BMQ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.53Å | |
| P | O2P | sing | 1.61Å | 1.49Å | |
| P | O3P | sing | 1.61Å | 1.49Å | |
| P | O5' | sing | 1.61Å | 1.58Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.46Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.44Å | 1.54Å | |
| C4' | C3' | sing | 1.54Å | 1.50Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | C1' | sing | 1.44Å | 1.45Å | |
| C3' | O3' | sing | 1.43Å | 1.47Å | |
| C3' | C2' | sing | 1.55Å | 1.55Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.36Å | |
| C2' | C1' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C1' | N1 | sing | 1.46Å | 1.55Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.34Å | 1.41Å | |
| N1 | C6 | sing | 1.35Å | 1.29Å | |
| C2 | O2 | doub | 1.21Å | 1.32Å | |
| C2 | N3 | sing | 1.34Å | 1.38Å | |
| N3 | C4 | sing | 1.35Å | 1.37Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.21Å | 1.24Å | |
| C4 | C5 | sing | 1.52Å | 1.43Å | |
| C5 | C6 | sing | 1.52Å | 1.38Å | |
| C5 | H51 | sing | 1.09Å | 1.10Å | |
| C5 | H52 | sing | 1.09Å | 1.10Å | |
| C6 | O1 | doub | 1.21Å | 1.36Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 115.5° | 109.5° |
| O1P | P | O3P | 109.2° | 109.5° |
| O1P | P | O5' | 104.1° | 109.5° |
| O2P | P | O3P | 109.1° | 109.5° |
| O2P | P | O5' | 110.4° | 109.5° |
| P | O2P | HOP2 | 109.5° | 114.0° |
| O3P | P | O5' | 108.4° | 109.4° |
| P | O3P | HOP3 | 109.5° | 114.0° |
| P | O5' | C5' | 116.6° | 123.0° |
| O5' | C5' | C4' | 116.3° | 109.4° |
| O5' | C5' | H5'1 | 107.3° | 109.5° |
| O5' | C5' | H5'2 | 107.3° | 109.5° |
| C4' | C5' | H5'1 | 107.3° | 109.5° |
| C4' | C5' | H5'2 | 107.2° | 109.5° |
| C5' | C4' | O4' | 113.2° | 109.9° |
| C5' | C4' | C3' | 121.8° | 109.8° |
| C5' | C4' | H4' | 96.2° | 109.9° |
| H5'1 | C5' | H5'2 | 111.6° | 109.5° |
| O4' | C4' | C3' | 108.0° | 107.3° |
| O4' | C4' | H4' | 113.8° | 109.9° |
| C4' | O4' | C1' | 105.9° | 107.0° |
| C3' | C4' | H4' | 102.9° | 110.0° |
| C4' | C3' | O3' | 108.2° | 110.5° |
| C4' | C3' | C2' | 105.2° | 104.2° |
| C4' | C3' | H3' | 112.7° | 110.5° |
| O4' | C1' | C2' | 108.3° | 103.5° |
| O4' | C1' | N1 | 111.7° | 110.6° |
| O4' | C1' | H1' | 110.7° | 110.7° |
| O3' | C3' | C2' | 108.5° | 110.5° |
| O3' | C3' | H3' | 109.7° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.1° |
| C2' | C3' | H3' | 112.4° | 110.6° |
| C3' | C2' | O2' | 117.1° | 110.9° |
| C3' | C2' | C1' | 103.3° | 102.1° |
| C3' | C2' | H2' | 109.8° | 110.9° |
| O2' | C2' | C1' | 112.5° | 110.9° |
| O2' | C2' | H2' | 100.0° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C1' | C2' | H2' | 114.6° | 110.9° |
| C2' | C1' | N1 | 114.6° | 110.6° |
| C2' | C1' | H1' | 107.5° | 110.6° |
| N1 | C1' | H1' | 103.8° | 110.7° |
| C1' | N1 | C2 | 119.2° | 119.1° |
| C1' | N1 | C6 | 119.9° | 119.0° |
| C2 | N1 | C6 | 120.9° | 121.9° |
| N1 | C2 | O2 | 122.9° | 117.6° |
| N1 | C2 | N3 | 117.6° | 124.8° |
| N1 | C6 | C5 | 124.0° | 117.5° |
| N1 | C6 | O1 | 119.1° | 121.2° |
| O2 | C2 | N3 | 119.5° | 117.6° |
| C2 | N3 | C4 | 121.7° | 121.9° |
| C2 | N3 | HN3 | 119.1° | 119.0° |
| C4 | N3 | HN3 | 119.2° | 119.1° |
| N3 | C4 | O4 | 118.7° | 121.2° |
| N3 | C4 | C5 | 118.9° | 117.6° |
| O4 | C4 | C5 | 122.4° | 121.2° |
| C4 | C5 | C6 | 117.0° | 116.2° |
| C4 | C5 | H51 | 107.0° | 108.1° |
| C4 | C5 | H52 | 107.0° | 108.2° |
| C6 | C5 | H51 | 107.0° | 108.3° |
| C6 | C5 | H52 | 107.0° | 107.9° |
| C5 | C6 | O1 | 116.9° | 121.2° |
| H51 | C5 | H52 | 111.8° | 107.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 123.3° | 120.0° |
| O1P | P | O2P | O5' | 117.7° | 120.0° |
| O1P | P | O3P | O5' | 112.8° | 120.0° |
| O1P | P | O2P | HOP2 | 0.0° | 180.0° |
| O1P | P | O3P | HOP3 | 0.0° | 60.0° |
| O1P | P | O5' | C5' | 178.2° | 55.0° |
| O2P | P | O3P | O5' | 120.2° | 120.0° |
| O2P | P | O3P | HOP3 | 127.0° | 60.0° |
| O2P | P | O5' | C5' | 53.7° | 65.0° |
| O3P | P | O2P | HOP2 | 123.3° | 60.0° |
| O3P | P | O5' | C5' | 65.6° | 175.0° |
| O5' | P | O2P | HOP2 | 117.7° | 60.0° |
| O5' | P | O3P | HOP3 | 112.8° | 180.0° |
| P | O5' | C5' | C4' | 176.1° | 180.0° |
| P | O5' | C5' | H5'1 | 56.1° | 60.0° |
| P | O5' | C5' | H5'2 | 63.9° | 60.0° |
| O5' | C5' | C4' | H5'1 | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.0° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 117.2° | 120.0° |
| O5' | C5' | C4' | O4' | 85.3° | 66.5° |
| O5' | C5' | C4' | C3' | 46.1° | 175.7° |
| O5' | C5' | C4' | H4' | 155.5° | 54.5° |
| C4' | C5' | H5'1 | H5'2 | 117.2° | 120.0° |
| C5' | C4' | O4' | C3' | 137.9° | 119.4° |
| C5' | C4' | O4' | H4' | 108.5° | 121.0° |
| C5' | C4' | C3' | H4' | 105.8° | 121.1° |
| C5' | C4' | O4' | C1' | 143.2° | 145.9° |
| C5' | C4' | C3' | O3' | 124.4° | 119.9° |
| C5' | C4' | C3' | C2' | 119.8° | 121.4° |
| C5' | C4' | C3' | H3' | 3.0° | 2.6° |
| H5'1 | C5' | C4' | O4' | 154.7° | 53.5° |
| H5'1 | C5' | C4' | C3' | 73.9° | 64.3° |
| H5'1 | C5' | C4' | H4' | 35.5° | 174.5° |
| H5'2 | C5' | C4' | O4' | 34.7° | 173.5° |
| H5'2 | C5' | C4' | C3' | 166.1° | 55.7° |
| H5'2 | C5' | C4' | H4' | 84.5° | 65.4° |
| O4' | C4' | C3' | H4' | 120.7° | 119.5° |
| O4' | C4' | C3' | O3' | 102.1° | 120.7° |
| O4' | C4' | C3' | C2' | 13.7° | 2.1° |
| O4' | C4' | C3' | H3' | 136.5° | 116.8° |
| C4' | O4' | C1' | C2' | 22.9° | 40.1° |
| C4' | O4' | C1' | N1 | 150.0° | 158.6° |
| C4' | O4' | C1' | H1' | 94.8° | 78.4° |
| C3' | C4' | O4' | C1' | 5.3° | 26.6° |
| C4' | C3' | O3' | C2' | 113.6° | 114.8° |
| C4' | C3' | O3' | H3' | 123.2° | 122.6° |
| C4' | C3' | C2' | H3' | 123.0° | 118.8° |
| C4' | C3' | O3' | HO3' | 180.0° | 179.9° |
| C4' | C3' | C2' | O2' | 150.9° | 139.0° |
| C4' | C3' | C2' | C1' | 26.7° | 20.9° |
| C4' | C3' | C2' | H2' | 96.0° | 97.4° |
| H4' | C4' | O4' | C1' | 108.3° | 93.0° |
| H4' | C4' | C3' | O3' | 18.6° | 1.2° |
| H4' | C4' | C3' | C2' | 134.4° | 117.5° |
| H4' | C4' | C3' | H3' | 102.8° | 123.7° |
| O4' | C1' | C2' | C3' | 31.1° | 37.0° |
| O4' | C1' | C2' | O2' | 158.4° | 155.2° |
| O4' | C1' | C2' | N1 | 125.5° | 118.5° |
| O4' | C1' | C2' | H1' | 119.7° | 118.6° |
| O4' | C1' | C2' | H2' | 88.2° | 81.2° |
| O4' | C1' | N1 | H1' | 119.3° | 123.0° |
| O4' | C1' | N1 | C2 | 67.9° | 53.5° |
| O4' | C1' | N1 | C6 | 112.3° | 126.8° |
| O3' | C3' | C2' | H3' | 121.5° | 122.5° |
| O3' | C3' | C2' | O2' | 35.4° | 20.4° |
| O3' | C3' | C2' | C1' | 88.9° | 97.8° |
| O3' | C3' | C2' | H2' | 148.4° | 144.0° |
| C2' | C3' | O3' | HO3' | 66.4° | 65.1° |
| C3' | C2' | O2' | C1' | 119.5° | 112.7° |
| C3' | C2' | O2' | H2' | 118.4° | 123.7° |
| C3' | C2' | C1' | H2' | 119.4° | 118.2° |
| C3' | C2' | O2' | HO2' | 180.0° | 61.5° |
| C3' | C2' | C1' | N1 | 156.6° | 155.5° |
| C3' | C2' | C1' | H1' | 88.5° | 81.5° |
| H3' | C3' | O3' | HO3' | 56.8° | 57.5° |
| H3' | C3' | C2' | O2' | 86.1° | 102.2° |
| H3' | C3' | C2' | C1' | 149.6° | 139.7° |
| H3' | C3' | C2' | H2' | 27.0° | 21.4° |
| O2' | C2' | C1' | H2' | 113.4° | 123.6° |
| O2' | C2' | C1' | N1 | 76.1° | 86.3° |
| O2' | C2' | C1' | H1' | 38.7° | 36.7° |
| C1' | C2' | O2' | HO2' | 60.5° | 174.2° |
| C2' | C1' | N1 | H1' | 117.0° | 123.0° |
| C2' | C1' | N1 | C2 | 55.8° | 60.5° |
| C2' | C1' | N1 | C6 | 124.1° | 119.2° |
| H2' | C2' | O2' | HO2' | 61.6° | 62.2° |
| H2' | C2' | C1' | N1 | 37.3° | 37.3° |
| H2' | C2' | C1' | H1' | 152.1° | 160.3° |
| C1' | N1 | C2 | C6 | 179.8° | 179.7° |
| C1' | N1 | C2 | O2 | 0.3° | 0.0° |
| C1' | N1 | C2 | N3 | 179.7° | 180.0° |
| C1' | N1 | C6 | C5 | 179.7° | 179.8° |
| C1' | N1 | C6 | O1 | 0.4° | 0.1° |
| H1' | C1' | N1 | C2 | 172.8° | 176.5° |
| H1' | C1' | N1 | C6 | 7.1° | 3.8° |
| N1 | C2 | O2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| N1 | C2 | N3 | HN3 | 179.9° | 180.0° |
| C2 | N1 | C6 | C5 | 0.2° | 0.5° |
| C2 | N1 | C6 | O1 | 179.8° | 179.8° |
| C6 | N1 | C2 | O2 | 179.9° | 179.7° |
| C6 | N1 | C2 | N3 | 0.1° | 0.3° |
| N1 | C6 | C5 | C4 | 0.0° | 0.5° |
| N1 | C6 | C5 | O1 | 180.0° | 179.7° |
| N1 | C6 | C5 | H51 | 120.0° | 121.4° |
| N1 | C6 | C5 | H52 | 120.0° | 122.1° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.2° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 179.7° | 179.9° |
| C2 | N3 | C4 | C5 | 0.3° | 0.0° |
| N3 | C4 | O4 | C5 | 180.0° | 179.9° |
| N3 | C4 | C5 | C6 | 0.3° | 0.2° |
| N3 | C4 | C5 | H51 | 119.7° | 121.7° |
| N3 | C4 | C5 | H52 | 120.3° | 121.8° |
| HN3 | N3 | C4 | O4 | 0.3° | 0.1° |
| HN3 | N3 | C4 | C5 | 179.7° | 180.0° |
| O4 | C4 | C5 | C6 | 179.8° | 179.7° |
| O4 | C4 | C5 | H51 | 60.2° | 58.3° |
| O4 | C4 | C5 | H52 | 59.8° | 58.2° |
| C4 | C5 | C6 | H51 | 120.0° | 121.9° |
| C4 | C5 | C6 | H52 | 120.0° | 121.6° |
| C4 | C5 | H51 | H52 | 116.9° | 116.7° |
| C4 | C5 | C6 | O1 | 180.0° | 179.8° |
| C6 | C5 | H51 | H52 | 116.9° | 116.6° |
| H51 | C5 | C6 | O1 | 60.0° | 58.3° |
| H52 | C5 | C6 | O1 | 60.0° | 58.2° |
