Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

BDF

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.53Å1.52Å
C1O1sing1.43Å1.42Å
C1H11sing1.09Å1.11Å
C1H12sing1.09Å1.12Å
C2C3sing1.53Å1.56Å
C2O2sing1.43Å1.43Å
C2O6sing1.43Å1.44Å
C3C4sing1.53Å1.53Å
C3O3sing1.43Å1.44Å
C3H3sing1.09Å1.11Å
C4C5sing1.53Å1.53Å
C4O4sing1.43Å1.43Å
C4H4sing1.09Å1.12Å
C5C6sing1.53Å1.52Å
C5O5sing1.43Å1.44Å
C5H5sing1.09Å1.11Å
C6O6sing1.43Å1.45Å
C6H61sing1.09Å1.11Å
C6H62sing1.09Å1.12Å
O1HO1sing0.97Å0.95Å
O2HO2sing0.97Å0.95Å
O3HO3sing0.97Å0.95Å
O4HO4sing0.97Å0.95Å
O5HO5sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1O1112.7°109.5°
C2C1H11111.0°109.5°
C2C1H12111.0°109.5°
C1C2C3111.5°109.4°
C1C2O2111.2°109.4°
C1C2O6105.5°109.4°
O1C1H11111.0°109.5°
O1C1H12111.0°109.5°
C1O1HO1112.7°106.8°
H11C1H1299.3°109.5°
C3C2O2110.2°109.4°
C3C2O6108.7°109.8°
C2C3C4109.7°109.0°
C2C3O3110.4°109.6°
C2C3H3108.4°109.7°
O2C2O6109.6°109.4°
C2O2HO2111.3°106.8°
C2O6C6114.1°107.7°
C4C3O3108.4°109.5°
C4C3H3110.3°109.5°
C3C4C5112.7°108.6°
C3C4O4110.3°109.8°
C3C4H4106.8°109.7°
O3C3H3109.7°109.6°
C3O3HO3110.4°106.9°
C5C4O4109.6°109.6°
C5C4H4107.5°109.6°
C4C5C6108.8°109.0°
C4C5O5110.8°109.7°
C4C5H5108.9°109.5°
O4C4H4110.0°109.6°
C4O4HO4110.3°106.9°
C6C5O5109.1°109.5°
C6C5H5110.7°109.5°
C5C6O6109.9°109.8°
C5C6H61112.0°109.4°
C5C6H62112.0°109.4°
O5C5H5108.7°109.5°
C5O5HO5110.8°106.8°
O6C6H61112.0°109.3°
O6C6H62112.0°109.5°
H61C6H6298.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1O1H11125.3°120.0°
C2C1O1H12125.2°120.0°
C2C1H11H12116.9°120.0°
C1C2C3O2124.0°119.8°
C1C2C3O6115.9°120.1°
C1C2O2O6116.2°119.8°
C1C2C3C4169.8°178.6°
C1C2C3O370.8°58.8°
C1C2C3H349.3°61.5°
C1C2O6C6179.0°172.3°
C2C1O1HO1180.0°180.0°
C1C2O2HO2179.9°60.0°
O1C1H11H12116.9°120.0°
O1C1C2C358.1°179.8°
O1C1C2O2178.5°60.0°
O1C1C2O659.8°59.8°
H11C1C2C3176.6°60.1°
H11C1C2O253.2°180.0°
H11C1C2O665.5°60.2°
H11C1O1HO154.8°60.0°
H12C1C2C367.2°59.8°
H12C1C2O256.3°60.0°
H12C1C2O6175.0°179.8°
H12C1O1HO154.7°60.0°
C3C2O2O6119.6°120.3°
C2C3C4O3120.6°119.9°
C2C3C4H3119.4°120.0°
C2C3O3H3119.3°120.4°
C2C3C4C552.6°53.8°
C2C3C4O4175.4°173.6°
C2C3C4H465.2°65.9°
C3C2O6C661.3°67.6°
C3C2O2HO255.7°179.8°
C2C3O3HO3180.0°179.5°
O2C2C3C466.1°58.7°
O2C2C3O353.2°61.1°
O2C2C3H3173.3°178.6°
O2C2O6C659.2°52.5°
O6C2C3C454.0°61.3°
O6C2C3O3173.3°178.9°
O6C2C3H366.6°58.6°
C2O6C6C563.5°67.5°
C2O6C6H61171.2°52.6°
C2O6C6H6261.7°172.3°
O6C2O2HO263.8°59.9°
C4C3O3H3120.5°120.1°
C3C4C5O4123.2°119.9°
C3C4C5H4117.3°119.8°
C3C4O4H4117.4°120.5°
C3C4C5C653.5°53.8°
C3C4C5O566.3°66.2°
C3C4C5H5174.2°173.6°
C4C3O3HO359.8°60.0°
C3C4O4HO4179.9°179.2°
O3C3C4C5173.1°173.7°
O3C3C4O464.0°66.5°
O3C3C4H455.4°54.0°
H3C3C4C566.8°66.2°
H3C3C4O456.1°53.6°
H3C3C4H4175.5°174.1°
H3C3O3HO360.7°60.1°
C5C4O4H4117.9°120.3°
C4C5C6O5120.9°120.0°
C4C5C6H5119.6°119.8°
C4C5O5H5119.6°120.2°
C4C5C6O656.4°61.2°
C4C5C6H61178.4°58.8°
C4C5C6H6268.9°178.6°
C5C4O4HO455.5°60.0°
C4C5O5HO5180.0°179.6°
O4C4C5C6176.7°173.7°
O4C4C5O556.9°53.8°
O4C4C5H562.6°66.5°
H4C4C5C663.8°66.0°
H4C4C5O5176.3°174.1°
H4C4C5H556.9°53.8°
H4C4O4HO462.5°60.3°
C6C5O5H5120.7°120.1°
C5C6O6H61125.3°120.1°
C5C6O6H62125.2°120.2°
C5C6H61H62117.9°119.9°
C6C5O5HO560.3°60.0°
O5C5C6O664.6°58.8°
O5C5C6H6160.7°178.8°
O5C5C6H62170.2°61.4°
H5C5C6O6175.9°178.9°
H5C5C6H6158.8°61.0°
H5C5C6H6250.7°58.8°
H5C5O5HO560.4°60.1°
O6C6H61H62118.0°119.8°

227111

PDB entries from 2024-11-06

PDB statisticsPDBj update infoContact PDBjnumon