Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

BDB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
B1OB1sing1.42Å1.50Å
B1OB2sing1.42Å1.47Å
B1CP1sing1.57Å1.54Å
OB1HO11sing0.97Å0.95Å
OB2HO21sing0.97Å0.95Å
CP1CP2doub1.39Å1.37ÅAromatic
CP1CP6sing1.39Å1.39ÅAromatic
CP2CP3sing1.38Å1.35ÅAromatic
CP2HC21sing1.08Å1.10Å
CP3CP4doub1.40Å1.42ÅAromatic
CP3HC31sing1.08Å1.10Å
CP4CP5sing1.40Å1.43ÅAromatic
CP4CB1sing1.48Å1.49ÅAromatic
CP5CP6doub1.38Å1.37ÅAromatic
CP5HC51sing1.08Å1.10Å
CP6HC61sing1.08Å1.10Å
CB1CB2doub1.39Å1.38ÅAromatic
CB1CB6sing1.40Å1.39ÅAromatic
CB2CB3sing1.38Å1.36ÅAromatic
CB2HB21sing1.08Å1.10Å
CB3CB4doub1.39Å1.42ÅAromatic
CB3HB31sing1.08Å1.10Å
CB4CB5sing1.40Å1.41ÅAromatic
CB4B2sing1.57Å1.48Å
CB5CB6doub1.38Å1.36ÅAromatic
CB5HB51sing1.08Å1.10Å
CB6HB61sing1.08Å1.10Å
B2OH1sing1.42Å1.46Å
B2OH2sing1.42Å1.47Å
OH1HH11sing0.97Å0.95Å
OH2HH21sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OB1B1OB2109.7°120.0°
OB1B1CP1108.1°120.0°
B1OB1HO11109.7°106.8°
OB2B1CP1110.6°120.1°
B1OB2HO21109.7°106.8°
B1CP1CP2117.6°119.9°
B1CP1CP6121.6°120.1°
CP2CP1CP6120.6°120.0°
CP1CP2CP3121.2°120.0°
CP1CP2HC21120.3°120.0°
CP1CP6CP5120.3°120.0°
CP1CP6HC61120.5°120.0°
CP3CP2HC21118.5°120.0°
CP2CP3CP4120.2°120.0°
CP2CP3HC31117.3°120.0°
CP4CP3HC31122.5°120.0°
CP3CP4CP5118.2°120.0°
CP3CP4CB1119.2°120.0°
CP5CP4CB1122.5°120.0°
CP4CP5CP6119.5°120.0°
CP4CP5HC51122.5°120.0°
CP4CB1CB2120.8°120.0°
CP4CB1CB6119.6°120.0°
CP6CP5HC51118.0°120.0°
CP5CP6HC61119.2°120.0°
CB2CB1CB6119.5°120.0°
CB1CB2CB3121.0°120.0°
CB1CB2HB21120.3°120.0°
CB1CB6CB5121.3°120.0°
CB1CB6HB61120.3°120.0°
CB3CB2HB21118.8°120.0°
CB2CB3CB4119.9°120.1°
CB2CB3HB31117.9°119.9°
CB4CB3HB31122.2°120.0°
CB3CB4CB5118.7°120.0°
CB3CB4B2120.8°120.1°
CB5CB4B2120.5°120.0°
CB4CB5CB6119.5°120.0°
CB4CB5HB51122.1°120.0°
CB4B2OH1124.2°120.0°
CB4B2OH2124.0°120.0°
CB6CB5HB51118.4°120.0°
CB5CB6HB61118.3°120.0°
OH1B2OH2111.8°120.0°
B2OH1HH11124.2°106.7°
B2OH2HH21124.0°106.8°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OB1B1OB2CP1119.2°179.9°
OB1B1OB2HO21180.0°0.1°
OB1B1CP1CP253.5°179.9°
OB1B1CP1CP6122.1°0.2°
OB2B1OB1HO11180.0°0.1°
OB2B1CP1CP2173.5°0.0°
OB2B1CP1CP62.1°179.8°
CP1B1OB1HO1159.3°180.0°
CP1B1OB2HO2160.8°180.0°
B1CP1CP2CP6175.6°179.8°
B1CP1CP2CP3174.3°180.0°
B1CP1CP2HC215.7°0.1°
B1CP1CP6CP5174.1°179.8°
B1CP1CP6HC615.9°0.1°
CP1CP2CP3HC21180.0°180.0°
CP1CP2CP3CP40.2°0.0°
CP1CP2CP3HC31179.8°179.9°
CP2CP1CP6CP51.3°0.4°
CP2CP1CP6HC61178.7°180.0°
CP6CP1CP2CP31.3°0.2°
CP6CP1CP2HC21178.7°179.8°
CP1CP6CP5CP40.1°0.4°
CP1CP6CP5HC61180.0°179.6°
CP1CP6CP5HC51179.9°179.7°
CP2CP3CP4HC31180.0°179.9°
CP2CP3CP4CP51.6°0.0°
CP2CP3CP4CB1174.9°180.0°
HC21CP2CP3CP4179.8°180.0°
HC21CP2CP3HC310.2°0.0°
CP3CP4CP5CB1176.4°180.0°
CP3CP4CP5CP61.6°0.2°
CP3CP4CP5HC51178.4°179.9°
CP3CP4CB1CB239.9°140.4°
CP3CP4CB1CB6136.9°40.0°
HC31CP3CP4CP5178.4°179.9°
HC31CP3CP4CB15.1°0.1°
CP4CP5CP6HC51180.0°179.9°
CP4CP5CP6HC61179.8°180.0°
CP5CP4CB1CB2143.8°39.6°
CP5CP4CB1CB639.4°140.0°
CB1CP4CP5CP6174.8°179.8°
CB1CP4CP5HC515.2°0.1°
CP4CB1CB2CB6176.8°179.7°
CP4CB1CB2CB3175.8°180.0°
CP4CB1CB2HB214.2°0.1°
CP4CB1CB6CB5175.8°179.8°
CP4CB1CB6HB614.2°0.3°
HC51CP5CP6HC610.1°0.1°
CB1CB2CB3HB21180.0°179.9°
CB1CB2CB3CB40.0°0.0°
CB1CB2CB3HB31180.0°179.9°
CB2CB1CB6CB51.0°0.5°
CB2CB1CB6HB61179.0°179.9°
CB6CB1CB2CB31.0°0.3°
CB6CB1CB2HB21179.0°179.8°
CB1CB6CB5CB40.0°0.5°
CB1CB6CB5HB61180.0°179.5°
CB1CB6CB5HB51180.0°179.7°
CB2CB3CB4HB31180.0°179.9°
CB2CB3CB4CB51.0°0.0°
CB2CB3CB4B2178.0°180.0°
HB21CB2CB3CB4180.0°179.9°
HB21CB2CB3HB310.0°0.0°
CB3CB4CB5B2179.0°180.0°
CB3CB4CB5CB61.0°0.2°
CB3CB4CB5HB51179.0°180.0°
CB3CB4B2OH179.9°180.0°
CB3CB4B2OH2100.3°0.0°
HB31CB3CB4CB5179.0°179.9°
HB31CB3CB4B22.0°0.1°
CB4CB5CB6HB51180.0°179.7°
CB4CB5CB6HB61180.0°180.0°
CB5CB4B2OH1101.1°0.0°
CB5CB4B2OH278.7°180.0°
B2CB4CB5CB6178.0°179.8°
B2CB4CB5HB512.0°0.0°
CB4B2OH1OH2179.8°180.0°
CB4B2OH1HH11180.0°180.0°
CB4B2OH2HH21180.0°0.0°
HB51CB5CB6HB610.0°0.2°
OH1B2OH2HH210.2°180.0°
OH2B2OH1HH110.2°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon