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SummaryGeometryRelated PDB entries

BR5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CA1CB2sing1.51Å1.44Å
CA1HA11sing1.09Å1.12Å
CA1HA12sing1.10Å1.11Å
CA1HA13sing1.09Å1.12Å
CB2Osing1.42Å1.42Å
CB2HB21sing1.09Å1.11Å
CB2HB22sing1.09Å1.12Å
OCZ2sing1.42Å1.39Å
CZ2CA2sing1.52Å1.53Å
CZ2HZ21sing1.09Å1.11Å
CZ2HZ22sing1.09Å1.11Å
CA2Psing1.81Å1.75Å
CA2HA21sing1.09Å1.12Å
CA2HA22sing1.09Å1.12Å
POP1sing1.52Å1.53Å
POP2doub1.52Å1.50Å
HP1Psing1.42Å1.42Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CB2CA1HA11100.4°110.9°
CB2CA1HA12115.7°110.7°
CB2CA1HA13115.7°110.6°
CA1CB2O100.4°109.0°
CA1CB2HB21115.7°110.5°
CA1CB2HB22115.6°110.5°
HA11CA1HA12115.7°108.8°
HA11CA1HA13115.6°108.9°
HA12CA1HA1394.7°106.9°
OCB2HB21115.7°108.8°
OCB2HB22115.7°108.8°
CB2OCZ2124.7°111.5°
HB21CB2HB2294.8°109.2°
OCZ2CA2120.1°109.0°
OCZ2HZ21108.4°108.4°
OCZ2HZ22108.4°108.7°
CA2CZ2HZ21108.4°110.5°
CA2CZ2HZ22108.4°110.9°
CZ2CA2P115.5°112.4°
CZ2CA2HA21110.0°110.6°
CZ2CA2HA22110.0°110.0°
HZ21CZ2HZ22101.6°109.4°
PCA2HA21110.0°107.4°
PCA2HA22110.0°107.7°
CA2POP1111.4°105.6°
CA2POP2113.6°105.6°
CA2PHP1106.6°104.1°
HA21CA2HA22100.2°108.6°
OP1POP2113.5°118.5°
OP1PHP1106.7°110.9°
OP2PHP1104.2°110.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CB2CA1HA11HA12125.3°121.9°
CB2CA1HA11HA13125.2°122.0°
CB2CA1HA12HA13121.5°120.5°
CA1CB2OHB21125.3°120.5°
CA1CB2OHB22125.2°120.6°
CA1CB2HB21HB22121.5°121.7°
CA1CB2OCZ2159.3°180.0°
HA11CA1HA12HA13121.5°117.4°
HA11CA1CB2O180.0°180.0°
HA11CA1CB2HB2154.8°60.5°
HA11CA1CB2HB2254.7°60.4°
HA12CA1CB2O54.7°59.2°
HA12CA1CB2HB2170.6°178.7°
HA12CA1CB2HB22179.9°60.4°
HA13CA1CB2O54.8°59.1°
HA13CA1CB2HB21180.0°60.4°
HA13CA1CB2HB2270.5°178.6°
OCB2HB21HB22121.5°118.7°
CB2OCZ2CA2178.2°179.8°
CB2OCZ2HZ2152.9°59.9°
CB2OCZ2HZ2256.6°58.9°
HB21CB2OCZ234.1°59.5°
HB22CB2OCZ275.5°59.4°
OCZ2CA2HZ21125.3°119.0°
OCZ2CA2HZ22125.2°119.6°
OCZ2HZ21HZ22114.0°118.3°
OCZ2CA2P73.8°60.1°
OCZ2CA2HA21160.9°60.0°
OCZ2CA2HA2251.4°179.9°
CA2CZ2HZ21HZ22114.1°122.3°
CZ2CA2PHA21125.3°121.9°
CZ2CA2PHA22125.3°121.3°
CZ2CA2HA21HA22115.8°120.8°
CZ2CA2POP134.5°176.8°
CZ2CA2POP2164.2°56.9°
CZ2CA2PHP181.6°59.9°
HZ21CZ2CA2P51.4°179.0°
HZ21CZ2CA2HA2173.9°58.9°
HZ21CZ2CA2HA22176.7°61.0°
HZ22CZ2CA2P160.9°59.5°
HZ22CZ2CA2HA2135.6°179.6°
HZ22CZ2CA2HA2273.8°60.5°
PCA2HA21HA22115.8°116.2°
CA2POP1OP2129.7°118.0°
CA2POP1HP1116.0°112.2°
CA2POP2HP1115.6°112.2°
HA21CA2POP190.8°54.9°
HA21CA2POP238.9°178.8°
HA21CA2PHP1153.1°61.9°
HA22CA2POP1159.8°61.8°
HA22CA2POP270.5°64.5°
HA22CA2PHP143.7°178.7°
OP1POP2HP1115.7°129.8°

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PDB entries from 2026-02-04

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