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BGM

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
POP1doub1.48Å1.48Å
POP2sing1.61Å1.47Å
PO5'sing1.61Å1.58Å
POP3sing1.61Å61.28Å
OP2HOP2sing0.97Å0.95Å
O5'C5'sing1.43Å1.44Å
C5'C4'sing1.53Å1.51Å
C5'H5'sing1.09Å1.10Å
C5'H5''sing1.09Å1.10Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.55Å1.53Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.44Å
C1'N9sing1.47Å1.45Å
C1'C2'sing1.54Å1.51Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.37Å1.38ÅAromatic
N9C4sing1.37Å1.37ÅAromatic
C8N7doub1.30Å1.30ÅAromatic
C8BRsing1.89Å57.00Å
N7C5sing1.36Å1.39ÅAromatic
C5C4doub1.40Å1.37ÅAromatic
C5C6sing1.41Å1.41Å
C4N3sing1.34Å1.35Å
N3C2doub1.31Å1.32Å
C2N2sing1.37Å1.33Å
C2N1sing1.36Å1.37Å
N2H21sing0.97Å1.00Å
N2H22sing0.97Å1.00Å
N1C6sing1.35Å1.39Å
N1H1sing0.97Å1.00Å
C6O6doub1.22Å1.26Å
C2'C3'sing1.55Å1.54Å
C2'H2'sing1.09Å1.10Å
C2'H2''sing1.09Å1.10Å
C3'O3'sing1.43Å1.43Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
OP3HOP3sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OP1POP2117.5°109.5°
OP1PO5'107.1°109.4°
OP1POP3126.9°109.5°
OP2PO5'111.9°109.5°
OP2POP353.9°109.5°
POP2HOP2109.5°114.0°
O5'POP358.5°109.5°
PO5'C5'118.3°123.0°
POP3HOP390.0°114.0°
O5'C5'C4'105.4°109.4°
O5'C5'H5'110.5°109.5°
O5'C5'H5''110.5°109.5°
C4'C5'H5'110.5°109.4°
C4'C5'H5''110.5°109.5°
C5'C4'O4'109.2°110.6°
C5'C4'C3'117.6°110.6°
C5'C4'H4'107.8°110.6°
H5'C5'H5''109.5°109.5°
O4'C4'C3'105.7°103.5°
O4'C4'H4'108.7°110.7°
C4'O4'C1'110.1°107.0°
C3'C4'H4'107.6°110.7°
C4'C3'C2'103.2°102.1°
C4'C3'O3'109.2°110.9°
C4'C3'H3'109.8°110.9°
O4'C1'N9106.0°109.9°
O4'C1'C2'104.5°107.3°
O4'C1'H1'110.4°109.9°
N9C1'C2'116.0°109.9°
N9C1'H1'110.2°109.9°
C1'N9C8131.2°126.2°
C1'N9C4124.0°126.3°
C2'C1'H1'109.4°110.0°
C1'C2'C3'100.6°104.2°
C1'C2'H2'111.6°110.5°
C1'C2'H2''111.6°110.5°
C8N9C4104.8°107.5°
N9C8N7114.8°109.8°
N9C8BR92.4°125.1°
N9C4C5106.2°106.1°
N9C4N3125.8°134.2°
N7C8BR75.7°125.1°
C8N7C5102.7°109.3°
N7C5C4111.5°107.3°
N7C5C6130.0°134.1°
C4C5C6118.5°118.6°
C5C4N3128.0°119.7°
C5C6N1113.3°118.3°
C5C6O6127.5°120.9°
C4N3C2112.5°121.1°
N3C2N2118.4°119.0°
N3C2N1124.4°121.9°
N2C2N1117.2°119.1°
C2N2H21120.0°120.0°
C2N2H22120.0°120.0°
C2N1C6123.3°120.3°
C2N1H1118.3°119.8°
H21N2H22120.0°120.0°
C6N1H1118.3°119.9°
N1C6O6119.3°120.8°
C3'C2'H2'111.6°110.5°
C3'C2'H2''111.7°110.5°
C2'C3'O3'113.6°110.9°
C2'C3'H3'109.6°110.9°
H2'C2'H2''109.5°110.5°
O3'C3'H3'111.1°110.8°
C3'O3'HO3'109.5°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OP1POP2O5'124.6°119.9°
OP1POP2OP3117.3°120.0°
OP1PO5'OP3123.3°120.0°
OP1POP2HOP20.0°179.9°
OP1PO5'C5'167.2°55.0°
OP1POP3HOP390.0°60.1°
OP2PO5'OP36.9°120.1°
OP2PO5'C5'62.6°64.9°
OP2POP3HOP390.0°60.0°
O5'POP2HOP2124.6°60.0°
PO5'C5'C4'179.3°180.0°
PO5'C5'H5'61.4°60.0°
PO5'C5'H5''59.9°60.1°
O5'POP3HOP390.0°180.0°
OP3POP2HOP2117.3°60.0°
OP3PO5'C5'69.5°175.0°
O5'C5'C4'H5'119.3°120.0°
O5'C5'C4'H5''119.4°120.0°
O5'C5'H5'H5''121.9°120.1°
O5'C5'C4'O4'159.8°66.5°
O5'C5'C4'C3'79.8°179.5°
O5'C5'C4'H4'41.9°56.5°
C4'C5'H5'H5''121.9°120.0°
C5'C4'O4'C3'127.4°118.5°
C5'C4'O4'H4'117.3°122.9°
C5'C4'C3'H4'121.8°122.9°
C5'C4'O4'C1'129.5°158.5°
C5'C4'C3'C2'99.9°155.5°
C5'C4'C3'O3'139.0°86.3°
C5'C4'C3'H3'16.9°37.3°
H5'C5'C4'O4'40.5°53.5°
H5'C5'C4'C3'160.8°60.5°
H5'C5'C4'H4'77.5°176.5°
H5''C5'C4'O4'80.8°173.5°
H5''C5'C4'C3'39.6°59.5°
H5''C5'C4'H4'161.3°63.5°
O4'C4'C3'H4'116.0°118.6°
C4'O4'C1'N9149.2°145.9°
C4'O4'C1'C2'26.1°26.5°
C4'O4'C1'H1'91.4°93.0°
O4'C4'C3'C2'22.2°37.0°
O4'C4'C3'O3'98.8°155.3°
O4'C4'C3'H3'139.1°81.2°
C3'C4'O4'C1'2.1°40.1°
C4'C3'C2'C1'36.6°20.9°
C4'C3'C2'O3'118.1°118.2°
C4'C3'C2'H3'116.9°118.2°
C4'C3'C2'H2'155.2°97.8°
C4'C3'C2'H2''81.9°139.6°
C4'C3'O3'H3'121.3°123.6°
C4'C3'O3'HO3'180.0°180.0°
H4'C4'O4'C1'113.2°78.5°
H4'C4'C3'C2'138.3°81.6°
H4'C4'C3'O3'17.2°36.7°
H4'C4'C3'H3'104.9°160.2°
O4'C1'N9C2'115.5°117.8°
O4'C1'N9H1'119.5°121.1°
O4'C1'C2'H1'118.3°119.5°
O4'C1'N9C860.6°43.5°
O4'C1'N9C4116.1°136.7°
O4'C1'C2'C3'38.4°2.0°
O4'C1'C2'H2'157.0°120.7°
O4'C1'C2'H2''80.1°116.7°
N9C1'C2'H1'125.4°121.0°
C1'N9C8C4177.2°179.8°
C1'N9C8N7177.4°180.0°
C1'N9C8BR107.3°0.0°
C1'N9C4C5177.7°179.9°
C1'N9C4N31.7°0.1°
N9C1'C2'C3'154.8°121.5°
N9C1'C2'H2'86.7°119.9°
N9C1'C2'H2''36.2°2.8°
C2'C1'N9C854.9°74.3°
C2'C1'N9C4128.3°105.5°
C1'C2'C3'H2'118.5°118.7°
C1'C2'C3'H2''118.6°118.7°
C1'C2'H2'H2''124.1°122.6°
C1'C2'C3'O3'81.5°139.1°
C1'C2'C3'H3'153.6°97.3°
H1'C1'N9C8179.9°164.6°
H1'C1'N9C43.4°15.6°
H1'C1'C2'C3'79.8°117.5°
H1'C1'C2'H2'38.7°1.2°
H1'C1'C2'H2''161.6°123.8°
N9C8N7BR86.0°180.0°
N9C8N7C50.0°0.0°
C8N9C4C50.3°0.3°
C8N9C4N3179.2°179.7°
C4N9C8N70.2°0.2°
C4N9C8BR75.5°179.8°
N9C4C5N70.3°0.3°
N9C4C5N3179.4°179.9°
N9C4C5C6179.5°179.8°
N9C4N3C2179.8°180.0°
C8N7C5C40.2°0.2°
C8N7C5C6179.3°180.0°
BRC8N7C586.0°180.0°
N7C5C4C6179.2°179.8°
N7C5C4N3179.1°179.7°
N7C5C6N1179.3°179.3°
N7C5C6O60.9°0.0°
C5C4N3C20.5°0.1°
C4C5C6N10.3°0.5°
C4C5C6O6180.0°179.8°
C6C5C4N30.1°0.1°
C5C6N1C20.3°0.6°
C5C6N1O6179.8°179.3°
C5C6N1H1179.7°179.8°
C4N3C2N2178.9°180.0°
C4N3C2N10.5°0.0°
N3C2N2N1178.6°179.9°
N3C2N2H210.0°0.1°
N3C2N2H22180.0°180.0°
N3C2N1C60.1°0.3°
N3C2N1H1179.9°180.0°
C2N2H21H22180.0°179.9°
N2C2N1C6178.6°179.6°
N2C2N1H11.4°0.0°
N1C2N2H21178.5°179.9°
N1C2N2H221.5°0.1°
C2N1C6H1180.0°179.6°
C2N1C6O6180.0°179.9°
H1N1C6O60.0°0.5°
C3'C2'H2'H2''124.1°122.6°
C2'C3'O3'H3'124.2°123.6°
C2'C3'O3'HO3'65.5°67.3°
H2'C2'C3'O3'37.1°20.4°
H2'C2'C3'H3'87.9°144.0°
H2''C2'C3'O3'160.0°102.2°
H2''C2'C3'H3'35.0°21.4°
H3'C3'O3'HO3'58.7°56.4°

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PDB entries from 2026-02-04

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