1107.2°109.4°
C7BC8BH8B2108.1°109.5°
C8BC7BC2B115.6°109.5°
C8BC7BH7B1106.1°109.4°
C8BC7BH7B2107.5°109.4°
H8B1C8BH8B2112.8°109.4°
C2BC7BH7B1106.0°109.5°
C2BC7BH7B2107.4°109.5°
C7BC2BS1B113.4°111.0°
C7BC2BC4B117.5°111.1°
C7BC2BH2B99.3°111.0°
H7B1C7BH7B2114.4°109.5°
S1BC2BC4B104.9°101.4°
S1BC2BH2B113.2°111.0°
C2BS1BC6B89.8°97.4°
C4BC2BH2B108.7°111.0°
C2BC4BC5B105.2°113.7°
C2BC4BN2B114.1°109.0°
C2BC4BH4B107.8°109.8°
S1BC6BC5B101.8°101.4°
S1BC6BH6B1113.7°111.0°
S1BC6BH6B2112.1°111.1°
C5BC6BH6B1113.7°111.0°
C5BC6BH6B2112.1°111.1°
C6BC5BN1B113.1°109.1°
C6BC5BC4B111.7°113.7°
C6BC5BH5B103.7°110.0°
H6B1C6BH6B2103.7°110.9°
N1BC5BC4B103.5°104.1°
N1BC5BH5B111.9°110.0°
C5BN1BC3B110.3°109.0°
C5BN1BH1B124.8°125.5°
C4BC5BH5B113.3°109.7°
C5BC4BN2B104.6°104.0°
C5BC4BH4B116.9°110.2°
C3BN1BH1B124.9°125.5°
N1BC3BO3B125.3°123.0°
N1BC3BN2B111.2°113.9°
O3BC3BN2B123.5°123.1°
C3BN2BC4B110.4°109.0°
C3BN2BH2124.8°125.5°
C4BN2BH2124.8°125.5°
N2BC4BH4B108.4°110.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO5'124.8°120.0°
O1PPO2POBB125.8°120.0°
O1PPO5'OBB119.4°120.0°
O1PPO2PH2P42.7°180.0°
O1PPO5'C5'60.8°55.0°
O1PPOBBCBB56.0°55.0°
O2PPO5'OBB115.2°120.0°
O2PPO5'C5'64.5°65.0°
O2PPOBBCBB69.5°65.1°
O5'PO2PH2P82.1°60.0°
PO5'C5'C4'160.7°180.0°
PO5'C5'H5'143.1°60.0°
PO5'C5'H5'279.2°60.0°
O5'POBBCBB174.1°175.0°
OBBPO2PH2P168.5°60.0°
OBBPO5'C5'179.8°175.0°
POBBCBBCAB173.4°180.0°
POBBCBBH11156.0°60.1°
POBBCBBH11266.6°60.0°
O5'C5'C4'H5'1117.6°120.0°
O5'C5'C4'H5'2120.0°120.0°
O5'C5'H5'1H5'2118.5°120.0°
O5'C5'C4'O4'7.2°66.4°
O5'C5'C4'C3'112.2°178.1°
O5'C5'C4'H4'126.1°55.8°
C4'C5'H5'1H5'2118.6°120.0°
C5'C4'O4'C3'126.1°119.0°
C5'C4'O4'H4'111.0°122.2°
C5'C4'C3'H4'111.3°122.3°
C5'C4'O4'C1'169.5°159.4°
C5'C4'C3'O3'53.2°98.3°
C5'C4'C3'C2'178.3°143.0°
C5'C4'C3'H3'55.1°24.3°
H5'1C5'C4'O4'110.5°173.6°
H5'1C5'C4'C3'130.2°58.1°
H5'1C5'C4'H4'8.4°64.2°
H5'2C5'C4'O4'127.2°53.5°
H5'2C5'C4'C3'7.8°61.9°
H5'2C5'C4'H4'113.9°175.8°
O4'C4'C3'H4'120.4°118.8°
O4'C4'C3'O3'178.5°142.7°
O4'C4'C3'C2'50.0°24.0°
O4'C4'C3'H3'73.2°94.7°
C4'O4'C1'C2'18.6°40.4°
C4'O4'C1'N9143.7°159.3°
C4'O4'C1'H1'99.9°78.4°
C3'C4'O4'C1'43.4°40.5°
C4'C3'O3'C2'121.9°114.7°
C4'C3'O3'H3'116.8°122.6°
C4'C3'C2'H3'119.4°118.6°
C4'C3'O3'H3166.3°180.0°
C4'C3'C2'O2'84.9°118.8°
C4'C3'C2'C1'37.8°0.1°
C4'C3'C2'H1157.9°118.6°
H4'C4'O4'C1'79.5°78.3°
H4'C4'C3'O3'58.1°23.9°
H4'C4'C3'C2'70.4°94.8°
H4'C4'C3'H3'166.4°146.5°
O4'C1'C2'C3'12.2°23.8°
O4'C1'C2'O2'105.8°142.6°
O4'C1'C2'N9116.2°118.9°
O4'C1'C2'H1'126.9°118.8°
O4'C1'C2'H1136.8°94.7°
O4'C1'N9H1'127.0°122.2°
O4'C1'N9C886.3°22.1°
O4'C1'N9C492.0°158.0°
O3'C3'C2'H3'109.1°122.7°
O3'C3'C2'O2'46.6°0.1°
O3'C3'C2'C1'169.4°118.8°
O3'C3'C2'H170.5°122.7°
C2'C3'O3'H371.9°65.3°
C3'C2'O2'C1'114.8°114.8°
C3'C2'O2'H1124.8°122.6°
C3'C2'C1'H1124.6°118.6°
C3'C2'O2'H2'0.1°61.4°
C3'C2'C1'N9104.0°142.8°
C3'C2'C1'H1'139.1°95.0°
H3'C3'O3'H349.5°57.4°
H3'C3'C2'O2'155.7°122.6°
H3'C3'C2'C1'81.6°118.5°
H3'C3'C2'H138.5°0.0°
O2'C2'C1'H1117.4°122.7°
O2'C2'C1'N9138.0°98.5°
O2'C2'C1'H1'21.1°23.8°
C1'C2'O2'H2'114.9°176.2°
C2'C1'N9H1'118.9°122.2°
C2'C1'N9C827.7°93.4°
C2'C1'N9C4154.0°86.5°
H1C2'O2'H2'124.7°61.2°
H1C2'C1'N920.6°24.2°
H1C2'C1'H1'96.2°146.4°
C1'N9C8C4178.5°180.0°
C1'N9C8N7178.4°180.0°
C1'N9C8H81.7°0.0°
C1'N9C4C5178.9°179.7°
C1'N9C4N32.2°0.1°
H1'C1'N9C8146.7°144.3°
H1'C1'N9C435.1°35.7°
N9C8N7H8180.0°180.0°
N9C8N7C50.5°0.3°
C8N9C4C50.3°0.2°
C8N9C4N3179.2°179.9°
C4N9C8N70.1°0.0°
C4N9C8H8179.9°180.0°
N9C4C5N70.7°0.4°
N9C4C5C6178.7°179.6°
N9C4C5N3179.0°179.9°
N9C4N3C2179.6°180.0°
C8N7C5C6178.5°179.5°
C8N7C5C40.7°0.4°
H8C8N7C5179.5°179.7°
N7C5C6C4177.6°179.0°
N7C5C6N61.2°0.7°
N7C5C6N1179.4°179.5°
N7C5C4N3179.7°179.8°
C5C6N6N1179.4°179.8°
C5C6N6HN61179.7°179.8°
C5C6N6HN620.3°0.6°
C5C6N1C21.0°0.2°
C6C5C4N32.3°0.5°
C4C5C6N6178.7°179.7°
C4C5C6N11.8°0.5°
C5C4N3C21.7°0.2°
C6N6HN61HN62180.0°179.7°
N6C6N1C2179.6°180.0°
N1C6N6HN610.3°0.0°
N1C6N6HN62179.7°179.7°
C6N1C2N30.5°0.1°
C6N1C2H4179.5°180.0°
N1C2N3H4180.0°179.9°
N1C2N3C40.8°0.1°
H4C2N3C4179.2°180.0°
OBBCBBCABH111117.3°120.0°
OBBCBBCABH112120.0°120.0°
OBBCBBH111H112118.3°120.1°
OBBCBBCABC9B52.0°180.0°
OBBCBBCABH101165.8°60.0°
OBBCBBCABH10268.0°60.0°
CABCBBH111H112118.4°120.0°
CBBCABC9BH101113.8°120.0°
CBBCABC9BH102120.0°120.0°
CBBCABH101H102116.4°120.0°
CBBCABC9BC8B133.8°180.0°
CBBCABC9BH9B1106.7°60.0°
CBBCABC9BH9B213.8°59.9°
H111CBBCABC9B65.3°60.0°
H111CBBCABH10148.5°180.0°
H111CBBCABH102174.7°60.0°
H112CBBCABC9B172.0°60.0°
H112CBBCABH10174.2°60.0°
H112CBBCABH10252.0°180.0°
C9BCABH101H102116.4°120.0°
CABC9BC8BH9B1119.5°119.9°
CABC9BC8BH9B2120.0°120.0°
CABC9BH9B1H9B2119.7°119.9°
CABC9BC8BC7B139.9°180.0°
CABC9BC8BH8B1101.9°60.0°
CABC9BC8BH8B220.0°59.9°
H101CABC9BC8B20.1°60.0°
H101CABC9BH9B1139.6°180.0°
H101CABC9BH9B299.9°60.1°
H102CABC9BC8B106.2°59.9°
H102CABC9BH9B113.3°60.0°
H102CABC9BH9B2133.8°180.0°
C8BC9BH9B1H9B2119.7°120.1°
C9BC8BC7BH8B1118.2°120.0°
C9BC8BC7BH8B2120.0°120.1°
C9BC8BH8B1H8B2118.9°120.0°
C9BC8BC7BC2B173.6°180.0°
C9BC8BC7BH7B156.4°60.0°
C9BC8BC7BH7B266.4°59.9°
H9B1C9BC8BC7B20.4°60.1°
H9B1C9BC8BH8B1138.6°180.0°
H9B1C9BC8BH8B299.5°60.0°
H9B2C9BC8BC7B100.1°60.0°
H9B2C9BC8BH8B118.1°60.0°
H9B2C9BC8BH8B2139.9°180.0°
C7BC8BH8B1H8B2118.8°120.0°
C8BC7BC2BH7B1117.2°119.9°
C8BC7BC2BH7B2120.0°120.0°
C8BC7BH7B1H7B2118.3°119.9°
C8BC7BC2BS1B172.9°69.7°
C8BC7BC2BC4B50.1°178.3°
C8BC7BC2BH2B66.7°54.3°
H8B1C8BC7BC2B68.2°60.0°
H8B1C8BC7BH7B1174.6°180.0°
H8B1C8BC7BH7B251.7°60.1°
H8B2C8BC7BC2B53.6°59.9°
H8B2C8BC7BH7B163.6°60.0°
H8B2C8BC7BH7B2173.6°180.0°
C2BC7BH7B1H7B2118.2°120.1°
C7BC2BS1BC4B129.5°118.1°
C7BC2BS1BH2B112.2°123.9°
C7BC2BC4BH2B111.6°124.0°
C7BC2BS1BC6B175.7°149.9°
C7BC2BC4BC5B157.8°140.3°
C7BC2BC4BN2B43.8°24.8°
C7BC2BC4BH4B76.7°95.8°
H7B1C7BC2BS1B69.9°170.4°
H7B1C7BC2BC4B167.3°58.3°
H7B1C7BC2BH2B50.5°65.7°
H7B2C7BC2BS1B52.9°50.3°
H7B2C7BC2BC4B69.9°61.7°
H7B2C7BC2BH2B173.3°174.3°
S1BC2BC4BH2B121.4°118.0°
C2BS1BC6BC5B45.5°31.8°
C2BS1BC6BH6B177.2°149.8°
C2BS1BC6BH6B2165.5°86.2°
S1BC2BC4BC5B30.8°22.2°
S1BC2BC4BN2B83.2°93.3°
S1BC2BC4BH4B156.3°146.2°
C4BC2BS1BC6B46.2°31.8°
C2BC4BC5BC6B2.1°0.1°
C2BC4BC5BN1B119.9°118.4°
C2BC4BC5BN2B120.5°118.4°
C2BC4BC5BH4B119.6°123.8°
C2BC4BC5BH5B118.8°123.8°
C2BC4BN2BC3B114.0°121.6°
C2BC4BN2BH4B120.2°120.5°
C2BC4BN2BH266.0°58.4°
H2BC2BS1BC6B72.1°86.2°
H2BC2BC4BC5B90.5°95.8°
H2BC2BC4BN2B155.4°148.7°
H2BC2BC4BH4B34.9°28.2°
S1BC6BC5BH6B1122.7°118.0°
S1BC6BC5BH6B2120.0°118.1°
S1BC6BH6B1H6B2122.1°124.0°
S1BC6BC5BN1B82.2°93.3°
S1BC6BC5BC4B34.1°22.4°
S1BC6BC5BH5B156.5°145.9°
C5BC6BH6B1H6B2122.0°124.0°
C6BC5BN1BC4B121.0°121.7°
C6BC5BN1BH5B116.7°120.8°
C6BC5BC4BH5B116.7°123.7°
C6BC5BN1BC3B121.6°121.7°
C6BC5BN1BH1B58.4°58.3°
C6BC5BC4BN2B122.6°118.5°
C6BC5BC4BH4B117.5°123.6°
H6B1C6BC5BN1B155.1°24.7°
H6B1C6BC5BC4B88.6°140.4°
H6B1C6BC5BH5B33.7°96.1°
H6B2C6BC5BN1B37.8°148.7°
H6B2C6BC5BC4B154.1°95.6°
H6B2C6BC5BH5B83.6°27.9°
N1BC5BC4BH5B121.3°117.7°
C5BN1BC3BH1B180.0°180.0°
C5BN1BC3BO3B179.0°180.0°
C5BN1BC3BN2B0.3°0.0°
N1BC5BC4BN2B0.6°0.0°
N1BC5BC4BH4B120.5°117.8°
C4BC5BN1BC3B0.6°0.0°
C4BC5BN1BH1B179.4°180.0°
C5BC4BN2BC3B0.4°0.0°
C5BC4BN2BH4B125.4°117.9°
C5BC4BN2BH2179.6°180.0°
H5BC5BN1BC3B121.7°117.5°
H5BC5BN1BH1B58.2°62.5°
H5BC5BC4BN2B120.7°117.8°
H5BC5BC4BH4B0.8°0.1°
N1BC3BO3BN2B179.3°180.0°
N1BC3BN2BC4B0.1°0.0°
N1BC3BN2BH2179.9°180.0°
H1BN1BC3BO3B1.0°0.1°
H1BN1BC3BN2B179.7°180.0°
O3BC3BN2BC4B179.4°180.0°
O3BC3BN2BH20.6°0.0°
C3BN2BC4BH2180.0°180.0°
C3BN2BC4BH4B125.8°117.9°
H2N2BC4BH4B54.2°62.1°

248636

PDB entries from 2026-02-04

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