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SummaryGeometryRelated PDB entries

BAK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C1C2sing1.40Å1.44ÅAromatic
C1C6doub1.39Å1.42ÅAromatic
C1C7sing1.48Å1.42Å
C2C3doub1.36Å1.41ÅAromatic
C2H2sing1.08Å1.08Å
C3C4sing1.40Å1.39ÅAromatic
C3H3sing1.08Å1.08Å
C4C5doub1.41Å1.35ÅAromatic
C4N3sing1.34Å1.30ÅAromatic
C5C6sing1.39Å1.38ÅAromatic
C5N4sing1.38Å1.32ÅAromatic
C6H6sing1.08Å1.08Å
C7N1doub1.33Å1.30Å
C7N2sing1.33Å1.31Å
C8C9sing1.48Å1.44Å
C8N3doub1.31Å1.29ÅAromatic
C8N4sing1.37Å1.31ÅAromatic
C9C8'sing1.48Å1.45Å
C9O9doub1.22Å1.22Å
N1HH11sing0.97Å1.00Å
N1HH12sing0.97Å0.99Å
N2HH21sing0.97Å1.01Å
N2HH22sing0.97Å0.99Å
N4HN4sing0.97Å1.02Å
C1'C2'sing1.40Å1.43ÅAromatic
C1'C6'doub1.39Å1.44ÅAromatic
C1'C7'sing1.48Å1.40Å
C2'C3'doub1.36Å1.40ÅAromatic
C2'H2'sing1.08Å1.08Å
C3'C4'sing1.40Å1.38ÅAromatic
C3'H3'sing1.08Å1.08Å
C4'C5'doub1.41Å1.33ÅAromatic
C4'N3'sing1.34Å1.30ÅAromatic
C5'C6'sing1.39Å1.39ÅAromatic
C5'N4'sing1.38Å1.32ÅAromatic
C6'H6'sing1.08Å1.08Å
C7'N1'doub1.33Å1.31Å
C7'N2'sing1.33Å1.31Å
C8'N3'doub1.31Å1.28ÅAromatic
C8'N4'sing1.37Å1.30ÅAromatic
N1'H1'1sing0.97Å1.00Å
N1'H1'2sing0.97Å1.01Å
N2'H2'1sing0.97Å1.01Å
N2'H2'2sing0.97Å1.00Å
N4'HN4'sing0.97Å1.02Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C2C1C6117.6°120.2°
C2C1C7122.3°119.9°
C1C2C3122.3°120.6°
C1C2H2119.4°119.7°
C6C1C7120.1°119.9°
C1C6C5118.9°119.6°
C1C6H6121.3°120.2°
C1C7N1119.3°120.0°
C1C7N2121.5°120.0°
C3C2H2118.3°119.7°
C2C3C4115.8°120.0°
C2C3H3122.0°120.0°
C4C3H3122.2°120.0°
C3C4C5123.8°119.6°
C3C4N3129.9°133.2°
C5C4N3106.4°107.2°
C4C5C6121.6°120.0°
C4C5N4108.8°106.2°
C4N3C8108.8°109.8°
C6C5N4129.6°133.9°
C5C6H6119.9°120.2°
C5N4C8105.4°107.0°
C5N4HN4127.6°126.5°
N1C7N2119.2°120.0°
C7N1HH11120.7°120.0°
C7N1HH12123.1°120.0°
C7N2HH21120.0°120.1°
C7N2HH22122.2°120.0°
C9C8N3124.1°125.1°
C9C8N4125.1°125.1°
C8C9C8'129.5°120.0°
C8C9O9115.1°120.0°
N3C8N4110.7°109.8°
C8N4HN4127.0°126.5°
C8'C9O9115.4°120.0°
C9C8'N3'123.7°125.1°
C9C8'N4'127.8°125.2°
HH11N1HH12116.2°120.0°
HH21N2HH22117.7°119.9°
C2'C1'C6'117.4°120.2°
C2'C1'C7'121.0°119.9°
C1'C2'C3'121.7°120.6°
C1'C2'H2'120.2°119.7°
C6'C1'C7'121.6°119.9°
C1'C6'C5'118.7°119.6°
C1'C6'H6'121.2°120.2°
C1'C7'N1'120.7°119.9°
C1'C7'N2'119.1°120.0°
C3'C2'H2'118.1°119.7°
C2'C3'C4'116.7°120.1°
C2'C3'H3'121.5°120.0°
C4'C3'H3'121.8°119.9°
C3'C4'C5'124.0°119.5°
C3'C4'N3'129.2°133.2°
C5'C4'N3'106.8°107.2°
C4'C5'C6'121.5°119.9°
C4'C5'N4'107.3°106.2°
C4'N3'C8'109.7°109.8°
C6'C5'N4'131.2°133.9°
C5'C6'H6'120.1°120.2°
C5'N4'C8'107.6°107.1°
C5'N4'HN4'126.5°126.5°
N1'C7'N2'120.2°120.1°
C7'N1'H1'1120.0°120.1°
C7'N1'H1'2124.3°119.9°
C7'N2'H2'1118.9°120.0°
C7'N2'H2'2122.4°120.1°
N3'C8'N4'108.4°109.7°
C8'N4'HN4'125.8°126.4°
H1'1N1'H1'2115.7°120.0°
H2'1N2'H2'2116.7°119.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C2C1C6C7179.9°179.7°
C1C2C3H2179.9°180.0°
C1C2C3C40.1°0.0°
C1C2C3H3179.7°180.0°
C2C1C6C50.1°0.5°
C2C1C6H6179.7°179.7°
C2C1C7N1167.9°180.0°
C2C1C7N212.0°0.0°
C6C1C2C30.2°0.3°
C6C1C2H2179.9°179.7°
C1C6C5C40.0°0.5°
C1C6C5H6179.8°179.8°
C1C6C5N4178.7°179.8°
C6C1C7N112.0°0.3°
C6C1C7N2168.1°179.7°
C7C1C2C3179.8°180.0°
C7C1C2H20.2°0.0°
C7C1C6C5179.8°179.7°
C7C1C6H60.4°0.1°
C1C7N1N2179.9°180.0°
C1C7N1HH114.0°0.0°
C1C7N1HH12173.5°180.0°
C1C7N2HH212.8°180.0°
C1C7N2HH22179.2°0.3°
C2C3C4H3179.6°179.9°
C2C3C4C50.1°0.0°
C2C3C4N3178.6°180.0°
H2C2C3C4180.0°180.0°
H2C2C3H30.4°0.1°
C3C4C5N3179.0°180.0°
C3C4C5C60.1°0.2°
C3C4C5N4179.1°180.0°
C3C4N3C8178.6°180.0°
H3C3C4C5179.5°180.0°
H3C3C4N31.8°0.1°
C4C5C6N4178.8°179.7°
C4C5C6H6179.8°179.7°
C5C4N3C80.3°0.0°
C4C5N4C80.4°0.0°
C4C5N4HN4179.5°179.9°
N3C4C5C6178.9°179.8°
N3C4C5N40.1°0.0°
C4N3C8C9175.3°180.0°
C4N3C8N40.6°0.0°
C6C5N4C8178.4°179.7°
C6C5N4HN41.6°0.2°
N4C5C6H61.5°0.0°
C5N4C8C9175.2°180.0°
C5N4C8N30.6°0.0°
C5N4C8HN4180.0°179.9°
C7N1HH11HH12177.7°180.0°
N1C7N2HH21177.1°0.0°
N1C7N2HH220.7°179.7°
N2C7N1HH11176.0°180.0°
N2C7N1HH126.5°0.0°
C7N2HH21HH22176.6°179.7°
C9C8N3N4175.9°180.0°
C8C9C8'O9179.4°179.9°
C9C8N4HN44.8°0.0°
C8C9C8'N3'1.4°0.2°
C8C9C8'N4'177.8°180.0°
N3C8C9C8'4.8°0.0°
N3C8C9O9175.9°180.0°
N3C8N4HN4179.3°179.9°
N4C8C9C8'170.6°180.0°
N4C8C9O98.8°0.1°
C9C8'N3'C4'179.9°179.8°
C9C8'N4'C5'179.8°180.0°
C9C8'N3'N4'179.3°179.8°
C9C8'N4'HN4'0.1°0.0°
O9C9C8'N3'178.0°179.7°
O9C9C8'N4'2.8°0.1°
C2'C1'C6'C7'179.8°179.9°
C1'C2'C3'H2'179.9°179.9°
C1'C2'C3'C4'0.1°0.0°
C1'C2'C3'H3'180.0°179.9°
C2'C1'C6'C5'0.3°0.0°
C2'C1'C6'H6'179.8°180.0°
C2'C1'C7'N1'177.6°30.1°
C2'C1'C7'N2'2.1°150.0°
C6'C1'C2'C3'0.1°0.0°
C6'C1'C2'H2'179.8°179.9°
C1'C6'C5'C4'0.4°0.0°
C1'C6'C5'H6'179.5°180.0°
C1'C6'C5'N4'179.9°179.9°
C6'C1'C7'N1'2.1°150.0°
C6'C1'C7'N2'178.1°29.9°
C7'C1'C2'C3'179.7°179.9°
C7'C1'C2'H2'0.4°0.0°
C7'C1'C6'C5'179.4°180.0°
C7'C1'C6'H6'0.0°0.1°
C1'C7'N1'N2'179.8°179.9°
C1'C7'N1'H1'11.4°0.1°
C1'C7'N1'H1'2179.6°180.0°
C1'C7'N2'H2'18.6°180.0°
C1'C7'N2'H2'2172.2°0.1°
C2'C3'C4'H3'179.9°179.9°
C2'C3'C4'C5'0.0°0.1°
C2'C3'C4'N3'180.0°179.6°
H2'C2'C3'C4'180.0°179.9°
H2'C2'C3'H3'0.1°0.0°
C3'C4'C5'N3'180.0°179.7°
C3'C4'C5'C6'0.3°0.0°
C3'C4'C5'N4'180.0°180.0°
C3'C4'N3'C8'179.7°179.9°
H3'C3'C4'C5'179.9°179.9°
H3'C3'C4'N3'0.1°0.5°
C4'C5'C6'N4'179.7°179.9°
C4'C5'C6'H6'179.9°180.0°
C5'C4'N3'C8'0.4°0.4°
C4'C5'N4'C8'0.3°0.0°
C4'C5'N4'HN4'179.7°180.0°
N3'C4'C5'C6'179.7°179.7°
N3'C4'C5'N4'0.0°0.3°
C4'N3'C8'N4'0.5°0.4°
C6'C5'N4'C8'180.0°179.9°
C6'C5'N4'HN4'0.0°0.1°
N4'C5'C6'H6'0.4°0.1°
C5'N4'C8'N3'0.5°0.3°
C5'N4'C8'HN4'180.0°180.0°
C7'N1'H1'1H1'2179.1°179.9°
N1'C7'N2'H2'1171.6°0.0°
N1'C7'N2'H2'28.0°180.0°
N2'C7'N1'H1'1178.8°180.0°
N2'C7'N1'H1'20.2°0.0°
C7'N2'H2'1H2'2164.5°180.0°
N3'C8'N4'HN4'179.5°179.8°

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PDB entries from 2024-10-09

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