Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C' | C1 | doub | 1.29Å | 1.36Å | |
C' | C4 | sing | 1.50Å | 1.52Å | |
C' | H' | sing | 1.08Å | 1.10Å | |
C1 | C2 | sing | 1.51Å | 1.52Å | |
C1 | H1 | sing | 1.08Å | 1.10Å | |
C2 | C3 | sing | 1.54Å | 1.53Å | |
C2 | C6 | sing | 1.54Å | 1.52Å | |
C2 | C8 | sing | 1.51Å | 1.53Å | |
C3 | C5 | sing | 1.53Å | 1.55Å | |
C3 | H31 | sing | 1.09Å | 1.12Å | |
C3 | H32 | sing | 1.09Å | 1.12Å | |
C4 | C5 | sing | 1.52Å | 1.54Å | |
C4 | O1 | sing | 1.43Å | 1.41Å | |
C4 | H4 | sing | 1.09Å | 1.11Å | |
C5 | O' | sing | 1.41Å | 1.41Å | |
C5 | H5 | sing | 1.09Å | 1.12Å | |
C6 | C7 | sing | 1.53Å | 1.53Å | |
C6 | H61 | sing | 1.09Å | 1.12Å | |
C6 | H62 | sing | 1.09Å | 1.11Å | |
C7 | C9 | sing | 1.51Å | 1.54Å | |
C7 | O' | sing | 1.42Å | 1.41Å | |
C7 | H7 | sing | 1.09Å | 1.12Å | |
C8 | O4 | doub | 1.21Å | 1.24Å | |
C8 | O5 | sing | 1.34Å | 1.26Å | |
C9 | O2 | doub | 1.21Å | 1.23Å | |
C9 | O3 | sing | 1.34Å | 1.22Å | |
O1 | HO1 | sing | 0.97Å | 0.95Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
O5 | HO5 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C1 | C' | C4 | 124.1° | 124.9° |
C1 | C' | H' | 111.9° | 117.6° |
C' | C1 | C2 | 122.6° | 122.9° |
C' | C1 | H1 | 113.0° | 118.5° |
C4 | C' | H' | 124.0° | 117.5° |
C' | C4 | C5 | 109.2° | 111.6° |
C' | C4 | O1 | 106.5° | 109.1° |
C' | C4 | H4 | 113.8° | 109.0° |
C2 | C1 | H1 | 124.4° | 118.6° |
C1 | C2 | C3 | 109.8° | 108.3° |
C1 | C2 | C6 | 107.3° | 106.9° |
C1 | C2 | C8 | 108.3° | 111.3° |
C3 | C2 | C6 | 110.3° | 106.8° |
C3 | C2 | C8 | 110.1° | 111.3° |
C2 | C3 | C5 | 105.0° | 107.7° |
C2 | C3 | H31 | 113.9° | 109.8° |
C2 | C3 | H32 | 113.9° | 109.8° |
C6 | C2 | C8 | 110.8° | 112.0° |
C2 | C6 | C7 | 113.2° | 106.5° |
C2 | C6 | H61 | 110.8° | 111.8° |
C2 | C6 | H62 | 110.9° | 108.8° |
C2 | C8 | O4 | 115.1° | 120.0° |
C2 | C8 | O5 | 120.8° | 120.0° |
C5 | C3 | H31 | 113.9° | 109.8° |
C5 | C3 | H32 | 113.9° | 109.8° |
C3 | C5 | C4 | 115.4° | 109.9° |
C3 | C5 | O' | 110.6° | 112.0° |
C3 | C5 | H5 | 104.4° | 107.5° |
H31 | C3 | H32 | 96.5° | 109.8° |
C5 | C4 | O1 | 115.4° | 109.0° |
C5 | C4 | H4 | 104.7° | 109.0° |
C4 | C5 | O' | 109.5° | 112.1° |
C4 | C5 | H5 | 105.7° | 107.5° |
O1 | C4 | H4 | 107.4° | 109.1° |
C4 | O1 | HO1 | 106.5° | 106.8° |
O' | C5 | H5 | 111.0° | 107.6° |
C5 | O' | C7 | 121.8° | 110.1° |
C7 | C6 | H61 | 110.9° | 109.8° |
C7 | C6 | H62 | 110.9° | 109.9° |
C6 | C7 | C9 | 116.7° | 110.8° |
C6 | C7 | O' | 111.7° | 109.2° |
C6 | C7 | H7 | 102.5° | 108.6° |
H61 | C6 | H62 | 99.4° | 110.0° |
C9 | C7 | O' | 109.6° | 109.4° |
C9 | C7 | H7 | 105.1° | 109.4° |
C7 | C9 | O2 | 120.2° | 120.0° |
C7 | C9 | O3 | 118.7° | 119.9° |
O' | C7 | H7 | 110.8° | 109.4° |
O4 | C8 | O5 | 124.1° | 120.0° |
C8 | O5 | HO5 | 120.8° | 120.0° |
O2 | C9 | O3 | 121.1° | 120.1° |
C9 | O3 | HO3 | 118.7° | 119.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C1 | C' | C4 | H' | 180.0° | 179.8° |
C' | C1 | C2 | H1 | 180.0° | 179.9° |
C' | C1 | C2 | C3 | 23.3° | 25.8° |
C' | C1 | C2 | C6 | 96.7° | 89.0° |
C' | C1 | C2 | C8 | 143.6° | 148.4° |
C1 | C' | C4 | C5 | 3.6° | 9.0° |
C1 | C' | C4 | O1 | 128.8° | 111.5° |
C1 | C' | C4 | H4 | 113.0° | 129.5° |
C4 | C' | C1 | C2 | 9.2° | 1.5° |
C4 | C' | C1 | H1 | 170.8° | 178.5° |
C' | C4 | C5 | C3 | 34.9° | 41.1° |
C' | C4 | C5 | O1 | 119.9° | 120.5° |
C' | C4 | C5 | H4 | 122.2° | 120.5° |
C' | C4 | O1 | H4 | 122.4° | 119.0° |
C' | C4 | C5 | O' | 90.7° | 84.2° |
C' | C4 | C5 | H5 | 149.7° | 157.8° |
C' | C4 | O1 | HO1 | 179.9° | 59.0° |
H' | C' | C1 | C2 | 170.8° | 178.6° |
H' | C' | C1 | H1 | 9.2° | 1.3° |
H' | C' | C4 | C5 | 176.4° | 171.1° |
H' | C' | C4 | O1 | 51.2° | 68.3° |
H' | C' | C4 | H4 | 67.1° | 50.6° |
C1 | C2 | C3 | C6 | 118.1° | 114.8° |
C1 | C2 | C3 | C8 | 119.2° | 122.7° |
C1 | C2 | C6 | C8 | 118.1° | 122.2° |
C1 | C2 | C3 | C5 | 56.0° | 56.4° |
C1 | C2 | C3 | H31 | 69.3° | 63.1° |
C1 | C2 | C3 | H32 | 178.7° | 176.0° |
C1 | C2 | C6 | C7 | 65.5° | 54.1° |
C1 | C2 | C6 | H61 | 169.2° | 174.1° |
C1 | C2 | C6 | H62 | 59.8° | 64.3° |
C1 | C2 | C8 | O4 | 35.9° | 119.9° |
C1 | C2 | C8 | O5 | 144.1° | 59.9° |
H1 | C1 | C2 | C3 | 156.7° | 154.3° |
H1 | C1 | C2 | C6 | 83.3° | 91.0° |
H1 | C1 | C2 | C8 | 36.4° | 31.7° |
C3 | C2 | C6 | C8 | 122.2° | 122.0° |
C2 | C3 | C5 | H31 | 125.3° | 119.6° |
C2 | C3 | C5 | H32 | 125.3° | 119.6° |
C2 | C3 | H31 | H32 | 119.8° | 120.9° |
C2 | C3 | C5 | C4 | 65.6° | 66.3° |
C2 | C3 | C5 | O' | 59.4° | 59.0° |
C2 | C3 | C5 | H5 | 178.9° | 177.0° |
C3 | C2 | C6 | C7 | 54.1° | 61.7° |
C3 | C2 | C6 | H61 | 71.1° | 58.3° |
C3 | C2 | C6 | H62 | 179.5° | 180.0° |
C3 | C2 | C8 | O4 | 156.1° | 1.0° |
C3 | C2 | C8 | O5 | 24.0° | 179.1° |
C6 | C2 | C3 | C5 | 62.1° | 58.4° |
C6 | C2 | C3 | H31 | 172.6° | 177.9° |
C6 | C2 | C3 | H32 | 63.2° | 61.2° |
C2 | C6 | C7 | H61 | 125.2° | 121.3° |
C2 | C6 | C7 | H62 | 125.3° | 117.7° |
C2 | C6 | H61 | H62 | 116.7° | 121.0° |
C2 | C6 | C7 | C9 | 87.5° | 55.6° |
C2 | C6 | C7 | O' | 39.6° | 65.0° |
C2 | C6 | C7 | H7 | 158.3° | 175.8° |
C6 | C2 | C8 | O4 | 81.6° | 120.5° |
C6 | C2 | C8 | O5 | 98.4° | 59.7° |
C8 | C2 | C3 | C5 | 175.3° | 179.1° |
C8 | C2 | C3 | H31 | 50.0° | 59.6° |
C8 | C2 | C3 | H32 | 59.4° | 61.3° |
C8 | C2 | C6 | C7 | 176.4° | 176.3° |
C8 | C2 | C6 | H61 | 51.1° | 63.7° |
C8 | C2 | C6 | H62 | 58.3° | 57.9° |
C2 | C8 | O4 | O5 | 180.0° | 179.8° |
C2 | C8 | O5 | HO5 | 180.0° | 179.9° |
C5 | C3 | H31 | H32 | 119.8° | 120.9° |
C3 | C5 | C4 | O' | 125.5° | 125.2° |
C3 | C5 | C4 | H5 | 114.8° | 116.7° |
C3 | C5 | C4 | O1 | 85.1° | 79.5° |
C3 | C5 | C4 | H4 | 157.1° | 161.6° |
C3 | C5 | O' | H5 | 115.4° | 118.0° |
C3 | C5 | O' | C7 | 52.4° | 62.1° |
H31 | C3 | C5 | C4 | 59.7° | 53.3° |
H31 | C3 | C5 | O' | 175.3° | 178.6° |
H31 | C3 | C5 | H5 | 55.8° | 63.4° |
H32 | C3 | C5 | C4 | 169.2° | 174.1° |
H32 | C3 | C5 | O' | 65.9° | 60.6° |
H32 | C3 | C5 | H5 | 53.6° | 57.4° |
C5 | C4 | O1 | H4 | 116.3° | 119.0° |
C4 | C5 | O' | H5 | 116.3° | 117.9° |
C4 | C5 | O' | C7 | 75.8° | 62.0° |
C5 | C4 | O1 | HO1 | 58.6° | 179.0° |
O1 | C4 | C5 | O' | 149.4° | 155.3° |
O1 | C4 | C5 | H5 | 29.8° | 37.3° |
H4 | C4 | C5 | O' | 31.6° | 36.3° |
H4 | C4 | C5 | H5 | 88.1° | 81.7° |
H4 | C4 | O1 | HO1 | 57.7° | 60.0° |
C5 | O' | C7 | C6 | 40.7° | 64.7° |
C5 | O' | C7 | C9 | 90.3° | 56.7° |
C5 | O' | C7 | H7 | 154.3° | 176.5° |
H5 | C5 | O' | C7 | 167.8° | 179.9° |
C7 | C6 | H61 | H62 | 116.8° | 121.0° |
C6 | C7 | C9 | O' | 128.2° | 120.4° |
C6 | C7 | C9 | H7 | 112.7° | 119.8° |
C6 | C7 | O' | H7 | 113.6° | 118.8° |
C6 | C7 | C9 | O2 | 140.0° | 153.4° |
C6 | C7 | C9 | O3 | 39.9° | 26.8° |
H61 | C6 | C7 | C9 | 147.2° | 176.8° |
H61 | C6 | C7 | O' | 85.6° | 56.3° |
H61 | C6 | C7 | H7 | 33.0° | 63.0° |
H62 | C6 | C7 | C9 | 37.8° | 62.1° |
H62 | C6 | C7 | O' | 164.9° | 177.4° |
H62 | C6 | C7 | H7 | 76.4° | 58.1° |
C9 | C7 | O' | H7 | 115.5° | 119.8° |
C7 | C9 | O2 | O3 | 179.9° | 179.9° |
C7 | C9 | O3 | HO3 | 180.0° | 180.0° |
O' | C7 | C9 | O2 | 11.8° | 33.0° |
O' | C7 | C9 | O3 | 168.1° | 147.2° |
H7 | C7 | C9 | O2 | 107.3° | 86.9° |
H7 | C7 | C9 | O3 | 72.8° | 93.0° |
O4 | C8 | O5 | HO5 | 0.0° | 0.1° |
O2 | C9 | O3 | HO3 | 0.1° | 0.1° |