English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

BIK

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O6	C6	sing	1.36Å	1.33Å
O6	HO6	sing	0.97Å	0.95Å
C6	C7	doub	1.40Å	1.40Å	Aromatic
C6	C5	sing	1.36Å	1.42Å	Aromatic
C7	C8	sing	1.36Å	1.40Å	Aromatic
C7	H7	sing	1.08Å	1.10Å
C8	C8A	doub	1.41Å	1.40Å	Aromatic
C8	H8	sing	1.08Å	1.10Å
C8A	C4A	sing	1.42Å	1.40Å	Aromatic
C8A	C1	sing	1.40Å	1.41Å	Aromatic
C4A	C5	doub	1.41Å	1.42Å	Aromatic
C4A	C4	sing	1.40Å	1.41Å	Aromatic
C5	H5	sing	1.08Å	1.10Å
C4	C3	doub	1.39Å	1.42Å	Aromatic
C4	H4	sing	1.08Å	1.10Å
C1	C2	doub	1.36Å	1.41Å	Aromatic
C1	H1	sing	1.08Å	1.10Å
C2	O2	sing	1.36Å	1.29Å
C2	C3	sing	1.41Å	1.41Å	Aromatic
O2	HO2	sing	0.97Å	0.95Å
C3	C31	sing	1.47Å	1.52Å
C31	O32	sing	1.21Å	1.27Å
C31	O31	doub	1.35Å	1.24Å
O32	H32	sing	3.88Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C6	O6	HO6	119.9°	106.8°
O6	C6	C7	119.8°	119.5°
O6	C6	C5	124.5°	119.6°
C7	C6	C5	115.6°	120.9°
C6	C7	C8	122.7°	121.0°
C6	C7	H7	118.5°	119.5°
C6	C5	C4A	122.1°	119.6°
C6	C5	H5	118.7°	120.1°
C8	C7	H7	118.8°	119.5°
C7	C8	C8A	121.2°	119.8°
C7	C8	H8	119.6°	120.1°
C8A	C8	H8	119.2°	120.1°
C8	C8A	C4A	118.0°	119.3°
C8	C8A	C1	120.3°	120.9°
C4A	C8A	C1	121.6°	119.8°
C8A	C4A	C5	120.3°	119.4°
C8A	C4A	C4	117.0°	119.6°
C8A	C1	C2	121.6°	120.0°
C8A	C1	H1	119.4°	120.0°
C5	C4A	C4	122.7°	121.0°
C4A	C5	H5	119.2°	120.2°
C4A	C4	C3	121.9°	119.5°
C4A	C4	H4	118.7°	120.2°
C3	C4	H4	119.4°	120.3°
C4	C3	C2	120.3°	120.4°
C4	C3	C31	120.0°	119.8°
C2	C1	H1	119.0°	120.0°
C1	C2	O2	119.9°	119.7°
C1	C2	C3	117.5°	120.7°
O2	C2	C3	122.5°	119.7°
C2	O2	HO2	119.9°	106.9°
C2	C3	C31	119.7°	119.8°
C3	C31	O32	121.4°	120.0°
C3	C31	O31	117.9°	120.0°
O32	C31	O31	120.7°	120.0°
C31	O32	H32	121.4°	37.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O6	C6	C7	C5	179.6°	179.9°
O6	C6	C7	C8	179.7°	179.9°
O6	C6	C7	H7	0.3°	0.1°
O6	C6	C5	C4A	179.8°	179.9°
O6	C6	C5	H5	0.2°	0.1°
HO6	O6	C6	C7	179.9°	89.9°
HO6	O6	C6	C5	0.5°	90.0°
C6	C7	C8	H7	179.9°	179.9°
C6	C7	C8	C8A	0.1°	0.0°
C6	C7	C8	H8	180.0°	180.0°
C7	C6	C5	C4A	0.2°	0.1°
C7	C6	C5	H5	179.8°	180.0°
C5	C6	C7	C8	0.1°	0.0°
C5	C6	C7	H7	179.9°	180.0°
C6	C5	C4A	C8A	0.1°	0.0°
C6	C5	C4A	H5	180.0°	179.9°
C6	C5	C4A	C4	179.9°	180.0°
C7	C8	C8A	H8	179.9°	180.0°
C7	C8	C8A	C4A	0.3°	0.0°
C7	C8	C8A	C1	179.0°	180.0°
H7	C7	C8	C8A	179.8°	179.9°
H7	C7	C8	H8	0.1°	0.0°
C8	C8A	C4A	C1	178.7°	179.9°
C8	C8A	C4A	C5	0.2°	0.0°
C8	C8A	C4A	C4	179.7°	180.0°
C8	C8A	C1	C2	179.9°	179.7°
C8	C8A	C1	H1	0.1°	0.1°
H8	C8	C8A	C4A	179.8°	180.0°
H8	C8	C8A	C1	1.1°	0.1°
C8A	C4A	C5	C4	179.9°	180.0°
C8A	C4A	C5	H5	180.0°	179.9°
C8A	C4A	C4	C3	0.6°	0.0°
C8A	C4A	C4	H4	179.4°	179.9°
C4A	C8A	C1	C2	1.5°	0.2°
C4A	C8A	C1	H1	178.6°	180.0°
C1	C8A	C4A	C5	178.8°	180.0°
C1	C8A	C4A	C4	1.0°	0.0°
C8A	C1	C2	H1	180.0°	179.8°
C8A	C1	C2	O2	177.4°	180.0°
C8A	C1	C2	C3	0.2°	0.5°
C5	C4A	C4	C3	179.5°	180.0°
C5	C4A	C4	H4	0.5°	0.1°
C4	C4A	C5	H5	0.1°	0.1°
C4A	C4	C3	H4	180.0°	179.9°
C4A	C4	C3	C2	1.9°	0.3°
C4A	C4	C3	C31	179.3°	180.0°
C4	C3	C2	C1	1.4°	0.5°
C4	C3	C2	O2	178.9°	180.0°
C4	C3	C2	C31	178.8°	179.7°
C4	C3	C31	O32	1.2°	180.0°
C4	C3	C31	O31	179.6°	0.0°
H4	C4	C3	C2	178.1°	179.8°
H4	C4	C3	C31	0.7°	0.1°
C1	C2	O2	C3	177.4°	179.5°
C1	C2	O2	HO2	179.9°	90.0°
C1	C2	C3	C31	179.8°	179.7°
H1	C1	C2	O2	2.6°	0.2°
H1	C1	C2	C3	179.9°	179.7°
O2	C2	C3	C31	2.3°	0.2°
C3	C2	O2	HO2	2.5°	90.5°
C2	C3	C31	O32	180.0°	0.3°
C2	C3	C31	O31	0.8°	179.8°
C3	C31	O32	O31	179.2°	180.0°
C3	C31	O32	H32	180.0°	0.2°
O31	C31	O32	H32	0.8°	179.8°

223790

PDB entries from 2024-08-14

PDB statistics

PDBj update info

Contact PDBj

numon