BQL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5	C6	doub	1.35Å	1.38Å
C5	C4	sing	1.42Å	1.38Å
C6	N1	sing	1.37Å	1.33Å
O4	C4	doub	1.22Å	1.25Å
C4	N3	sing	1.35Å	1.34Å
N1	C1'	sing	1.46Å	1.46Å
N1	C2	sing	1.35Å	1.42Å
O3	C2'	sing	1.43Å	1.43Å
C1'	C2'	sing	1.55Å	1.51Å
C1'	O4'	sing	1.44Å	1.42Å
N3	C2	sing	1.35Å	1.34Å
C2'	C3'	sing	1.55Å	1.51Å
C2	O2	doub	1.22Å	1.25Å
O4'	C3	sing	1.44Å	1.42Å
O1	C3'	sing	1.43Å	1.42Å
C3'	C3	sing	1.54Å	1.51Å
C3	C5'	sing	1.53Å	1.52Å
N	CA	sing	1.47Å	1.49Å
O	C	doub	1.21Å	1.25Å
O5'	C5'	sing	1.43Å	1.42Å
O5'	P	sing	1.61Å	1.60Å
CA	C	sing	1.51Å	1.50Å
CA	CB	sing	1.53Å	1.52Å
OP2	P	doub	1.48Å	1.49Å
P	OP3	sing	1.61Å	1.60Å
P	OP1	sing	1.61Å	1.50Å
OP3	CB	sing	1.43Å	1.42Å
N	H1	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CA	H4	sing	1.09Å	1.10Å
C	H5	sing	1.08Å	1.08Å
CB	H6	sing	1.09Å	1.10Å
CB	H7	sing	1.09Å	1.10Å
C1'	H8	sing	1.09Å	1.10Å
C2'	H9	sing	1.09Å	1.10Å
C3	H10	sing	1.09Å	1.10Å
C3'	H11	sing	1.09Å	1.10Å
C5	H12	sing	1.08Å	1.08Å
C5'	H13	sing	1.09Å	1.10Å
C5'	H14	sing	1.09Å	1.10Å
C6	H15	sing	1.08Å	1.08Å
N3	H16	sing	0.97Å	1.00Å
O1	H17	sing	0.97Å	0.95Å
O3	H18	sing	0.97Å	0.95Å
OP1	H19	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	C5	C4	119.2°	119.1°
C5	C6	N1	119.9°	119.7°
C6	C5	H12	120.4°	120.4°
C5	C6	H15	120.1°	120.1°
C5	C4	O4	119.5°	120.3°
C5	C4	N3	120.4°	119.4°
C4	C5	H12	120.4°	120.5°
C6	N1	C1'	115.6°	119.7°
C6	N1	C2	120.2°	120.6°
N1	C6	H15	120.1°	120.2°
O4	C4	N3	120.1°	120.3°
C4	N3	C2	121.3°	120.3°
C4	N3	H16	119.3°	119.8°
C1'	N1	C2	124.2°	119.7°
N1	C1'	C2'	108.0°	110.6°
N1	C1'	O4'	112.6°	110.6°
N1	C1'	H8	109.2°	110.7°
N1	C2	N3	119.0°	121.0°
N1	C2	O2	123.2°	119.5°
O3	C2'	C1'	108.0°	110.9°
O3	C2'	C3'	111.0°	110.9°
O3	C2'	H9	111.7°	110.9°
C2'	O3	H18	109.5°	114.0°
C2'	C1'	O4'	108.7°	103.5°
C1'	C2'	C3'	105.0°	102.1°
C2'	C1'	H8	108.6°	110.6°
C1'	C2'	H9	110.5°	110.9°
C1'	O4'	C3	110.4°	107.0°
O4'	C1'	H8	109.7°	110.6°
N3	C2	O2	117.8°	119.5°
C2	N3	H16	119.3°	119.9°
C2'	C3'	O1	109.5°	110.5°
C2'	C3'	C3	106.7°	104.2°
C3'	C2'	H9	110.5°	110.9°
C2'	C3'	H11	110.3°	110.5°
O4'	C3	C3'	107.4°	107.3°
O4'	C3	C5'	109.3°	109.9°
O4'	C3	H10	110.1°	110.0°
O1	C3'	C3	108.3°	110.5°
O1	C3'	H11	111.6°	110.5°
C3'	O1	H17	109.5°	114.0°
C3'	C3	C5'	112.4°	109.9°
C3'	C3	H10	108.9°	109.8°
C3	C3'	H11	110.3°	110.5°
C3	C5'	O5'	108.0°	109.4°
C5'	C3	H10	108.8°	109.9°
C3	C5'	H13	109.9°	109.5°
C3	C5'	H14	109.8°	109.5°
N	CA	C	113.3°	109.5°
N	CA	CB	109.5°	109.5°
CA	N	H1	109.5°	111.0°
CA	N	H2	109.5°	111.0°
N	CA	H4	108.5°	109.5°
O	C	CA	119.9°	120.0°
O	C	H5	120.1°	120.0°
C5'	O5'	P	121.3°	123.0°
O5'	C5'	H13	109.9°	109.5°
O5'	C5'	H14	109.8°	109.5°
O5'	P	OP2	110.3°	109.5°
O5'	P	OP3	110.4°	109.5°
O5'	P	OP1	110.8°	109.4°
C	CA	CB	109.1°	109.4°
C	CA	H4	108.3°	109.5°
CA	C	H5	120.0°	120.0°
CA	CB	OP3	110.2°	109.4°
CB	CA	H4	108.1°	109.5°
CA	CB	H6	109.3°	109.5°
CA	CB	H7	109.3°	109.5°
OP2	P	OP3	105.1°	109.5°
OP2	P	OP1	108.1°	109.5°
OP3	P	OP1	111.9°	109.5°
P	OP3	CB	117.1°	123.0°
P	OP1	H19	109.5°	114.0°
OP3	CB	H6	109.3°	109.5°
OP3	CB	H7	109.3°	109.5°
H1	N	H2	109.5°	111.0°
H6	CB	H7	109.5°	109.5°
H13	C5'	H14	109.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C6	C5	C4	H12	180.0°	179.7°
C5	C6	N1	H15	180.0°	179.7°
C6	C5	C4	O4	179.5°	179.7°
C6	C5	C4	N3	1.6°	0.3°
C5	C6	N1	C1'	179.0°	180.0°
C5	C6	N1	C2	0.0°	0.0°
C4	C5	C6	N1	1.1°	0.3°
C5	C4	O4	N3	178.8°	180.0°
C5	C4	N3	C2	0.9°	0.0°
C4	C5	C6	H15	178.8°	180.0°
C5	C4	N3	H16	179.0°	179.9°
C6	N1	C1'	C2	179.0°	180.0°
C6	N1	C1'	C2'	98.8°	115.0°
C6	N1	C1'	O4'	141.1°	131.0°
C6	N1	C2	N3	0.7°	0.3°
C6	N1	C2	O2	179.3°	180.0°
C6	N1	C1'	H8	19.1°	8.0°
N1	C6	C5	H12	178.9°	180.0°
O4	C4	N3	C2	179.8°	180.0°
O4	C4	C5	H12	0.4°	0.0°
O4	C4	N3	H16	0.2°	0.1°
C4	N3	C2	N1	0.2°	0.2°
C4	N3	C2	H16	180.0°	179.8°
C4	N3	C2	O2	179.8°	180.0°
N3	C4	C5	H12	178.4°	180.0°
N1	C1'	C2'	O3	109.5°	86.3°
N1	C1'	C2'	O4'	122.5°	118.5°
N1	C1'	C2'	H8	118.3°	123.0°
N1	C1'	O4'	H8	121.8°	123.0°
C1'	N1	C2	N3	179.6°	179.8°
N1	C1'	C2'	C3'	132.1°	155.5°
C1'	N1	C2	O2	0.4°	0.0°
N1	C1'	O4'	C3	133.8°	158.6°
N1	C1'	C2'	H9	13.0°	37.3°
C1'	N1	C6	H15	1.0°	0.3°
C2	N1	C1'	C2'	80.1°	65.0°
C2	N1	C1'	O4'	39.9°	49.1°
N1	C2	N3	O2	180.0°	179.8°
C2	N1	C1'	H8	162.0°	172.0°
C2	N1	C6	H15	180.0°	179.7°
N1	C2	N3	H16	179.8°	179.6°
O3	C2'	C1'	C3'	118.4°	118.2°
O3	C2'	C1'	H9	122.5°	123.6°
O3	C2'	C1'	O4'	128.0°	155.2°
O3	C2'	C3'	H9	124.5°	123.6°
O3	C2'	C3'	O1	1.3°	20.3°
O3	C2'	C3'	C3	118.4°	139.1°
O3	C2'	C1'	H8	8.8°	36.7°
O3	C2'	C3'	H11	121.8°	102.3°
C2'	C1'	O4'	H8	118.5°	118.5°
C1'	C2'	C3'	H9	119.2°	118.2°
C2'	C1'	O4'	C3	14.1°	40.1°
C1'	C2'	C3'	O1	115.1°	97.8°
C1'	C2'	C3'	C3	2.0°	20.9°
C1'	C2'	C3'	H11	121.8°	139.5°
C1'	C2'	O3	H18	180.0°	180.0°
O4'	C1'	C2'	C3'	9.6°	37.1°
C1'	O4'	C3	C3'	12.6°	26.5°
C1'	O4'	C3	C5'	134.8°	145.9°
O4'	C1'	C2'	H9	109.5°	81.1°
C1'	O4'	C3	H10	105.8°	92.9°
C2'	C3'	C3	O4'	6.2°	2.0°
C2'	C3'	O1	C3	116.1°	114.8°
C2'	C3'	O1	H11	122.4°	122.6°
C2'	C3'	C3	H11	119.8°	118.6°
C2'	C3'	C3	C5'	126.4°	121.5°
C3'	C2'	C1'	H8	109.6°	81.4°
C2'	C3'	C3	H10	113.0°	117.6°
C2'	C3'	O1	H17	180.0°	61.4°
C3'	C2'	O3	H18	65.5°	67.4°
O2	C2	N3	H16	0.2°	0.2°
O4'	C3	C3'	O1	124.0°	120.7°
O4'	C3	C3'	C5'	120.2°	119.4°
O4'	C3	C3'	H10	119.2°	119.6°
O4'	C3	C5'	H10	120.2°	121.2°
O4'	C3	C5'	O5'	61.4°	66.9°
C3	O4'	C1'	H8	104.4°	78.4°
O4'	C3	C3'	H11	113.6°	116.6°
O4'	C3	C5'	H13	178.8°	173.1°
O4'	C3	C5'	H14	58.3°	53.1°
O1	C3'	C3	H11	122.3°	122.6°
O1	C3'	C3	C5'	115.7°	119.8°
O1	C3'	C2'	H9	125.8°	144.0°
O1	C3'	C3	H10	4.8°	1.2°
C3'	C3	C5'	H10	120.6°	120.9°
C3'	C3	C5'	O5'	179.5°	175.3°
C3	C3'	C2'	H9	117.2°	97.3°
C3'	C3	C5'	H13	59.7°	55.3°
C3'	C3	C5'	H14	60.8°	64.8°
C3	C3'	O1	H17	64.0°	176.2°
C3	C5'	O5'	H13	119.8°	120.0°
C3	C5'	O5'	H14	119.7°	120.0°
C3	C5'	O5'	P	138.3°	180.0°
C5'	C3	C3'	H11	6.6°	2.8°
C3	C5'	H13	H14	120.7°	120.0°
N	CA	C	O	137.8°	0.0°
N	CA	C	CB	122.2°	120.0°
N	CA	C	H4	120.4°	120.1°
N	CA	CB	H4	118.0°	120.0°
N	CA	CB	OP3	60.2°	65.0°
CA	N	H1	H2	120.0°	124.0°
N	CA	C	H5	42.2°	180.0°
N	CA	CB	H6	59.9°	55.0°
N	CA	CB	H7	179.6°	175.0°
O	C	CA	H5	180.0°	180.0°
O	C	CA	CB	100.0°	120.0°
O	C	CA	H4	17.4°	120.0°
C5'	O5'	P	OP2	94.7°	55.0°
C5'	O5'	P	OP3	149.5°	175.0°
C5'	O5'	P	OP1	25.0°	65.0°
O5'	C5'	C3	H10	58.8°	54.3°
O5'	C5'	H13	H14	120.7°	120.0°
O5'	P	OP2	OP3	119.0°	120.0°
O5'	P	OP2	OP1	121.3°	120.0°
O5'	P	OP3	OP1	123.9°	120.0°
O5'	P	OP3	CB	132.1°	175.0°
P	O5'	C5'	H13	18.5°	60.0°
P	O5'	C5'	H14	102.0°	60.0°
O5'	P	OP1	H19	121.0°	60.0°
C	CA	CB	H4	117.6°	120.0°
C	CA	CB	OP3	175.3°	175.0°
C	CA	N	H1	180.0°	64.0°
C	CA	N	H2	60.0°	60.0°
C	CA	CB	H6	64.6°	65.0°
C	CA	CB	H7	55.2°	55.0°
CA	CB	OP3	P	100.0°	180.0°
CA	CB	OP3	H6	120.1°	120.0°
CA	CB	OP3	H7	120.1°	120.0°
CB	CA	N	H1	58.0°	176.0°
CB	CA	N	H2	178.1°	59.9°
CB	CA	C	H5	80.0°	60.0°
CA	CB	H6	H7	119.6°	120.0°
OP2	P	OP3	OP1	117.1°	120.0°
OP2	P	OP3	CB	13.2°	55.0°
OP2	P	OP1	H19	0.0°	180.0°
P	OP3	CB	H6	139.9°	60.0°
P	OP3	CB	H7	20.1°	60.0°
OP3	P	OP1	H19	115.3°	60.0°
OP1	P	OP3	CB	104.0°	65.0°
OP3	CB	CA	H4	57.7°	55.0°
OP3	CB	H6	H7	119.7°	120.0°
H1	N	CA	H4	59.7°	56.0°
H2	N	CA	H4	60.3°	179.9°
H4	CA	C	H5	162.6°	60.0°
H4	CA	CB	H6	177.8°	175.0°
H4	CA	CB	H7	62.4°	65.0°
H8	C1'	C2'	H9	131.2°	160.4°
H9	C2'	C3'	H11	2.6°	21.3°
H9	C2'	O3	H18	58.2°	56.3°
H10	C3	C3'	H11	127.2°	123.8°
H10	C3	C5'	H13	61.0°	65.7°
H10	C3	C5'	H14	178.6°	174.3°
H11	C3'	O1	H17	57.6°	61.2°
H12	C5	C6	H15	1.1°	0.3°

Release date:	2019-03-20
Definition date:	2019-03-04
Last modified:	2019-03-15
Release status:	REL
Processing site:	PDBJ
Derived from:	6J5V