BGL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	O1	sing	1.43Å	1.36Å
C1	C2	sing	1.53Å	1.53Å
C1	O5	sing	1.43Å	1.44Å
C1	H1	sing	1.09Å	1.11Å
O1	HO1	sing	0.97Å	0.95Å
C2	O2	sing	1.43Å	1.42Å
C2	C3	sing	1.53Å	1.55Å
C2	H2	sing	1.09Å	1.11Å
O2	C1'	sing	1.43Å	1.44Å
C3	O3	sing	1.43Å	1.39Å
C3	C4	sing	1.53Å	1.55Å
C3	H3	sing	1.09Å	1.11Å
O3	HO3	sing	0.97Å	0.95Å
C4	O4	sing	1.43Å	1.38Å
C4	C5	sing	1.53Å	1.60Å
C4	H4	sing	1.09Å	1.12Å
O4	HO4	sing	0.97Å	0.95Å
C5	O5	sing	1.43Å	1.45Å
C5	C6	sing	1.53Å	1.57Å
C5	H5	sing	1.09Å	1.11Å
C6	O6	sing	1.43Å	1.42Å
C6	H61	sing	1.09Å	1.12Å
C6	H62	sing	1.09Å	1.11Å
O6	HO6	sing	0.97Å	0.95Å
C1'	C2'	sing	1.53Å	1.47Å
C1'	H1'1	sing	1.09Å	1.12Å
C1'	H1'2	sing	1.09Å	1.12Å
C2'	C3'	sing	1.53Å	1.53Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C3'	C4'	sing	1.53Å	1.52Å
C3'	H3'1	sing	1.09Å	1.12Å
C3'	H3'2	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.50Å
C4'	H4'1	sing	1.09Å	1.11Å
C4'	H4'2	sing	1.09Å	1.12Å
C5'	C6'	sing	1.53Å	1.51Å
C5'	H5'1	sing	1.09Å	1.11Å
C5'	H5'2	sing	1.09Å	1.11Å
C6'	C7'	sing	1.53Å	1.51Å
C6'	H6'1	sing	1.09Å	1.11Å
C6'	H6'2	sing	1.09Å	1.12Å
C7'	C8'	sing	1.53Å	1.46Å
C7'	H7'1	sing	1.09Å	1.12Å
C7'	H7'2	sing	1.09Å	1.12Å
C8'	H8'1	sing	1.09Å	1.12Å
C8'	H8'2	sing	1.09Å	1.12Å
C8'	H8'3	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	112.4°	109.4°
O1	C1	O5	106.2°	109.3°
O1	C1	H1	110.2°	109.5°
C1	O1	HO1	112.4°	106.8°
C2	C1	O5	110.9°	109.8°
C2	C1	H1	105.5°	109.4°
C1	C2	O2	108.2°	109.6°
C1	C2	C3	105.1°	109.1°
C1	C2	H2	114.7°	109.5°
O5	C1	H1	111.7°	109.3°
C1	O5	C5	106.6°	107.7°
O2	C2	C3	113.9°	109.6°
O2	C2	H2	106.0°	109.6°
C2	O2	C1'	116.4°	106.8°
C3	C2	H2	109.0°	109.5°
C2	C3	O3	118.3°	109.9°
C2	C3	C4	105.5°	108.7°
C2	C3	H3	107.2°	109.5°
O2	C1'	C2'	116.2°	109.5°
O2	C1'	H1'1	109.8°	109.5°
O2	C1'	H1'2	109.8°	109.4°
O3	C3	C4	112.1°	109.7°
O3	C3	H3	99.9°	109.5°
C3	O3	HO3	118.3°	106.8°
C4	C3	H3	114.0°	109.5°
C3	C4	O4	117.7°	109.7°
C3	C4	C5	105.4°	109.1°
C3	C4	H4	108.1°	109.4°
O4	C4	C5	113.2°	109.6°
O4	C4	H4	99.4°	109.5°
C4	O4	HO4	117.6°	106.8°
C5	C4	H4	113.1°	109.5°
C4	C5	O5	102.4°	109.8°
C4	C5	C6	127.0°	109.4°
C4	C5	H5	103.1°	109.4°
O5	C5	C6	110.6°	109.4°
O5	C5	H5	122.2°	109.4°
C6	C5	H5	93.2°	109.4°
C5	C6	O6	121.7°	109.5°
C5	C6	H61	107.9°	109.5°
C5	C6	H62	107.9°	109.4°
O6	C6	H61	107.8°	109.5°
O6	C6	H62	107.8°	109.5°
C6	O6	HO6	121.7°	106.9°
H61	C6	H62	101.9°	109.5°
C2'	C1'	H1'1	109.8°	109.5°
C2'	C1'	H1'2	109.8°	109.5°
C1'	C2'	C3'	112.5°	109.5°
C1'	C2'	H2'1	111.1°	109.5°
C1'	C2'	H2'2	111.1°	109.4°
H1'1	C1'	H1'2	100.3°	109.4°
C3'	C2'	H2'1	111.1°	109.5°
C3'	C2'	H2'2	111.1°	109.4°
C2'	C3'	C4'	111.6°	109.6°
C2'	C3'	H3'1	111.5°	109.5°
C2'	C3'	H3'2	111.4°	109.5°
H2'1	C2'	H2'2	99.3°	109.5°
C4'	C3'	H3'1	111.4°	109.4°
C4'	C3'	H3'2	111.4°	109.4°
C3'	C4'	C5'	110.9°	109.6°
C3'	C4'	H4'1	111.7°	109.5°
C3'	C4'	H4'2	111.7°	109.4°
H3'1	C3'	H3'2	98.9°	109.4°
C5'	C4'	H4'1	111.6°	109.5°
C5'	C4'	H4'2	111.6°	109.5°
C4'	C5'	C6'	114.2°	109.5°
C4'	C5'	H5'1	110.5°	109.5°
C4'	C5'	H5'2	110.5°	109.5°
H4'1	C4'	H4'2	98.8°	109.4°
C6'	C5'	H5'1	110.5°	109.5°
C6'	C5'	H5'2	110.5°	109.4°
C5'	C6'	C7'	109.3°	109.5°
C5'	C6'	H6'1	112.3°	109.5°
C5'	C6'	H6'2	112.3°	109.4°
H5'1	C5'	H5'2	99.8°	109.4°
C7'	C6'	H6'1	112.2°	109.5°
C7'	C6'	H6'2	112.3°	109.4°
C6'	C7'	C8'	109.3°	109.5°
C6'	C7'	H7'1	112.3°	109.4°
C6'	C7'	H7'2	112.3°	109.5°
H6'1	C6'	H6'2	98.2°	109.5°
C8'	C7'	H7'1	112.2°	109.4°
C8'	C7'	H7'2	112.2°	109.5°
C7'	C8'	H8'1	109.4°	109.5°
C7'	C8'	H8'2	112.3°	109.5°
C7'	C8'	H8'3	112.3°	109.4°
H7'1	C7'	H7'2	98.2°	109.5°
H8'1	C8'	H8'2	112.2°	109.5°
H8'1	C8'	H8'3	112.2°	109.4°
H8'2	C8'	H8'3	98.2°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	O5	118.8°	120.0°
O1	C1	C2	H1	120.1°	119.9°
O1	C1	O5	H1	120.2°	119.8°
O1	C1	C2	O2	55.5°	58.9°
O1	C1	C2	C3	177.6°	178.9°
O1	C1	C2	H2	62.6°	61.3°
O1	C1	O5	C5	165.9°	172.4°
C2	C1	O5	H1	117.4°	120.1°
C2	C1	O1	HO1	180.0°	179.9°
C1	C2	O2	C3	116.5°	119.7°
C1	C2	O2	H2	123.5°	120.2°
C1	C2	C3	H2	123.5°	119.8°
C1	C2	O2	C1'	73.0°	90.2°
C1	C2	C3	O3	173.2°	173.5°
C1	C2	C3	C4	60.5°	53.5°
C1	C2	C3	H3	61.4°	66.1°
C2	C1	O5	C5	71.7°	67.5°
O5	C1	O1	HO1	58.6°	59.7°
O5	C1	C2	O2	174.2°	178.9°
O5	C1	C2	C3	63.6°	61.1°
O5	C1	C2	H2	56.1°	58.7°
C1	O5	C5	C4	71.7°	67.5°
C1	O5	C5	C6	150.4°	172.4°
C1	O5	C5	H5	42.6°	52.5°
H1	C1	O1	HO1	62.6°	60.0°
H1	C1	C2	O2	64.6°	61.1°
H1	C1	C2	C3	57.5°	58.9°
H1	C1	C2	H2	177.2°	178.7°
H1	C1	O5	C5	45.7°	52.6°
O2	C2	C3	H2	118.2°	120.2°
O2	C2	C3	O3	54.9°	66.5°
O2	C2	C3	C4	178.7°	173.4°
O2	C2	C3	H3	56.9°	53.8°
C2	O2	C1'	C2'	173.6°	180.0°
C2	O2	C1'	H1'1	61.2°	60.0°
C2	O2	C1'	H1'2	48.2°	59.9°
C3	C2	O2	C1'	170.4°	150.2°
C2	C3	O3	C4	123.1°	119.4°
C2	C3	O3	H3	115.8°	120.3°
C2	C3	C4	H3	117.3°	119.6°
C2	C3	O3	HO3	180.0°	179.4°
C2	C3	C4	O4	166.4°	173.6°
C2	C3	C4	C5	66.3°	53.5°
C2	C3	C4	H4	54.9°	66.3°
H2	C2	O2	C1'	50.5°	30.0°
H2	C2	C3	O3	63.3°	53.7°
H2	C2	C3	C4	63.0°	66.4°
H2	C2	C3	H3	175.1°	174.0°
O2	C1'	C2'	H1'1	125.3°	120.0°
O2	C1'	C2'	H1'2	125.3°	120.0°
O2	C1'	H1'1	H1'2	115.5°	119.9°
O2	C1'	C2'	C3'	156.5°	180.0°
O2	C1'	C2'	H2'1	78.3°	60.0°
O2	C1'	C2'	H2'2	31.3°	60.0°
O3	C3	C4	H3	112.6°	120.2°
O3	C3	C4	O4	36.4°	66.3°
O3	C3	C4	C5	163.7°	173.7°
O3	C3	C4	H4	75.1°	53.8°
C4	C3	O3	HO3	56.9°	60.0°
C3	C4	O4	C5	123.5°	119.8°
C3	C4	O4	H4	116.3°	120.1°
C3	C4	C5	H4	117.9°	119.8°
C3	C4	O4	HO4	180.0°	179.7°
C3	C4	C5	O5	71.1°	61.1°
C3	C4	C5	C6	160.8°	178.8°
C3	C4	C5	H5	56.5°	58.9°
H3	C3	O3	HO3	64.2°	60.3°
H3	C3	C4	O4	76.2°	54.0°
H3	C3	C4	C5	51.1°	66.1°
H3	C3	C4	H4	172.3°	174.1°
O4	C4	C5	H4	112.1°	120.1°
O4	C4	C5	O5	158.9°	178.8°
O4	C4	C5	C6	30.8°	58.6°
O4	C4	C5	H5	73.4°	61.2°
C5	C4	O4	HO4	56.5°	59.9°
C4	C5	O5	C6	137.9°	120.1°
C4	C5	O5	H5	114.3°	120.1°
C4	C5	C6	H5	109.0°	119.8°
C4	C5	C6	O6	62.5°	179.8°
C4	C5	C6	H61	172.2°	59.7°
C4	C5	C6	H62	62.8°	60.3°
H4	C4	O4	HO4	63.7°	60.3°
H4	C4	C5	O5	46.9°	58.7°
H4	C4	C5	C6	81.3°	61.5°
H4	C4	C5	H5	174.5°	178.7°
O5	C5	C6	H5	126.2°	119.8°
O5	C5	C6	O6	62.3°	59.9°
O5	C5	C6	H61	63.0°	180.0°
O5	C5	C6	H62	172.4°	60.1°
C5	C6	O6	H61	125.3°	120.0°
C5	C6	O6	H62	125.3°	119.9°
C5	C6	H61	H62	113.5°	119.9°
C5	C6	O6	HO6	179.9°	179.9°
H5	C5	C6	O6	171.5°	59.9°
H5	C5	C6	H61	63.3°	60.1°
H5	C5	C6	H62	46.2°	179.9°
O6	C6	H61	H62	113.4°	120.0°
H61	C6	O6	HO6	54.7°	59.9°
H62	C6	O6	HO6	54.7°	60.1°
C2'	C1'	H1'1	H1'2	115.6°	120.1°
C1'	C2'	C3'	H2'1	125.2°	120.0°
C1'	C2'	C3'	H2'2	125.3°	120.0°
C1'	C2'	H2'1	H2'2	117.0°	120.0°
C1'	C2'	C3'	C4'	172.9°	180.0°
C1'	C2'	C3'	H3'1	47.6°	59.9°
C1'	C2'	C3'	H3'2	61.8°	60.0°
H1'1	C1'	C2'	C3'	31.2°	60.0°
H1'1	C1'	C2'	H2'1	156.5°	180.0°
H1'1	C1'	C2'	H2'2	94.0°	60.0°
H1'2	C1'	C2'	C3'	78.2°	60.0°
H1'2	C1'	C2'	H2'1	47.1°	60.0°
H1'2	C1'	C2'	H2'2	156.6°	180.0°
C3'	C2'	H2'1	H2'2	117.0°	120.0°
C2'	C3'	C4'	H3'1	125.3°	120.1°
C2'	C3'	C4'	H3'2	125.3°	120.0°
C2'	C3'	H3'1	H3'2	117.3°	120.0°
C2'	C3'	C4'	C5'	176.0°	180.0°
C2'	C3'	C4'	H4'1	50.8°	59.9°
C2'	C3'	C4'	H4'2	58.7°	60.0°
H2'1	C2'	C3'	C4'	61.8°	60.0°
H2'1	C2'	C3'	H3'1	172.9°	180.0°
H2'1	C2'	C3'	H3'2	63.4°	60.0°
H2'2	C2'	C3'	C4'	47.7°	60.1°
H2'2	C2'	C3'	H3'1	77.6°	60.0°
H2'2	C2'	C3'	H3'2	173.0°	180.0°
C4'	C3'	H3'1	H3'2	117.3°	119.9°
C3'	C4'	C5'	H4'1	125.3°	120.1°
C3'	C4'	C5'	H4'2	125.2°	120.0°
C3'	C4'	H4'1	H4'2	117.6°	119.9°
C3'	C4'	C5'	C6'	50.8°	180.0°
C3'	C4'	C5'	H5'1	74.4°	60.0°
C3'	C4'	C5'	H5'2	176.0°	60.0°
H3'1	C3'	C4'	C5'	58.7°	59.9°
H3'1	C3'	C4'	H4'1	176.1°	180.0°
H3'1	C3'	C4'	H4'2	66.5°	60.1°
H3'2	C3'	C4'	C5'	50.8°	60.0°
H3'2	C3'	C4'	H4'1	74.5°	60.1°
H3'2	C3'	C4'	H4'2	176.0°	180.0°
C5'	C4'	H4'1	H4'2	117.6°	119.9°
C4'	C5'	C6'	H5'1	125.3°	120.1°
C4'	C5'	C6'	H5'2	125.2°	120.0°
C4'	C5'	H5'1	H5'2	116.4°	120.0°
C4'	C5'	C6'	C7'	156.0°	180.0°
C4'	C5'	C6'	H6'1	30.7°	59.9°
C4'	C5'	C6'	H6'2	78.8°	60.1°
H4'1	C4'	C5'	C6'	176.1°	59.9°
H4'1	C4'	C5'	H5'1	50.8°	179.9°
H4'1	C4'	C5'	H5'2	58.7°	60.1°
H4'2	C4'	C5'	C6'	74.4°	60.0°
H4'2	C4'	C5'	H5'1	160.3°	60.0°
H4'2	C4'	C5'	H5'2	50.8°	180.0°
C6'	C5'	H5'1	H5'2	116.3°	119.9°
C5'	C6'	C7'	H6'1	125.3°	120.1°
C5'	C6'	C7'	H6'2	125.3°	119.9°
C5'	C6'	H6'1	H6'2	118.2°	119.9°
C5'	C6'	C7'	C8'	168.8°	179.9°
C5'	C6'	C7'	H7'1	43.6°	60.0°
C5'	C6'	C7'	H7'2	66.0°	60.0°
H5'1	C5'	C6'	C7'	78.7°	59.9°
H5'1	C5'	C6'	H6'1	156.0°	180.0°
H5'1	C5'	C6'	H6'2	46.5°	60.0°
H5'2	C5'	C6'	C7'	30.7°	60.0°
H5'2	C5'	C6'	H6'1	94.5°	60.1°
H5'2	C5'	C6'	H6'2	156.0°	180.0°
C7'	C6'	H6'1	H6'2	118.2°	119.9°
C6'	C7'	C8'	H7'1	125.3°	120.0°
C6'	C7'	C8'	H7'2	125.3°	120.0°
C6'	C7'	H7'1	H7'2	118.3°	120.0°
C6'	C7'	C8'	H8'1	180.0°	180.0°
C6'	C7'	C8'	H8'2	54.7°	60.0°
C6'	C7'	C8'	H8'3	54.8°	60.0°
H6'1	C6'	C7'	C8'	65.9°	60.0°
H6'1	C6'	C7'	H7'1	168.9°	179.9°
H6'1	C6'	C7'	H7'2	59.3°	60.1°
H6'2	C6'	C7'	C8'	43.5°	60.0°
H6'2	C6'	C7'	H7'1	81.7°	60.0°
H6'2	C6'	C7'	H7'2	168.7°	179.9°
C8'	C7'	H7'1	H7'2	118.1°	120.0°
C7'	C8'	H8'1	H8'2	125.3°	120.1°
C7'	C8'	H8'1	H8'3	125.3°	119.9°
C7'	C8'	H8'2	H8'3	118.2°	120.0°
H7'1	C7'	C8'	H8'1	54.7°	60.1°
H7'1	C7'	C8'	H8'2	180.0°	60.0°
H7'1	C7'	C8'	H8'3	70.5°	180.0°
H7'2	C7'	C8'	H8'1	54.7°	59.9°
H7'2	C7'	C8'	H8'2	70.5°	180.0°
H7'2	C7'	C8'	H8'3	180.0°	60.0°
H8'1	C8'	H8'2	H8'3	118.1°	119.9°

Definition date:	1999-07-08
Last modified:	2020-07-17
Release status:	REL
Processing site:	RCSB
Derived from:	1TAQ