BRD
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C4 | N3 | sing | 1.40Å | 1.47Å | |
C4 | C5 | doub | 1.34Å | 1.53Å | |
C4 | HC4 | sing | 1.08Å | 1.10Å | |
N3 | C2 | sing | 1.34Å | 1.35Å | |
N3 | HN3 | sing | 0.97Å | 1.02Å | |
C2 | N1 | sing | 1.34Å | 1.37Å | |
C2 | O2 | doub | 1.21Å | 1.35Å | |
N1 | C7 | sing | 1.40Å | 1.47Å | |
N1 | C1' | sing | 1.46Å | 1.49Å | |
C7 | C6 | doub | 1.34Å | 1.51Å | |
C7 | HC7 | sing | 1.08Å | 1.10Å | |
C6 | C5 | sing | 1.47Å | 1.36Å | |
C6 | HC6 | sing | 1.08Å | 1.10Å | |
C1' | O4' | sing | 1.44Å | 1.42Å | |
C1' | C2' | sing | 1.55Å | 1.54Å | |
C1' | H1' | sing | 1.09Å | 1.12Å | |
O4' | C4' | sing | 1.44Å | 1.42Å | |
C4' | C3' | sing | 1.54Å | 1.55Å | |
C4' | C5' | sing | 1.53Å | 1.55Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
C3' | C2' | sing | 1.55Å | 1.53Å | |
C3' | O3' | sing | 1.43Å | 1.41Å | |
C3' | H3'1 | sing | 1.09Å | 1.11Å | |
C2' | O2' | sing | 1.43Å | 1.41Å | |
C2' | H2' | sing | 1.09Å | 1.12Å | |
O2' | H2'1 | sing | 0.97Å | 0.95Å | |
O3' | H3' | sing | 0.97Å | 0.95Å | |
C5' | O5' | sing | 1.43Å | 1.41Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.11Å | |
O5' | H5' | sing | 0.97Å | 0.95Å | |
C5 | HC5 | sing | 1.08Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
N3 | C4 | C5 | 119.5° | 128.3° |
N3 | C4 | HC4 | 118.2° | 115.8° |
C4 | N3 | C2 | 129.7° | 129.2° |
C4 | N3 | HN3 | 105.2° | 115.4° |
C5 | C4 | HC4 | 122.2° | 115.8° |
C4 | C5 | C6 | 127.1° | 127.7° |
C4 | C5 | HC5 | 123.2° | 116.1° |
C2 | N3 | HN3 | 105.2° | 115.5° |
N3 | C2 | N1 | 127.6° | 129.6° |
N3 | C2 | O2 | 112.7° | 115.2° |
N1 | C2 | O2 | 119.6° | 115.2° |
C2 | N1 | C7 | 118.2° | 129.2° |
C2 | N1 | C1' | 119.7° | 115.4° |
C7 | N1 | C1' | 122.1° | 115.4° |
N1 | C7 | C6 | 110.3° | 128.3° |
N1 | C7 | HC7 | 123.8° | 115.8° |
N1 | C1' | O4' | 112.4° | 110.6° |
N1 | C1' | C2' | 113.1° | 110.8° |
N1 | C1' | H1' | 103.7° | 110.5° |
C6 | C7 | HC7 | 125.9° | 115.9° |
C7 | C6 | C5 | 124.7° | 127.8° |
C7 | C6 | HC6 | 123.3° | 116.1° |
C5 | C6 | HC6 | 112.0° | 116.1° |
C6 | C5 | HC5 | 109.7° | 116.2° |
O4' | C1' | C2' | 106.0° | 103.5° |
O4' | C1' | H1' | 111.2° | 110.6° |
C1' | O4' | C4' | 110.0° | 107.0° |
C2' | C1' | H1' | 110.5° | 110.6° |
C1' | C2' | C3' | 102.8° | 102.1° |
C1' | C2' | O2' | 110.8° | 111.0° |
C1' | C2' | H2' | 113.5° | 110.9° |
O4' | C4' | C3' | 108.5° | 107.4° |
O4' | C4' | C5' | 108.5° | 109.9° |
O4' | C4' | H4' | 112.5° | 109.9° |
C3' | C4' | C5' | 114.1° | 109.9° |
C3' | C4' | H4' | 106.6° | 109.9° |
C4' | C3' | C2' | 101.9° | 104.0° |
C4' | C3' | O3' | 109.6° | 110.8° |
C4' | C3' | H3'1 | 114.6° | 110.5° |
C5' | C4' | H4' | 106.7° | 109.8° |
C4' | C5' | O5' | 111.7° | 109.5° |
C4' | C5' | H5'1 | 111.4° | 109.4° |
C4' | C5' | H5'2 | 111.4° | 109.4° |
C2' | C3' | O3' | 110.5° | 110.5° |
C2' | C3' | H3'1 | 113.7° | 110.5° |
C3' | C2' | O2' | 111.2° | 110.9° |
C3' | C2' | H2' | 113.2° | 111.0° |
O3' | C3' | H3'1 | 106.6° | 110.4° |
C3' | O3' | H3' | 109.5° | 106.8° |
O2' | C2' | H2' | 105.4° | 110.8° |
C2' | O2' | H2'1 | 110.8° | 106.8° |
O5' | C5' | H5'1 | 111.4° | 109.5° |
O5' | C5' | H5'2 | 111.4° | 109.5° |
C5' | O5' | H5' | 111.7° | 106.8° |
H5'1 | C5' | H5'2 | 99.0° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N3 | C4 | C5 | HC4 | 179.9° | 180.0° |
C4 | N3 | C2 | HN3 | 125.3° | 179.7° |
C4 | N3 | C2 | N1 | 27.6° | 0.8° |
C4 | N3 | C2 | O2 | 155.4° | 180.0° |
N3 | C4 | C5 | C6 | 17.8° | 0.1° |
N3 | C4 | C5 | HC5 | 162.2° | 180.0° |
C5 | C4 | N3 | C2 | 15.9° | 0.4° |
C5 | C4 | N3 | HN3 | 109.4° | 179.9° |
C4 | C5 | C6 | C7 | 3.4° | 0.1° |
C4 | C5 | C6 | HC5 | 180.0° | 179.9° |
C4 | C5 | C6 | HC6 | 176.7° | 180.0° |
HC4 | C4 | N3 | C2 | 164.2° | 179.6° |
HC4 | C4 | N3 | HN3 | 70.6° | 0.0° |
HC4 | C4 | C5 | C6 | 162.1° | 179.9° |
HC4 | C4 | C5 | HC5 | 17.8° | 0.0° |
N3 | C2 | N1 | O2 | 176.9° | 179.2° |
N3 | C2 | N1 | C7 | 25.1° | 0.8° |
N3 | C2 | N1 | C1' | 156.4° | 179.6° |
HN3 | N3 | C2 | N1 | 97.7° | 179.5° |
HN3 | N3 | C2 | O2 | 79.4° | 0.3° |
C2 | N1 | C7 | C1' | 178.5° | 179.7° |
C2 | N1 | C7 | C6 | 74.3° | 0.3° |
C2 | N1 | C7 | HC7 | 105.7° | 179.7° |
C2 | N1 | C1' | O4' | 122.3° | 58.3° |
C2 | N1 | C1' | C2' | 117.7° | 55.9° |
C2 | N1 | C1' | H1' | 2.1° | 178.8° |
O2 | C2 | N1 | C7 | 151.8° | 180.0° |
O2 | C2 | N1 | C1' | 26.7° | 0.4° |
N1 | C7 | C6 | HC7 | 179.9° | 180.0° |
N1 | C7 | C6 | C5 | 59.3° | 0.1° |
N1 | C7 | C6 | HC6 | 120.8° | 180.0° |
C7 | N1 | C1' | O4' | 59.2° | 121.4° |
C7 | N1 | C1' | C2' | 60.8° | 124.4° |
C7 | N1 | C1' | H1' | 179.5° | 1.4° |
C1' | N1 | C7 | C6 | 107.2° | 180.0° |
C1' | N1 | C7 | HC7 | 72.8° | 0.0° |
N1 | C1' | O4' | C2' | 124.1° | 118.7° |
N1 | C1' | O4' | H1' | 115.8° | 122.8° |
N1 | C1' | C2' | H1' | 115.8° | 122.9° |
N1 | C1' | O4' | C4' | 145.4° | 158.7° |
N1 | C1' | C2' | C3' | 156.0° | 155.7° |
N1 | C1' | C2' | O2' | 85.1° | 86.1° |
N1 | C1' | C2' | H2' | 33.3° | 37.4° |
C7 | C6 | C5 | HC6 | 180.0° | 179.9° |
C7 | C6 | C5 | HC5 | 176.6° | 180.0° |
HC7 | C7 | C6 | C5 | 120.7° | 179.9° |
HC7 | C7 | C6 | HC6 | 59.3° | 0.0° |
HC6 | C6 | C5 | HC5 | 3.4° | 0.1° |
O4' | C1' | C2' | H1' | 120.6° | 118.5° |
C1' | O4' | C4' | C3' | 1.6° | 26.4° |
C1' | O4' | C4' | C5' | 126.1° | 146.0° |
C1' | O4' | C4' | H4' | 116.1° | 93.1° |
O4' | C1' | C2' | C3' | 32.4° | 37.1° |
O4' | C1' | C2' | O2' | 151.3° | 155.3° |
O4' | C1' | C2' | H2' | 90.3° | 81.2° |
C2' | C1' | O4' | C4' | 21.4° | 40.0° |
C1' | C2' | C3' | C4' | 29.8° | 21.0° |
C1' | C2' | C3' | O2' | 118.6° | 118.2° |
C1' | C2' | C3' | H2' | 122.9° | 118.2° |
C1' | C2' | C3' | O3' | 86.6° | 98.0° |
C1' | C2' | C3' | H3'1 | 153.6° | 139.5° |
C1' | C2' | O2' | H2' | 123.3° | 123.6° |
C1' | C2' | O2' | H2'1 | 179.9° | 180.0° |
H1' | C1' | O4' | C4' | 98.7° | 78.4° |
H1' | C1' | C2' | C3' | 88.2° | 81.4° |
H1' | C1' | C2' | O2' | 30.7° | 36.8° |
H1' | C1' | C2' | H2' | 149.1° | 160.3° |
O4' | C4' | C3' | C5' | 121.0° | 119.5° |
O4' | C4' | C3' | H4' | 121.4° | 119.5° |
O4' | C4' | C5' | H4' | 121.4° | 121.0° |
O4' | C4' | C3' | C2' | 18.6° | 1.9° |
O4' | C4' | C3' | O3' | 98.4° | 120.6° |
O4' | C4' | C3' | H3'1 | 141.8° | 116.7° |
O4' | C4' | C5' | O5' | 89.7° | 61.7° |
O4' | C4' | C5' | H5'1 | 35.5° | 58.3° |
O4' | C4' | C5' | H5'2 | 145.0° | 178.3° |
C3' | C4' | C5' | H4' | 117.5° | 121.0° |
C4' | C3' | C2' | O3' | 116.4° | 119.0° |
C4' | C3' | C2' | H3'1 | 123.8° | 118.6° |
C4' | C3' | O3' | H3'1 | 124.5° | 122.7° |
C4' | C3' | C2' | O2' | 148.4° | 139.2° |
C4' | C3' | C2' | H2' | 93.1° | 97.2° |
C4' | C3' | O3' | H3' | 180.0° | 65.2° |
C3' | C4' | C5' | O5' | 31.4° | 179.7° |
C3' | C4' | C5' | H5'1 | 156.6° | 59.7° |
C3' | C4' | C5' | H5'2 | 93.9° | 60.3° |
C5' | C4' | C3' | C2' | 102.4° | 121.4° |
C5' | C4' | C3' | O3' | 140.6° | 119.8° |
C5' | C4' | C3' | H3'1 | 20.8° | 2.8° |
C4' | C5' | O5' | H5'1 | 125.2° | 120.0° |
C4' | C5' | O5' | H5'2 | 125.3° | 120.0° |
C4' | C5' | H5'1 | H5'2 | 117.3° | 120.0° |
C4' | C5' | O5' | H5' | 180.0° | 180.0° |
H4' | C4' | C3' | C2' | 140.0° | 117.6° |
H4' | C4' | C3' | O3' | 23.0° | 1.1° |
H4' | C4' | C3' | H3'1 | 96.8° | 123.8° |
H4' | C4' | C5' | O5' | 148.9° | 59.3° |
H4' | C4' | C5' | H5'1 | 85.9° | 179.3° |
H4' | C4' | C5' | H5'2 | 23.7° | 60.7° |
C2' | C3' | O3' | H3'1 | 124.0° | 122.5° |
C3' | C2' | O2' | H2' | 123.1° | 123.7° |
C3' | C2' | O2' | H2'1 | 66.4° | 67.3° |
C2' | C3' | O3' | H3' | 68.5° | 180.0° |
O3' | C3' | C2' | O2' | 32.0° | 20.2° |
O3' | C3' | C2' | H2' | 150.6° | 143.8° |
H3'1 | C3' | C2' | O2' | 87.8° | 102.2° |
H3'1 | C3' | C2' | H2' | 30.7° | 21.4° |
H3'1 | C3' | O3' | H3' | 55.5° | 57.5° |
H2' | C2' | O2' | H2'1 | 56.7° | 56.4° |
O5' | C5' | H5'1 | H5'2 | 117.3° | 120.0° |
H5'1 | C5' | O5' | H5' | 54.7° | 60.0° |
H5'2 | C5' | O5' | H5' | 54.8° | 60.1° |