BMN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	doub	1.36Å	1.40Å	Aromatic
C1	C6	sing	1.40Å	1.43Å	Aromatic
C1	C1'	sing	1.51Å	1.52Å
P	O5'	sing	1.61Å	1.56Å
C2	C3	sing	1.41Å	1.44Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
C3	C4	doub	1.42Å	1.38Å	Aromatic
C3	C23	sing	1.40Å	1.43Å	Aromatic
C4	C5	sing	1.40Å	1.44Å	Aromatic
C4	C20	sing	1.41Å	1.43Å	Aromatic
C5	C6	doub	1.37Å	1.40Å	Aromatic
C5	H5	sing	1.08Å	1.08Å
C6	O37	sing	1.36Å	1.41Å
C1'	C2'	sing	1.55Å	1.48Å
C1'	O4'	sing	1.44Å	1.44Å
C1'	H1'	sing	1.09Å	1.10Å
C2'	C3'	sing	1.55Å	1.43Å
C2'	H2'	sing	1.09Å	1.10Å
C2'	H2'A	sing	1.09Å	1.10Å
C20	C21	doub	1.36Å	1.40Å	Aromatic
C20	H20	sing	1.08Å	1.08Å
O3'	C3'	sing	1.43Å	1.38Å
O3'	HO3'	sing	0.97Å	0.95Å
C21	C22	sing	1.39Å	1.40Å	Aromatic
C21	H21	sing	1.08Å	1.08Å
C22	C23	doub	1.36Å	1.41Å	Aromatic
C22	H22	sing	1.08Å	1.08Å
C23	H23	sing	1.08Å	1.08Å
C3'	C4'	sing	1.54Å	1.49Å
C3'	H3'	sing	1.09Å	1.10Å
O37	C38	sing	1.43Å	1.41Å
C38	H38	sing	1.09Å	1.10Å
C38	H38A	sing	1.09Å	1.10Å
C38	H38B	sing	1.09Å	1.10Å
C4'	O4'	sing	1.44Å	1.40Å
C4'	C5'	sing	1.53Å	1.49Å
C4'	H4'	sing	1.09Å	1.10Å
C5'	O5'	sing	1.43Å	1.39Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5'A	sing	1.09Å	1.10Å
P	OP1	doub	1.48Å	1.54Å
P	OP3	sing	1.61Å	1.56Å
P	OP2	sing	1.61Å	1.72Å
OP3	HOP3	sing	0.97Å	0.95Å
OP2	HOP2	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	C6	120.4°	120.9°
C2	C1	C1'	118.3°	119.5°
C1	C2	C3	119.9°	119.7°
C1	C2	H2	120.1°	120.1°
C6	C1	C1'	121.3°	119.5°
C1	C6	C5	119.6°	120.9°
C1	C6	O37	120.6°	119.5°
C1	C1'	C2'	110.6°	110.6°
C1	C1'	O4'	112.7°	110.6°
C1	C1'	H1'	105.5°	110.6°
P	O5'	C5'	124.3°	123.0°
O5'	P	OP1	109.5°	109.5°
O5'	P	OP3	109.5°	109.4°
O5'	P	OP2	109.5°	109.5°
C3	C2	H2	120.1°	120.2°
C2	C3	C4	119.8°	119.4°
C2	C3	C23	120.1°	121.2°
C4	C3	C23	120.1°	119.4°
C3	C4	C5	120.3°	119.4°
C3	C4	C20	119.9°	119.4°
C3	C23	C22	119.9°	119.7°
C3	C23	H23	120.1°	120.2°
C5	C4	C20	119.8°	121.2°
C4	C5	C6	120.1°	119.6°
C4	C5	H5	120.0°	120.2°
C4	C20	C21	119.8°	119.6°
C4	C20	H20	120.1°	120.2°
C6	C5	H5	120.0°	120.2°
C5	C6	O37	119.9°	119.6°
C6	O37	C38	120.0°	116.9°
C2'	C1'	O4'	106.4°	103.5°
C2'	C1'	H1'	111.9°	110.6°
C1'	C2'	C3'	106.1°	102.1°
C1'	C2'	H2'	110.6°	110.9°
C1'	C2'	H2'A	110.6°	110.9°
O4'	C1'	H1'	109.8°	110.7°
C1'	O4'	C4'	108.2°	107.0°
C3'	C2'	H2'	110.6°	110.9°
C3'	C2'	H2'A	110.6°	110.9°
C2'	C3'	O3'	108.8°	110.5°
C2'	C3'	C4'	103.9°	104.2°
C2'	C3'	H3'	113.5°	110.5°
H2'	C2'	H2'A	108.3°	110.8°
C21	C20	H20	120.1°	120.1°
C20	C21	C22	120.5°	121.0°
C20	C21	H21	119.7°	119.5°
C3'	O3'	HO3'	109.5°	114.0°
O3'	C3'	C4'	109.5°	110.5°
O3'	C3'	H3'	108.3°	110.4°
C22	C21	H21	119.7°	119.5°
C21	C22	C23	119.7°	121.0°
C21	C22	H22	120.1°	119.5°
C23	C22	H22	120.1°	119.5°
C22	C23	H23	120.1°	120.1°
C4'	C3'	H3'	112.8°	110.6°
C3'	C4'	O4'	108.0°	107.3°
C3'	C4'	C5'	112.3°	109.9°
C3'	C4'	H4'	108.9°	109.9°
O37	C38	H38	109.5°	109.4°
O37	C38	H38A	109.4°	109.5°
O37	C38	H38B	109.4°	109.5°
H38	C38	H38A	109.5°	109.5°
H38	C38	H38B	109.5°	109.4°
H38A	C38	H38B	109.5°	109.4°
O4'	C4'	C5'	110.3°	109.9°
O4'	C4'	H4'	110.9°	109.9°
C5'	C4'	H4'	106.5°	110.0°
C4'	C5'	O5'	112.4°	109.5°
C4'	C5'	H5'	108.5°	109.4°
C4'	C5'	H5'A	108.5°	109.5°
O5'	C5'	H5'	108.5°	109.4°
O5'	C5'	H5'A	108.5°	109.5°
H5'	C5'	H5'A	110.5°	109.5°
OP1	P	OP3	109.5°	109.4°
OP1	P	OP2	109.5°	109.5°
OP3	P	OP2	109.5°	109.5°
P	OP3	HOP3	109.5°	114.0°
P	OP2	HOP2	109.5°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	C6	C1'	179.6°	179.7°
C1	C2	C3	H2	180.0°	180.0°
C1	C2	C3	C4	0.1°	0.0°
C1	C2	C3	C23	179.9°	180.0°
C2	C1	C6	C5	0.2°	0.0°
C2	C1	C6	O37	179.9°	180.0°
C2	C1	C1'	C2'	103.8°	95.0°
C2	C1	C1'	O4'	15.1°	19.1°
C2	C1	C1'	H1'	134.9°	142.1°
C6	C1	C2	C3	0.2°	0.0°
C6	C1	C2	H2	179.8°	179.9°
C1	C6	C5	C4	0.0°	0.0°
C1	C6	C5	O37	179.9°	180.0°
C1	C6	C5	H5	180.0°	180.0°
C6	C1	C1'	C2'	75.8°	84.7°
C6	C1	C1'	O4'	165.3°	161.2°
C6	C1	C1'	H1'	45.5°	38.1°
C1	C6	O37	C38	152.6°	180.0°
C1'	C1	C2	C3	179.9°	179.7°
C1'	C1	C2	H2	0.1°	0.3°
C1'	C1	C6	C5	179.8°	179.7°
C1'	C1	C6	O37	0.3°	0.2°
C1	C1'	C2'	O4'	122.7°	118.5°
C1	C1'	C2'	H1'	117.4°	122.9°
C1	C1'	O4'	H1'	117.3°	122.9°
C1	C1'	C2'	C3'	101.8°	155.5°
C1	C1'	C2'	H2'	138.3°	86.3°
C1	C1'	C2'	H2'A	18.2°	37.3°
C1	C1'	O4'	C4'	115.9°	158.5°
P	O5'	C5'	C4'	168.0°	180.0°
P	O5'	C5'	H5'	48.0°	60.0°
P	O5'	C5'	H5'A	72.1°	60.0°
O5'	P	OP1	OP3	120.0°	119.9°
O5'	P	OP1	OP2	120.0°	120.0°
O5'	P	OP3	OP2	120.0°	120.0°
O5'	P	OP3	HOP3	120.0°	60.0°
O5'	P	OP2	HOP2	120.0°	180.0°
C2	C3	C4	C23	180.0°	180.0°
C2	C3	C4	C5	0.0°	0.0°
C2	C3	C4	C20	180.0°	180.0°
C2	C3	C23	C22	180.0°	180.0°
C2	C3	C23	H23	0.0°	0.0°
H2	C2	C3	C4	179.9°	180.0°
H2	C2	C3	C23	0.1°	0.0°
C3	C4	C5	C20	180.0°	180.0°
C3	C4	C5	C6	0.1°	0.0°
C3	C4	C5	H5	179.9°	180.0°
C3	C4	C20	C21	0.0°	0.0°
C3	C4	C20	H20	180.0°	179.9°
C4	C3	C23	C22	0.0°	0.1°
C4	C3	C23	H23	180.0°	180.0°
C23	C3	C4	C5	179.9°	180.0°
C23	C3	C4	C20	0.0°	0.0°
C3	C23	C22	C21	0.0°	0.1°
C3	C23	C22	H23	180.0°	179.9°
C3	C23	C22	H22	180.0°	180.0°
C4	C5	C6	H5	180.0°	180.0°
C4	C5	C6	O37	179.9°	180.0°
C5	C4	C20	C21	180.0°	180.0°
C5	C4	C20	H20	0.0°	0.1°
C20	C4	C5	C6	179.9°	180.0°
C20	C4	C5	H5	0.0°	0.0°
C4	C20	C21	H20	180.0°	179.9°
C4	C20	C21	C22	0.0°	0.0°
C4	C20	C21	H21	180.0°	180.0°
C5	C6	O37	C38	27.5°	0.0°
H5	C5	C6	O37	0.0°	0.0°
C6	O37	C38	H38	180.0°	180.0°
C6	O37	C38	H38A	60.0°	60.0°
C6	O37	C38	H38B	60.0°	60.0°
C2'	C1'	O4'	H1'	121.3°	118.6°
C1'	C2'	C3'	H2'	120.0°	118.2°
C1'	C2'	C3'	H2'A	120.0°	118.2°
C1'	C2'	H2'	H2'A	121.4°	123.6°
C1'	C2'	C3'	O3'	143.6°	97.8°
C1'	C2'	C3'	C4'	27.1°	20.9°
C1'	C2'	C3'	H3'	95.8°	139.7°
C2'	C1'	O4'	C4'	5.5°	40.0°
O4'	C1'	C2'	C3'	20.9°	37.0°
O4'	C1'	C2'	H2'	99.0°	155.2°
O4'	C1'	C2'	H2'A	140.9°	81.2°
C1'	O4'	C4'	C3'	11.5°	26.5°
C1'	O4'	C4'	C5'	134.6°	145.9°
C1'	O4'	C4'	H4'	107.7°	92.9°
H1'	C1'	C2'	C3'	140.9°	81.6°
H1'	C1'	C2'	H2'	20.9°	36.6°
H1'	C1'	C2'	H2'A	99.1°	160.2°
H1'	C1'	O4'	C4'	126.8°	78.5°
C3'	C2'	H2'	H2'A	121.3°	123.7°
C2'	C3'	O3'	C4'	112.9°	114.8°
C2'	C3'	O3'	H3'	123.7°	122.5°
C2'	C3'	O3'	HO3'	180.0°	61.5°
C2'	C3'	C4'	H3'	123.3°	118.8°
C2'	C3'	C4'	O4'	24.4°	2.0°
C2'	C3'	C4'	C5'	146.2°	121.4°
C2'	C3'	C4'	H4'	96.1°	117.4°
H2'	C2'	C3'	O3'	23.6°	20.4°
H2'	C2'	C3'	C4'	92.9°	139.1°
H2'	C2'	C3'	H3'	144.2°	102.1°
H2'A	C2'	C3'	O3'	96.3°	144.0°
H2'A	C2'	C3'	C4'	147.1°	97.3°
H2'A	C2'	C3'	H3'	24.2°	21.5°
C20	C21	C22	H21	180.0°	179.9°
C20	C21	C22	C23	0.0°	0.1°
C20	C21	C22	H22	180.0°	180.0°
H20	C20	C21	C22	180.0°	179.9°
H20	C20	C21	H21	0.0°	0.0°
O3'	C3'	C4'	H3'	120.6°	122.6°
O3'	C3'	C4'	O4'	140.4°	120.7°
O3'	C3'	C4'	C5'	97.7°	119.9°
O3'	C3'	C4'	H4'	19.9°	1.3°
HO3'	O3'	C3'	C4'	67.0°	176.3°
HO3'	O3'	C3'	H3'	56.3°	61.1°
C21	C22	C23	H22	180.0°	180.0°
C21	C22	C23	H23	180.0°	180.0°
H21	C21	C22	C23	180.0°	180.0°
H21	C21	C22	H22	0.0°	0.0°
H22	C22	C23	H23	0.0°	0.0°
C3'	C4'	O4'	C5'	123.1°	119.4°
C3'	C4'	O4'	H4'	119.2°	119.4°
C3'	C4'	C5'	H4'	119.1°	121.1°
C3'	C4'	C5'	O5'	177.2°	175.0°
C3'	C4'	C5'	H5'	62.8°	55.1°
C3'	C4'	C5'	H5'A	57.2°	64.9°
H3'	C3'	C4'	O4'	98.9°	116.7°
H3'	C3'	C4'	C5'	22.9°	2.7°
H3'	C3'	C4'	H4'	140.6°	123.9°
O37	C38	H38	H38A	120.0°	120.0°
O37	C38	H38	H38B	120.0°	120.0°
O37	C38	H38A	H38B	120.0°	120.0°
H38	C38	H38A	H38B	120.0°	120.0°
O4'	C4'	C5'	H4'	120.4°	121.1°
O4'	C4'	C5'	O5'	56.7°	67.2°
O4'	C4'	C5'	H5'	176.6°	172.9°
O4'	C4'	C5'	H5'A	63.3°	52.9°
C4'	C5'	O5'	H5'	120.0°	120.0°
C4'	C5'	O5'	H5'A	120.0°	120.1°
C4'	C5'	H5'	H5'A	118.8°	120.0°
H4'	C4'	C5'	O5'	63.7°	53.9°
H4'	C4'	C5'	H5'	56.3°	66.1°
H4'	C4'	C5'	H5'A	176.3°	173.9°
O5'	C5'	H5'	H5'A	118.8°	120.0°
C5'	O5'	P	OP1	76.3°	55.0°
C5'	O5'	P	OP3	43.6°	65.0°
C5'	O5'	P	OP2	163.6°	175.0°
OP1	P	OP3	OP2	120.0°	120.1°
OP1	P	OP3	HOP3	0.0°	180.0°
OP1	P	OP2	HOP2	0.0°	60.0°
OP3	P	OP2	HOP2	120.0°	60.0°
OP2	P	OP3	HOP3	120.0°	60.0°

Definition date:	2011-07-29
Last modified:	2012-06-01
Release status:	REL
Processing site:	RCSB
Derived from:	3SV3