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BS5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N5'Ssing1.66Å1.61Å
NBBSsing1.66Å1.54Å
SOP1doub1.42Å1.44Å
SOP2doub1.42Å1.43Å
C6N1doub1.33Å1.35ÅAromatic
N1C2sing1.32Å1.35ÅAromatic
C2N3doub1.32Å1.34ÅAromatic
C2H2sing1.08Å1.08Å
C4N3sing1.33Å1.35ÅAromatic
C5C4doub1.40Å1.46ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C6C5sing1.41Å1.48ÅAromatic
N7C5sing1.36Å1.34ÅAromatic
N6C6sing1.38Å1.35Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
N7C8doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.47Å1.48Å
C1'C2'sing1.55Å1.52Å
C1'O4'sing1.44Å1.43Å
C1'H1'sing1.09Å1.10Å
N1BC5Bsing1.47Å1.45Å
N1BC3Bsing1.34Å1.34Å
N1BHN1Bsing0.97Å1.00Å
C6BS1Bsing1.84Å1.76Å
S1BC2Bsing1.84Å1.77Å
C2'O2'sing1.43Å1.45Å
C2'C3'sing1.55Å1.52Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C2BC4Bsing1.54Å1.53Å
C2BC7Bsing1.53Å1.53Å
C2BH2Bsing1.09Å1.10Å
C3BN2Bsing1.34Å1.33Å
C4BN2Bsing1.47Å1.46Å
N2BHN2Bsing0.97Å1.00Å
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.52Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O3BC3Bdoub1.22Å1.22Å
O4'C4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.52Å
C4'H4'sing1.09Å1.10Å
C5BC4Bsing1.53Å1.54Å
C4BH4Bsing1.09Å1.10Å
C5'N5'sing1.47Å1.46Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
N5'HN5'sing0.97Å1.00Å
C6BC5Bsing1.54Å1.53Å
C5BH5Bsing1.09Å1.10Å
C6BH6Bsing1.09Å1.10Å
C6BH6BAsing1.09Å1.10Å
C7BC8Bsing1.53Å1.53Å
C7BH7Bsing1.09Å1.10Å
C7BH7BAsing1.09Å1.10Å
C8BC9Bsing1.53Å1.53Å
C8BH8Bsing1.09Å1.10Å
C8BH8BAsing1.09Å1.10Å
C9BCABsing1.53Å1.54Å
C9BH9Bsing1.09Å1.10Å
C9BH9BAsing1.09Å1.10Å
CABCBBsing1.51Å1.52Å
CABHABsing1.09Å1.10Å
CABHABAsing1.09Å1.10Å
OCBCBBdoub1.21Å1.22Å
CBBNBBsing1.35Å1.34Å
NBBHNBBsing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N5'SNBB111.8°107.2°
N5'SOP1106.8°106.4°
N5'SOP2108.9°106.4°
SN5'C5'120.3°120.0°
SN5'HN5'106.0°120.0°
NBBSOP1111.4°106.4°
NBBSOP2107.1°106.4°
SNBBCBB121.7°120.0°
SNBBHNBB119.1°120.0°
OP1SOP2110.9°123.2°
C6N1C2122.2°121.2°
N1C6C5117.9°118.4°
N1C6N6121.9°120.8°
N1C2N3122.9°122.5°
N1C2H2118.6°118.7°
N3C2H2118.5°118.8°
C2N3C4120.8°120.6°
N3C4C5119.8°119.1°
N3C4N9134.1°134.9°
C5C4N9106.1°106.0°
C4C5C6116.4°118.2°
C4C5N7107.1°107.2°
C4N9C8109.1°107.4°
C4N9C1'123.6°126.2°
C6C5N7136.4°134.7°
C5C6N6120.2°120.8°
C5N7C8107.2°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
HN6N6HN6A109.4°120.0°
N7C8N9110.4°110.0°
N7C8H8124.8°125.1°
N9C8H8124.8°124.9°
C8N9C1'127.3°126.3°
N9C1'C2'111.7°110.6°
N9C1'O4'105.0°110.6°
N9C1'H1'110.1°110.6°
C2'C1'O4'106.8°103.5°
C2'C1'H1'108.5°110.6°
C1'C2'O2'105.4°110.9°
C1'C2'C3'104.0°102.1°
C1'C2'H2'115.9°110.9°
O4'C1'H1'114.7°110.8°
C1'O4'C4'109.1°106.9°
C5BN1BC3B110.4°109.1°
C5BN1BHN1B124.8°125.5°
N1BC5BC4B103.9°104.0°
N1BC5BC6B107.9°109.2°
N1BC5BH5B114.4°110.2°
C3BN1BHN1B124.8°125.5°
N1BC3BN2B111.7°113.9°
N1BC3BO3B124.2°123.1°
C6BS1BC2B95.2°94.8°
S1BC6BC5B104.8°102.7°
S1BC6BH6B111.1°110.8°
S1BC6BH6BA111.1°110.7°
S1BC2BC4B103.7°102.7°
S1BC2BC7B112.9°110.8°
S1BC2BH2B113.5°110.8°
O2'C2'C3'110.9°110.9°
O2'C2'H2'109.6°110.8°
C2'O2'HO2'109.5°114.0°
C3'C2'H2'110.9°110.9°
C2'C3'O3'112.8°110.5°
C2'C3'C4'101.2°104.2°
C2'C3'H3'113.5°110.5°
C4BC2BC7B115.7°110.8°
C4BC2BH2B110.6°110.8°
C2BC4BN2B112.3°109.2°
C2BC4BC5B110.2°112.4°
C2BC4BH4B105.2°110.3°
C7BC2BH2B100.9°110.8°
C2BC7BC8B109.7°109.5°
C2BC7BH7B109.4°109.5°
C2BC7BH7BA109.4°109.5°
C3BN2BC4B111.1°109.1°
C3BN2BHN2B124.4°125.5°
N2BC3BO3B124.1°123.0°
C4BN2BHN2B124.5°125.5°
N2BC4BC5B102.8°104.0°
N2BC4BH4B112.3°110.2°
O3'C3'C4'111.7°110.4°
O3'C3'H3'103.4°110.5°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'114.6°110.6°
C3'C4'O4'104.9°107.3°
C3'C4'C5'114.6°109.9°
C3'C4'H4'109.7°109.9°
O4'C4'C5'110.9°109.9°
O4'C4'H4'113.5°110.0°
C5'C4'H4'103.5°109.9°
C4'C5'N5'108.3°109.5°
C4'C5'H5'109.8°109.5°
C4'C5'H5'A109.9°109.5°
C5BC4BH4B114.3°110.6°
C4BC5BC6B110.6°112.4°
C4BC5BH5B111.9°110.3°
N5'C5'H5'109.9°109.5°
N5'C5'H5'A109.8°109.4°
C5'N5'HN5'106.0°120.0°
H5'C5'H5'A109.1°109.5°
C6BC5BH5B108.1°110.5°
C5BC6BH6B111.1°110.8°
C5BC6BH6BA111.1°110.8°
H6BC6BH6BA107.9°110.8°
C8BC7BH7B109.4°109.4°
C8BC7BH7BA109.4°109.4°
C7BC8BC9B112.0°109.5°
C7BC8BH8B108.6°109.5°
C7BC8BH8BA108.6°109.4°
H7BC7BH7BA109.6°109.5°
C9BC8BH8B108.6°109.5°
C9BC8BH8BA108.6°109.5°
C8BC9BCAB112.0°109.5°
C8BC9BH9B108.6°109.5°
C8BC9BH9BA108.7°109.5°
H8BC8BH8BA110.3°109.5°
CABC9BH9B108.6°109.4°
CABC9BH9BA108.6°109.4°
C9BCABCBB111.1°109.5°
C9BCABHAB108.9°109.5°
C9BCABHABA108.9°109.5°
H9BC9BH9BA110.2°109.5°
CBBCABHAB108.9°109.5°
CBBCABHABA109.0°109.5°
CABCBBOCB120.3°120.0°
CABCBBNBB117.8°120.0°
HABCABHABA110.0°109.5°
OCBCBBNBB121.9°120.0°
CBBNBBHNBB119.2°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N5'SNBBOP1119.4°113.5°
N5'SNBBOP2119.2°113.5°
N5'SOP1OP2118.5°123.0°
SN5'C5'C4'159.3°165.0°
SN5'C5'HN5'120.0°180.0°
SN5'C5'H5'39.3°44.9°
SN5'C5'H5'A80.8°75.1°
N5'SNBBCBB62.6°65.0°
N5'SNBBHNBB117.4°115.0°
NBBSOP1OP2119.2°122.9°
NBBSN5'C5'69.2°65.0°
NBBSN5'HN5'170.7°115.0°
SNBBCBBCAB178.3°180.0°
SNBBCBBOCB2.5°0.1°
SNBBCBBHNBB180.0°180.0°
OP1SN5'C5'168.7°178.6°
OP1SN5'HN5'48.7°1.5°
OP1SNBBCBB56.8°48.6°
OP1SNBBHNBB123.2°131.4°
OP2SN5'C5'48.9°48.5°
OP2SN5'HN5'71.1°131.5°
OP2SNBBCBB178.2°178.5°
OP2SNBBHNBB1.8°1.5°
C6N1C2N31.1°0.1°
C6N1C2H2178.9°179.9°
N1C6C5C40.3°0.1°
N1C6C5N6179.8°179.9°
N1C6C5N7179.7°179.9°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°179.9°
N1C2N3H2180.0°180.0°
N1C2N3C41.0°0.1°
C2N1C6C50.7°0.1°
C2N1C6N6179.4°180.0°
C2N3C4C50.5°0.0°
C2N3C4N9179.3°180.0°
H2C2N3C4179.0°179.9°
N3C4C5N9179.9°179.9°
N3C4C5C60.2°0.1°
N3C4C5N7179.8°179.9°
N3C4N9C8179.8°179.9°
N3C4N9C1'0.8°0.1°
C4C5C6N7179.5°180.0°
C4C5C6N6179.9°180.0°
C4C5N7C80.0°0.0°
C5C4N9C80.1°0.0°
C5C4N9C1'179.3°180.0°
N9C4C5C6179.7°180.0°
N9C4C5N70.1°0.0°
C4N9C8N70.1°0.0°
C4N9C8C1'179.4°180.0°
C4N9C8H8179.9°180.0°
C4N9C1'C2'162.7°85.0°
C4N9C1'O4'81.8°161.0°
C4N9C1'H1'42.2°37.9°
C5C6N6HN6179.8°179.9°
C5C6N6HN6A59.9°0.0°
C6C5N7C8179.5°180.0°
N7C5C6N60.4°0.0°
C5N7C8N90.0°0.0°
C5N7C8H8180.0°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°180.0°
N7C8N9C1'179.3°180.0°
C8N9C1'C2'18.0°95.0°
C8N9C1'O4'97.5°19.1°
C8N9C1'H1'138.5°142.1°
H8C8N9C1'0.7°0.0°
N9C1'C2'O4'114.3°118.4°
N9C1'C2'H1'121.5°122.9°
N9C1'O4'H1'121.0°122.9°
N9C1'C2'O2'145.4°86.3°
N9C1'C2'C3'97.8°155.5°
N9C1'C2'H2'24.1°37.2°
N9C1'O4'C4'126.1°158.6°
C2'C1'O4'H1'120.2°118.6°
C1'C2'O2'C3'111.9°112.7°
C1'C2'O2'H2'125.4°123.6°
C1'C2'C3'H2'125.2°118.3°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'O3'151.6°97.7°
C1'C2'C3'C4'32.1°20.9°
C1'C2'C3'H3'91.2°139.7°
C2'C1'O4'C4'7.4°40.1°
O4'C1'C2'O2'100.2°155.3°
O4'C1'C2'C3'16.5°37.1°
O4'C1'C2'H2'138.4°81.2°
C1'O4'C4'C3'28.4°26.6°
C1'O4'C4'C5'152.6°146.0°
C1'O4'C4'H4'91.4°93.0°
H1'C1'C2'O2'23.9°36.6°
H1'C1'C2'C3'140.7°81.7°
H1'C1'C2'H2'97.4°160.1°
H1'C1'O4'C4'112.8°78.5°
C5BN1BC3BHN1B180.0°179.8°
N1BC5BC6BS1B91.3°90.3°
N1BC5BC4BC2B119.8°118.0°
C5BN1BC3BN2B4.1°0.0°
N1BC5BC4BN2B0.0°0.0°
C5BN1BC3BO3B175.8°180.0°
N1BC5BC4BC6B115.6°118.0°
N1BC5BC4BH5B123.9°118.2°
N1BC5BC4BH4B122.0°118.3°
N1BC5BC6BH5B124.2°121.4°
N1BC5BC6BH6B28.7°28.0°
N1BC5BC6BH6BA148.7°151.4°
N1BC3BN2BO3B179.9°180.0°
N1BC3BN2BC4B4.1°0.0°
N1BC3BN2BHN2B175.9°180.0°
C3BN1BC5BC4B2.3°0.0°
C3BN1BC5BC6B115.1°120.2°
C3BN1BC5BH5B124.6°118.2°
HN1BN1BC3BN2B175.9°179.8°
HN1BN1BC3BO3B4.2°0.2°
HN1BN1BC5BC4B177.7°179.8°
HN1BN1BC5BC6B64.9°60.0°
HN1BN1BC5BH5B55.4°61.6°
C6BS1BC2BC4B36.8°34.7°
C6BS1BC2BC7B162.8°153.0°
C6BS1BC2BH2B83.2°83.6°
S1BC6BC5BC4B21.7°24.6°
S1BC6BC5BH6B120.0°118.3°
S1BC6BC5BH6BA120.0°118.3°
S1BC6BC5BH5B144.5°148.3°
S1BC6BH6BH6BA121.9°123.3°
S1BC2BC4BC7B124.2°118.3°
S1BC2BC4BH2B122.0°118.3°
S1BC2BC7BH2B121.5°123.4°
S1BC2BC4BN2B85.9°90.3°
S1BC2BC4BC5B28.0°24.6°
S1BC2BC4BH4B151.6°148.4°
C2BS1BC6BC5B34.6°34.7°
C2BS1BC6BH6B154.6°153.0°
C2BS1BC6BH6BA85.3°83.6°
S1BC2BC7BC8B172.4°66.4°
S1BC2BC7BH7B52.4°53.5°
S1BC2BC7BH7BA67.6°173.6°
O2'C2'C3'H2'121.9°123.6°
O2'C2'C3'O3'38.7°20.4°
O2'C2'C3'C4'80.8°139.1°
O2'C2'C3'H3'155.9°102.1°
C3'C2'O2'HO2'68.1°67.3°
C2'C3'O3'C4'113.2°114.7°
C2'C3'O3'H3'123.0°122.6°
C2'C3'C4'H3'122.6°118.7°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'O4'37.3°2.1°
C2'C3'C4'C5'159.1°121.5°
C2'C3'C4'H4'85.0°117.5°
H2'C2'O2'HO2'54.6°56.4°
H2'C2'C3'O3'83.2°144.0°
H2'C2'C3'C4'157.3°97.4°
H2'C2'C3'H3'34.0°21.4°
C4BC2BC7BH2B119.3°123.3°
C2BC4BN2BC3B116.0°120.2°
C2BC4BN2BC5B118.4°120.2°
C2BC4BN2BH4B118.3°121.3°
C2BC4BN2BHN2B64.1°59.8°
C2BC4BC5BH4B118.2°123.7°
C2BC4BC5BC6B4.2°0.0°
C2BC4BC5BH5B116.3°123.8°
C4BC2BC7BC8B68.4°179.8°
C4BC2BC7BH7B171.6°59.8°
C4BC2BC7BH7BA51.6°60.3°
C7BC2BC4BN2B38.3°28.1°
C7BC2BC4BC5B152.1°142.9°
C7BC2BC4BH4B84.2°93.2°
C2BC7BC8BH7B120.0°120.0°
C2BC7BC8BH7BA120.0°120.0°
C2BC7BH7BH7BA119.9°120.1°
C2BC7BC8BC9B167.5°180.0°
C2BC7BC8BH8B72.5°60.0°
C2BC7BC8BH8BA47.5°60.0°
H2BC2BC4BN2B152.1°151.4°
H2BC2BC4BC5B94.0°93.7°
H2BC2BC4BH4B29.7°30.1°
H2BC2BC7BC8B50.9°56.9°
H2BC2BC7BH7B69.1°176.9°
H2BC2BC7BH7BA170.9°63.1°
C3BN2BC4BHN2B180.0°180.0°
C3BN2BC4BC5B2.4°0.0°
C3BN2BC4BH4B125.7°118.5°
C4BN2BC3BO3B175.8°180.0°
N2BC4BC5BH4B122.0°118.3°
N2BC4BC5BC6B115.6°118.0°
N2BC4BC5BH5B123.9°118.2°
HN2BN2BC3BO3B4.3°0.0°
HN2BN2BC4BC5B177.6°180.0°
HN2BN2BC4BH4B54.3°61.5°
O3'C3'C4'H3'117.2°122.6°
O3'C3'C4'O4'157.6°120.7°
O3'C3'C4'C5'80.6°119.9°
O3'C3'C4'H4'35.3°1.1°
C4'C3'O3'HO3'66.8°176.2°
C3'C4'O4'C5'124.2°119.4°
C3'C4'O4'H4'119.8°119.6°
C3'C4'C5'H4'119.4°121.1°
C3'C4'C5'N5'179.6°175.0°
C3'C4'C5'H5'60.4°55.0°
C3'C4'C5'H5'A59.7°65.0°
H3'C3'O3'HO3'57.0°61.1°
H3'C3'C4'O4'85.3°116.7°
H3'C3'C4'C5'36.6°2.7°
H3'C3'C4'H4'152.5°123.8°
O4'C4'C5'H4'122.1°121.1°
O4'C4'C5'N5'61.1°67.2°
O4'C4'C5'H5'178.8°172.8°
O4'C4'C5'H5'A58.8°52.8°
C4'C5'N5'H5'120.0°120.1°
C4'C5'N5'H5'A120.0°120.0°
C4'C5'H5'H5'A120.5°120.0°
C4'C5'N5'HN5'39.2°15.0°
H4'C4'C5'N5'60.9°54.0°
H4'C4'C5'H5'59.1°66.1°
H4'C4'C5'H5'A179.1°174.0°
C4BC5BC6BH5B122.8°123.7°
C4BC5BC6BH6B141.7°142.9°
C4BC5BC6BH6BA98.3°93.6°
H4BC4BC5BC6B122.4°123.7°
H4BC4BC5BH5B1.9°0.1°
N5'C5'H5'H5'A120.5°120.0°
H5'C5'N5'HN5'80.8°135.0°
H5'AC5'N5'HN5'159.2°105.0°
C5BC6BH6BH6BA121.9°123.4°
H5BC5BC6BH6B95.5°93.4°
H5BC5BC6BH6BA24.5°30.0°
C8BC7BH7BH7BA119.9°119.9°
C7BC8BC9BH8B120.0°120.0°
C7BC8BC9BH8BA120.0°120.0°
C7BC8BH8BH8BA118.9°119.9°
C7BC8BC9BCAB175.8°NaN°
C7BC8BC9BH9B64.2°60.0°
C7BC8BC9BH9BA55.8°60.0°
H7BC7BC8BC9B47.5°60.0°
H7BC7BC8BH8B167.5°180.0°
H7BC7BC8BH8BA72.5°60.0°
H7BAC7BC8BC9B72.5°60.0°
H7BAC7BC8BH8B47.5°60.0°
H7BAC7BC8BH8BA167.5°180.0°
C9BC8BH8BH8BA119.0°120.1°
C8BC9BCABH9B120.0°120.0°
C8BC9BCABH9BA120.0°120.0°
C8BC9BH9BH9BA119.0°120.1°
C8BC9BCABCBB175.4°180.0°
C8BC9BCABHAB64.6°60.0°
C8BC9BCABHABA55.4°60.0°
H8BC8BC9BCAB55.8°60.0°
H8BC8BC9BH9B175.8°180.0°
H8BC8BC9BH9BA64.2°59.9°
H8BAC8BC9BCAB64.2°60.0°
H8BAC8BC9BH9B55.8°59.9°
H8BAC8BC9BH9BA175.8°180.0°
CABC9BH9BH9BA119.0°119.9°
C9BCABCBBHAB120.0°120.0°
C9BCABCBBHABA120.0°120.0°
C9BCABHABHABA119.3°120.0°
C9BCABCBBOCB61.4°0.1°
C9BCABCBBNBB117.8°180.0°
H9BC9BCABCBB55.4°60.0°
H9BC9BCABHAB175.4°180.0°
H9BC9BCABHABA64.6°60.0°
H9BAC9BCABCBB64.5°60.0°
H9BAC9BCABHAB55.4°60.0°
H9BAC9BCABHABA175.4°180.0°
CBBCABHABHABA119.4°120.0°
CABCBBOCBNBB179.2°179.9°
CABCBBNBBHNBB1.7°0.0°
HABCABCBBOCB178.6°120.0°
HABCABCBBNBB2.2°60.0°
HABACABCBBOCB58.6°119.9°
HABACABCBBNBB122.2°60.0°
OCBCBBNBBHNBB177.5°180.0°

222624

PDB entries from 2024-07-17

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