Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

BDO

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1N1sing1.37Å1.37Å
C1N2sing1.37Å1.30Å
C1N3doub1.30Å1.28Å
N1C3sing1.47Å1.48Å
N1H1sing0.97Å1.00Å
O1C2doub1.21Å1.23Å
C2N2sing1.35Å1.29Å
C2C3sing1.51Å1.45Å
N2C6sing1.46Å1.42Å
C3C4sing1.53Å1.57Å
C3C5sing1.53Å1.56Å
N3H2sing0.97Å1.00Å
C4C15sing1.53Å1.57Å
C4H3sing1.09Å1.10Å
C4H4sing1.09Å1.10Å
C5H5sing1.09Å1.10Å
C5H6sing1.09Å1.10Å
C5H7sing1.09Å1.10Å
C6C7sing1.51Å1.49Å
C6H8sing1.09Å1.10Å
C6H9sing1.09Å1.10Å
C7C8doub1.38Å1.42ÅAromatic
C7C12sing1.38Å1.42ÅAromatic
C8C9sing1.38Å1.41ÅAromatic
C8H10sing1.08Å1.08Å
C9C10doub1.38Å1.40ÅAromatic
C9H11sing1.08Å1.08Å
C10C11sing1.38Å1.41ÅAromatic
C10H12sing1.08Å1.08Å
C11C12doub1.38Å1.41ÅAromatic
C11CL1sing1.74Å1.69Å
C12H13sing1.08Å1.08Å
C13C15sing1.53Å1.56Å
C13H14sing1.09Å1.10Å
C13H15sing1.09Å1.10Å
C13H16sing1.09Å1.10Å
C14C15sing1.53Å1.55Å
C14H17sing1.09Å1.10Å
C14H18sing1.09Å1.10Å
C14H19sing1.09Å1.10Å
C15H20sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C1N2113.9°111.3°
N1C1N3119.3°124.3°
C1N1C3104.6°106.5°
C1N1H1127.7°126.7°
N2C1N3126.7°124.4°
C1N2C2107.6°111.2°
C1N2C6126.9°124.4°
C1N3H2112.0°120.0°
C3N1H1127.7°126.7°
N1C3C2100.2°104.4°
N1C3C4110.5°110.4°
N1C3C5109.9°110.4°
O1C2N2125.0°126.7°
O1C2C3122.7°126.7°
N2C2C3112.3°106.5°
C2N2C6125.5°124.4°
C2C3C4109.4°110.5°
C2C3C5111.6°110.4°
N2C6C7113.5°109.5°
N2C6H8108.2°109.5°
N2C6H9108.1°109.5°
C4C3C5114.4°110.5°
C3C4C15118.6°109.5°
C3C4H3106.5°109.5°
C3C4H4106.5°109.5°
C3C5H5109.5°109.5°
C3C5H6109.5°109.5°
C3C5H7109.5°109.5°
C15C4H3106.5°109.4°
C15C4H4106.5°109.5°
C4C15C13110.6°109.5°
C4C15C14113.8°109.5°
C4C15H20105.8°109.5°
H3C4H4112.3°109.5°
H5C5H6109.4°109.5°
H5C5H7109.5°109.5°
H6C5H7109.5°109.4°
C7C6H8108.2°109.5°
C7C6H9108.2°109.5°
C6C7C8120.4°120.0°
C6C7C12120.9°120.0°
H8C6H9110.8°109.4°
C8C7C12118.7°120.0°
C7C8C9120.6°120.1°
C7C8H10119.7°119.9°
C7C12C11120.8°120.0°
C7C12H13119.6°120.0°
C9C8H10119.7°120.0°
C8C9C10120.1°120.0°
C8C9H11120.0°120.0°
C10C9H11120.0°120.0°
C9C10C11120.1°120.0°
C9C10H12120.0°120.0°
C11C10H12119.9°120.0°
C10C11C12119.8°120.0°
C10C11CL1120.1°120.1°
C12C11CL1120.1°120.0°
C11C12H13119.6°120.0°
C15C13H14109.5°109.5°
C15C13H15109.4°109.5°
C15C13H16109.5°109.5°
C13C15C14110.1°109.5°
C13C15H20109.9°109.5°
H14C13H15109.4°109.5°
H14C13H16109.5°109.5°
H15C13H16109.5°109.4°
C15C14H17109.5°109.5°
C15C14H18109.5°109.5°
C15C14H19109.5°109.5°
C14C15H20106.4°109.4°
H17C14H18109.5°109.5°
H17C14H19109.5°109.4°
H18C14H19109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C1N2N3179.1°179.7°
C1N1C3H1180.0°180.0°
N1C1N2C25.8°0.0°
C1N1C3C28.1°0.0°
N1C1N2C6171.7°180.0°
C1N1C3C4107.2°118.7°
C1N1C3C5125.6°118.7°
N1C1N3H2179.1°180.0°
N2C1N1C32.1°0.0°
N2C1N1H1177.9°180.0°
C1N2C2O1171.2°180.0°
C1N2C2C6177.5°180.0°
C1N2C2C311.8°0.0°
N2C1N3H20.0°0.4°
C1N2C6C7125.7°90.0°
C1N2C6H8114.3°150.0°
C1N2C6H95.7°30.0°
N3C1N1C3178.7°179.7°
N3C1N1H11.3°0.3°
N3C1N2C2173.3°179.7°
N3C1N2C69.2°0.3°
N1C3C2O1170.6°180.0°
N1C3C2N212.4°0.0°
N1C3C2C4116.1°118.7°
N1C3C2C5116.3°118.7°
N1C3C4C5124.6°122.5°
N1C3C4C1576.5°62.7°
N1C3C4H3163.5°57.3°
N1C3C4H443.5°177.3°
N1C3C5H5180.0°64.2°
N1C3C5H660.0°175.8°
N1C3C5H760.0°55.8°
H1N1C3C2171.9°180.0°
H1N1C3C472.7°61.3°
H1N1C3C554.4°61.3°
O1C2N2C3177.0°180.0°
O1C2N2C611.2°0.0°
O1C2C3C473.3°61.3°
O1C2C3C554.3°61.3°
N2C2C3C4103.7°118.7°
N2C2C3C5128.7°118.7°
C2N2C6C751.4°90.0°
C2N2C6H868.6°30.0°
C2N2C6H9171.4°149.9°
C3C2N2C6165.8°180.0°
C2C3C4C5126.0°122.5°
C2C3C4C15174.2°52.3°
C2C3C4H354.2°172.3°
C2C3C4H465.8°67.7°
C2C3C5H569.8°50.8°
C2C3C5H6170.2°69.3°
C2C3C5H750.2°170.8°
N2C6C7H8120.0°120.0°
N2C6C7H9120.0°120.0°
N2C6H8H9118.3°120.0°
N2C6C7C851.3°90.0°
N2C6C7C12127.6°90.3°
C3C4C15H3120.0°120.0°
C3C4C15H4120.0°120.1°
C3C4H3H4116.2°120.1°
C4C3C5H555.1°173.3°
C4C3C5H664.9°53.3°
C4C3C5H7175.1°66.7°
C3C4C15C13176.2°69.0°
C3C4C15C1459.2°171.0°
C3C4C15H2057.2°51.0°
C5C3C4C1548.1°174.8°
C5C3C4H371.8°65.2°
C5C3C4H4168.2°54.8°
C3C5H5H6120.0°120.0°
C3C5H5H7120.0°120.0°
C3C5H6H7120.0°120.0°
C15C4H3H4116.2°120.0°
C4C15C13C14126.7°120.0°
C4C15C13H20116.4°120.0°
C4C15C13H14180.0°50.3°
C4C15C13H1560.0°170.3°
C4C15C13H1660.0°69.8°
C4C15C14H20116.1°120.0°
C4C15C14H17180.0°60.0°
C4C15C14H1860.0°180.0°
C4C15C14H1960.0°60.0°
H3C4C15C1356.2°51.0°
H3C4C15C14179.2°69.0°
H3C4C15H2062.8°171.0°
H4C4C15C1363.8°170.9°
H4C4C15C1460.8°50.9°
H4C4C15H20177.2°69.0°
H5C5H6H7120.0°120.0°
C7C6H8H9118.4°120.0°
C6C7C8C12178.9°179.8°
C6C7C8C9177.6°180.0°
C6C7C8H102.4°0.0°
C6C7C12C11178.4°179.8°
C6C7C12H131.6°0.0°
H8C6C7C8171.3°30.0°
H8C6C7C127.6°149.7°
H9C6C7C868.7°150.0°
H9C6C7C12112.4°29.8°
C7C8C9H10180.0°180.0°
C7C8C9C101.2°0.1°
C7C8C9H11178.9°180.0°
C8C7C12C110.5°0.5°
C8C7C12H13179.5°179.7°
C12C7C8C91.3°0.2°
C12C7C8H10178.7°179.8°
C7C12C11C100.4°0.4°
C7C12C11H13180.0°179.8°
C7C12C11CL1179.7°179.7°
C8C9C10H11180.0°180.0°
C8C9C10C110.2°0.1°
C8C9C10H12179.7°180.0°
H10C8C9C10178.9°180.0°
H10C8C9H111.1°0.0°
C9C10C11H12180.0°179.9°
C9C10C11C120.5°0.2°
C9C10C11CL1179.6°180.0°
H11C9C10C11179.8°179.9°
H11C9C10H120.2°0.0°
C10C11C12CL1179.9°179.9°
C10C11C12H13179.6°179.8°
H12C10C11C12179.5°179.8°
H12C10C11CL10.4°0.1°
CL1C11C12H130.3°0.1°
C15C13H14H15120.0°120.0°
C15C13H14H16120.0°120.0°
C15C13H15H16120.0°120.0°
C13C15C14H20119.0°120.0°
C13C15C14H1755.1°180.0°
C13C15C14H1864.9°60.0°
C13C15C14H19175.1°60.0°
H14C13H15H16120.0°120.0°
H14C13C15C1453.3°69.8°
H14C13C15H2063.5°170.3°
H15C13C15C14173.3°50.3°
H15C13C15H2056.4°69.7°
H16C13C15C1466.7°170.2°
H16C13C15H20176.5°50.3°
C15C14H17H18120.0°120.0°
C15C14H17H19120.0°120.0°
C15C14H18H19120.0°120.0°
H17C14H18H19120.0°120.0°
H17C14C15H2063.9°60.0°
H18C14C15H20176.1°60.0°
H19C14C15H2056.1°180.0°

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon