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Summary Geometry Related PDB entries

BFD

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	0.00Å	1.44Å
N	H	sing	0.00Å	1.02Å
N	H2	sing	0.00Å	1.02Å
CA	C	sing	0.00Å	1.57Å
CA	CB	sing	0.00Å	1.54Å
CA	HA	sing	0.00Å	1.12Å
C	O	doub	0.00Å	1.23Å
C	OXT	sing	0.00Å	1.33Å
CB	CG	sing	0.00Å	1.52Å
CB	HB2	sing	0.00Å	1.12Å
CB	HB3	sing	0.00Å	1.11Å
CG	OD1	sing	0.00Å	1.26Å
CG	OD2	doub	0.00Å	1.25Å
OD1	BE	sing	0.00Å	1.53Å
OXT	HXT	sing	0.00Å	0.95Å
BE	F1	sing	0.00Å	1.51Å
BE	F2	sing	0.00Å	1.51Å
BE	F3	sing	0.00Å	1.52Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	H	104.3°	90.0°
CA	N	H2	114.2°	90.0°
N	CA	C	104.3°	90.0°
N	CA	CB	108.7°	90.0°
N	CA	HA	113.8°	90.0°
H	N	H2	114.2°	90.0°
C	CA	CB	111.3°	90.0°
C	CA	HA	111.5°	90.0°
CA	C	O	122.0°	90.0°
CA	C	OXT	116.7°	90.0°
CB	CA	HA	107.2°	90.0°
CA	CB	CG	112.8°	90.0°
CA	CB	HB2	111.0°	90.0°
CA	CB	HB3	111.0°	90.0°
O	C	OXT	121.3°	90.0°
C	OXT	HXT	116.8°	90.0°
CG	CB	HB2	111.0°	90.0°
CG	CB	HB3	111.0°	90.0°
CB	CG	OD1	117.4°	90.0°
CB	CG	OD2	115.8°	90.0°
HB2	CB	HB3	99.4°	90.0°
OD1	CG	OD2	126.7°	90.0°
CG	OD1	BE	129.9°	90.0°
OD1	BE	F1	106.8°	90.0°
OD1	BE	F2	114.6°	90.0°
OD1	BE	F3	108.2°	90.0°
F1	BE	F2	107.6°	90.0°
F1	BE	F3	110.2°	90.0°
F2	BE	F3	109.4°	90.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	H	H2	125.3°	90.0°
N	CA	C	CB	117.1°	90.0°
N	CA	C	HA	123.3°	90.0°
N	CA	CB	HA	123.5°	90.0°
N	CA	C	O	20.7°	90.0°
N	CA	C	OXT	158.6°	90.0°
N	CA	CB	CG	164.9°	90.0°
N	CA	CB	HB2	69.9°	90.0°
N	CA	CB	HB3	39.6°	90.0°
H	N	CA	C	180.0°	90.0°
H	N	CA	CB	61.2°	90.0°
H	N	CA	HA	58.3°	90.0°
H2	N	CA	C	54.7°	90.0°
H2	N	CA	CB	64.1°	90.0°
H2	N	CA	HA	176.4°	90.0°
C	CA	CB	HA	122.1°	90.0°
CA	C	O	OXT	179.3°	90.0°
C	CA	CB	CG	50.5°	90.0°
C	CA	CB	HB2	175.7°	90.0°
C	CA	CB	HB3	74.8°	90.0°
CA	C	OXT	HXT	179.9°	90.0°
CB	CA	C	O	96.4°	90.0°
CB	CA	C	OXT	84.3°	90.0°
CA	CB	CG	HB2	125.2°	90.0°
CA	CB	CG	HB3	125.3°	90.0°
CA	CB	HB2	HB3	116.8°	90.0°
CA	CB	CG	OD1	56.8°	90.0°
CA	CB	CG	OD2	120.4°	90.0°
HA	CA	C	O	144.0°	90.0°
HA	CA	C	OXT	35.3°	90.0°
HA	CA	CB	CG	71.6°	90.0°
HA	CA	CB	HB2	53.6°	90.0°
HA	CA	CB	HB3	163.1°	90.0°
O	C	OXT	HXT	0.6°	90.0°
CG	CB	HB2	HB3	116.9°	90.0°
CB	CG	OD1	OD2	176.9°	90.0°
CB	CG	OD1	BE	169.5°	90.0°
HB2	CB	CG	OD1	68.4°	90.0°
HB2	CB	CG	OD2	114.4°	90.0°
HB3	CB	CG	OD1	177.9°	90.0°
HB3	CB	CG	OD2	4.9°	90.0°
CG	OD1	BE	F1	141.6°	90.0°
CG	OD1	BE	F2	22.6°	90.0°
CG	OD1	BE	F3	99.7°	90.0°
OD2	CG	OD1	BE	7.4°	90.0°
OD1	BE	F1	F2	123.5°	90.0°
OD1	BE	F1	F3	117.3°	90.0°
OD1	BE	F2	F3	121.7°	90.0°
F1	BE	F2	F3	119.7°	90.0°

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PDB entries from 2024-07-10

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