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SummaryGeometryPCM/PTMRelated PDB entries

BOZ

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C1C2sing1.41Å1.44ÅAromatic
C1C6doub1.39Å1.43ÅAromatic
C1C7sing1.50Å1.42Å
C2C3doub1.38Å1.42ÅAromatic
C2H2sing0.94Å1.08Å
C3C4sing1.39Å1.42ÅAromatic
C3H3sing0.95Å1.08Å
C4C5doub1.40Å1.38ÅAromatic
C4N3sing1.38Å1.34ÅAromatic
C5C6sing1.39Å1.40ÅAromatic
C5N4sing1.37Å1.34ÅAromatic
C6H6sing0.93Å1.08Å
C7N1sing1.36Å1.33Å
C7N2doub1.31Å1.33Å
N1HN11sing0.89Å1.00Å
N1HN12sing0.88Å1.00Å
N2HN21sing0.89Å1.00Å
N3C8doub1.31Å1.32ÅAromatic
N4C8sing1.36Å1.35ÅAromatic
N4HN4sing0.89Å1.00Å
C8C9sing1.47Å1.43Å
C1'C2'sing1.41Å1.42ÅAromatic
C1'C6'doub1.39Å1.43ÅAromatic
C1'C7'sing1.51Å1.43Å
C2'C3'doub1.38Å1.42ÅAromatic
C2'H2'sing0.94Å1.08Å
C3'C4'sing1.39Å1.39ÅAromatic
C3'H3'sing0.95Å1.08Å
C4'C5'doub1.40Å1.36ÅAromatic
C4'N3'sing1.39Å1.34ÅAromatic
C5'C6'sing1.39Å1.40ÅAromatic
C5'N4'sing1.37Å1.34ÅAromatic
C6'H6'sing0.93Å1.08Å
C7'N1'sing1.36Å1.34Å
C7'N2'doub1.31Å1.34Å
N1'H1'1sing0.89Å1.00Å
N1'H1'2sing0.88Å1.00Å
N2'H2'1sing0.89Å1.00Å
N3'C8'doub1.32Å1.32ÅAromatic
N3'ZNsing2.06Å1.91Å
N4'C8'sing1.36Å1.33ÅAromatic
N4'HN4'sing0.89Å1.00Å
C8'C9sing1.47Å1.43Å
C9O9doub1.23Å1.25Å
ZNN3sing2.04Å2.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C2C1C6116.6°118.5°
C2C1C7122.0°123.3°
C1C2C3123.5°122.5°
C1C2H2118.2°119.7°
C6C1C7121.3°118.2°
C1C6C5120.2°119.1°
C1C6H6119.9°120.8°
C1C7N1121.6°120.7°
C1C7N2121.4°121.1°
C3C2H2118.3°117.8°
C2C3C4116.0°118.1°
C2C3H3122.0°121.1°
C4C3H3122.0°120.8°
C3C4C5122.3°120.2°
C3C4N3127.7°130.7°
C5C4N3110.0°109.1°
C4C5C6121.4°121.5°
C4C5N4109.3°105.5°
C4N3C8102.0°106.2°
C4N3ZN133.3°120.7°
C6C5N4129.3°133.0°
C5C6H6119.9°120.1°
C5N4C8102.0°107.5°
C5N4HN4129.0°126.2°
N1C7N2117.1°118.2°
C7N1HN11120.0°120.3°
C7N1HN12120.0°123.4°
C7N2HN21112.0°118.4°
HN11N1HN12120.0°116.3°
N3C8N4116.7°111.7°
N3C8C9122.3°121.7°
C8N3ZN124.7°92.5°
C8N4HN4129.0°126.3°
N4C8C9121.0°126.4°
C8C9C8'126.1°116.3°
C8C9O9115.9°121.8°
C2'C1'C6'115.9°118.5°
C2'C1'C7'121.0°123.3°
C1'C2'C3'122.2°122.5°
C1'C2'H2'118.9°119.7°
C6'C1'C7'123.0°118.2°
C1'C6'C5'121.1°119.2°
C1'C6'H6'119.4°120.8°
C1'C7'N1'122.8°120.8°
C1'C7'N2'122.9°121.1°
C3'C2'H2'118.9°117.8°
C2'C3'C4'118.2°118.2°
C2'C3'H3'120.9°121.0°
C4'C3'H3'120.9°120.8°
C3'C4'C5'122.0°120.2°
C3'C4'N3'127.5°130.5°
C5'C4'N3'110.5°109.3°
C4'C5'C6'120.5°121.5°
C4'C5'N4'107.8°105.7°
C4'N3'C8'102.9°105.6°
C4'N3'ZN130.1°137.0°
C6'C5'N4'131.7°132.8°
C5'C6'H6'119.4°120.0°
C5'N4'C8'104.4°107.2°
C5'N4'HN4'127.8°126.5°
N1'C7'N2'114.3°118.1°
C7'N1'H1'1120.0°120.1°
C7'N1'H1'2120.0°123.6°
C7'N2'H2'1112.0°118.5°
H1'1N1'H1'2120.0°116.3°
C8'N3'ZN126.2°108.1°
N3'C8'N4'114.5°112.3°
N3'C8'C9123.5°116.9°
N3'ZNN393.3°106.8°
C8'N4'HN4'127.8°126.3°
N4'C8'C9122.0°130.9°
C8'C9O9117.6°120.3°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C2C1C6C7175.6°179.3°
C1C2C3H2180.0°179.5°
C1C2C3C40.6°0.3°
C1C2C3H3179.4°179.6°
C2C1C6C50.2°0.5°
C2C1C6H6179.8°179.9°
C2C1C7N1161.9°5.0°
C2C1C7N219.6°173.4°
C6C1C2C30.3°0.5°
C6C1C2H2179.7°180.0°
C1C6C5C40.4°0.1°
C1C6C5H6180.0°179.5°
C1C6C5N4179.4°179.6°
C6C1C7N122.7°174.3°
C6C1C7N2155.7°7.3°
C7C1C2C3175.9°179.8°
C7C1C2H24.1°0.7°
C7C1C6C5175.5°179.9°
C7C1C6H64.6°0.6°
C1C7N1N2178.6°178.4°
C1C7N1HN11178.6°175.2°
C1C7N1HN121.5°7.1°
C1C7N2HN21178.5°178.7°
C2C3C4H3180.0°179.3°
C2C3C4C50.3°1.0°
C2C3C4N3180.0°179.1°
H2C2C3C4179.4°179.2°
H2C2C3H30.6°0.1°
C3C4C5N3179.8°178.5°
C3C4C5C60.1°0.9°
C3C4C5N4179.3°179.5°
C3C4N3C8179.6°178.3°
C3C4N3ZN0.6°75.3°
H3C3C4C5179.7°179.7°
H3C3C4N30.0°1.6°
C4C5C6N4179.0°179.5°
C4C5C6H6179.6°179.4°
C5C4N3C80.1°0.1°
C4C5N4C80.5°1.5°
C4C5N4HN4179.5°179.5°
C5C4N3ZN179.1°102.9°
N3C4C5C6179.6°179.4°
N3C4C5N40.4°1.0°
C4N3C8ZN179.1°123.0°
C4N3C8N40.2°0.9°
C4N3C8C9179.3°176.9°
C4N3ZNN3'165.4°110.1°
C6C5N4C8179.6°179.0°
C6C5N4HN40.4°0.0°
N4C5C6H60.6°0.1°
C5N4C8N30.5°1.5°
C5N4C8HN4180.0°179.0°
C5N4C8C9179.6°177.3°
C7N1HN11HN12180.0°177.9°
N1C7N2HN210.0°0.3°
N2C7N1HN110.0°3.2°
N2C7N1HN12180.0°174.5°
N3C8N4C9179.1°175.8°
N3C8N4HN4179.5°179.5°
C8N3ZNN3'13.4°0.4°
N3C8C9C8'16.6°96.3°
N3C8C9O9171.1°69.2°
N4C8C9C8'162.5°88.3°
N4C8C9O99.8°106.2°
N4C8N3ZN178.9°123.9°
HN4N4C8C90.4°3.7°
C8C9C8'N3'12.5°25.3°
C8C9C8'N4'168.2°153.6°
C8C9C8'O9172.1°165.7°
C9C8N3ZN0.2°60.1°
C2'C1'C6'C7'176.2°179.9°
C1'C2'C3'H2'180.0°179.8°
C1'C2'C3'C4'0.5°0.3°
C1'C2'C3'H3'179.5°180.0°
C2'C1'C6'C5'0.6°0.1°
C2'C1'C6'H6'179.4°179.8°
C2'C1'C7'N1'150.2°1.5°
C2'C1'C7'N2'29.6°178.0°
C6'C1'C2'C3'0.0°0.1°
C6'C1'C2'H2'179.9°179.9°
C1'C6'C5'C4'0.8°0.1°
C1'C6'C5'H6'180.0°179.9°
C1'C6'C5'N4'179.7°180.0°
C6'C1'C7'N1'25.8°178.4°
C6'C1'C7'N2'154.4°2.1°
C7'C1'C2'C3'176.3°180.0°
C7'C1'C2'H2'3.7°0.2°
C7'C1'C6'C5'175.6°180.0°
C7'C1'C6'H6'4.4°0.1°
C1'C7'N1'N2'179.8°179.6°
C1'C7'N1'H1'1179.8°178.5°
C1'C7'N1'H1'20.2°2.2°
C1'C7'N2'H2'1179.8°179.6°
C2'C3'C4'H3'180.0°179.7°
C2'C3'C4'C5'0.3°0.4°
C2'C3'C4'N3'179.9°179.8°
H2'C2'C3'C4'179.5°179.9°
H2'C2'C3'H3'0.5°0.2°
C3'C4'C5'N3'179.6°179.5°
C3'C4'C5'C6'0.4°0.3°
C3'C4'C5'N4'179.9°179.8°
C3'C4'N3'C8'179.4°179.6°
C3'C4'N3'ZN9.7°39.0°
H3'C3'C4'C5'179.7°179.9°
H3'C3'C4'N3'0.1°0.5°
C4'C5'C6'N4'179.5°179.8°
C4'C5'C6'H6'179.2°179.8°
C5'C4'N3'C8'0.2°0.1°
C5'C4'N3'ZN169.9°140.5°
C4'C5'N4'C8'0.6°0.4°
C4'C5'N4'HN4'179.3°179.9°
N3'C4'C5'C6'179.3°179.8°
N3'C4'C5'N4'0.3°0.3°
C4'N3'C8'ZN170.3°152.9°
C4'N3'C8'N4'0.7°0.1°
C4'N3'C8'C9178.6°179.2°
C4'N3'ZNN3174.9°176.7°
C6'C5'N4'C8'178.9°179.8°
C6'C5'N4'HN4'1.2°0.0°
N4'C5'C6'H6'0.3°0.1°
C5'N4'C8'N3'0.8°0.3°
C5'N4'C8'HN4'180.0°179.7°
C5'N4'C8'C9178.5°179.3°
C7'N1'H1'1H1'2180.0°179.3°
N1'C7'N2'H2'10.0°0.0°
N2'C7'N1'H1'10.0°1.0°
N2'C7'N1'H1'2180.0°178.2°
N3'C8'N4'C9179.3°178.9°
N3'C8'N4'HN4'179.1°179.9°
N3'C8'C9O9175.3°140.4°
C8'N3'ZNN317.6°43.3°
ZNN3'C8'N4'170.9°153.0°
ZNN3'C8'C98.4°27.9°
N4'C8'C9O93.9°40.7°
HN4'N4'C8'C91.5°1.0°

258735

PDB entries from 2026-08-26

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