B8R
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C18 | N5 | sing | 1.46Å | 1.47Å | |
C19 | N5 | sing | 1.46Å | 1.48Å | |
N5 | C17 | sing | 1.35Å | 1.37Å | |
N4 | C16 | sing | 1.47Å | 1.48Å | |
C17 | O5 | doub | 1.21Å | 1.23Å | |
C17 | C16 | sing | 1.51Å | 1.43Å | |
C16 | C20 | sing | 1.53Å | 1.57Å | |
C20 | C21 | sing | 1.53Å | 1.52Å | |
C21 | C22 | sing | 1.53Å | 1.53Å | |
CG | CD | sing | 1.53Å | 1.53Å | |
CG | C23 | sing | 1.53Å | 1.52Å | |
CD | CB | sing | 1.53Å | 1.53Å | |
C22 | C23 | sing | 1.53Å | 1.53Å | |
C | CA | sing | 1.51Å | 1.39Å | |
C | O | doub | 1.21Å | 1.23Å | |
CA | CB | sing | 1.53Å | 1.52Å | |
CA | N | sing | 1.47Å | 1.47Å | |
C | OXT | sing | 1.34Å | 1.03Å | |
N4 | H27 | sing | 1.01Å | 1.00Å | |
N4 | H3 | sing | 1.01Å | 1.00Å | |
C16 | H5 | sing | 1.09Å | 1.10Å | |
C18 | H6 | sing | 1.09Å | 1.10Å | |
C18 | H7 | sing | 1.09Å | 1.10Å | |
C18 | H8 | sing | 1.09Å | 1.10Å | |
C19 | H9 | sing | 1.09Å | 1.10Å | |
C19 | H10 | sing | 1.09Å | 1.10Å | |
C19 | H11 | sing | 1.09Å | 1.10Å | |
C20 | H12 | sing | 1.09Å | 1.10Å | |
C20 | H13 | sing | 1.09Å | 1.10Å | |
C21 | H14 | sing | 1.09Å | 1.10Å | |
C21 | H15 | sing | 1.09Å | 1.10Å | |
C22 | H16 | sing | 1.09Å | 1.10Å | |
C22 | H17 | sing | 1.09Å | 1.10Å | |
C23 | H18 | sing | 1.09Å | 1.10Å | |
C23 | H19 | sing | 1.09Å | 1.10Å | |
CG | H20 | sing | 1.09Å | 1.10Å | |
CG | H21 | sing | 1.09Å | 1.10Å | |
CD | H22 | sing | 1.09Å | 1.10Å | |
CD | H23 | sing | 1.09Å | 1.10Å | |
CB | H24 | sing | 1.09Å | 1.10Å | |
CB | H25 | sing | 1.09Å | 1.10Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
N | H2 | sing | 1.01Å | 1.00Å | |
OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C18 | N5 | C19 | 118.6° | 120.0° |
C18 | N5 | C17 | 116.3° | 120.0° |
N5 | C18 | H6 | 109.5° | 109.5° |
N5 | C18 | H7 | 109.5° | 109.5° |
N5 | C18 | H8 | 109.5° | 109.5° |
C19 | N5 | C17 | 125.1° | 120.0° |
N5 | C19 | H9 | 109.5° | 109.5° |
N5 | C19 | H10 | 109.5° | 109.4° |
N5 | C19 | H11 | 109.4° | 109.5° |
N5 | C17 | O5 | 120.1° | 120.0° |
N5 | C17 | C16 | 123.0° | 120.0° |
N4 | C16 | C17 | 110.7° | 109.5° |
N4 | C16 | C20 | 116.5° | 109.5° |
C16 | N4 | H27 | 109.5° | 111.0° |
C16 | N4 | H3 | 109.4° | 111.0° |
N4 | C16 | H5 | 103.6° | 109.5° |
O5 | C17 | C16 | 116.7° | 120.0° |
C17 | C16 | C20 | 117.1° | 109.5° |
C17 | C16 | H5 | 104.1° | 109.5° |
C16 | C20 | C21 | 115.4° | 109.5° |
C20 | C16 | H5 | 102.8° | 109.4° |
C16 | C20 | H12 | 108.0° | 109.5° |
C16 | C20 | H13 | 108.0° | 109.4° |
C20 | C21 | C22 | 110.2° | 109.5° |
C21 | C20 | H12 | 108.0° | 109.5° |
C21 | C20 | H13 | 107.9° | 109.4° |
C20 | C21 | H14 | 109.3° | 109.6° |
C20 | C21 | H15 | 109.3° | 109.4° |
C21 | C22 | C23 | 110.7° | 109.5° |
C22 | C21 | H14 | 109.3° | 109.5° |
C22 | C21 | H15 | 109.3° | 109.4° |
C21 | C22 | H16 | 109.2° | 109.5° |
C21 | C22 | H17 | 109.2° | 109.4° |
CD | CG | C23 | 110.7° | 109.5° |
CG | CD | CB | 111.6° | 109.5° |
CD | CG | H20 | 109.2° | 109.6° |
CD | CG | H21 | 109.2° | 109.4° |
CG | CD | H22 | 108.9° | 109.5° |
CG | CD | H23 | 108.9° | 109.4° |
CG | C23 | C22 | 109.5° | 109.5° |
CG | C23 | H18 | 109.5° | 109.5° |
CG | C23 | H19 | 109.5° | 109.4° |
C23 | CG | H20 | 109.2° | 109.5° |
C23 | CG | H21 | 109.2° | 109.4° |
CD | CB | CA | 108.1° | 109.5° |
CB | CD | H22 | 108.9° | 109.5° |
CB | CD | H23 | 108.9° | 109.4° |
CD | CB | H24 | 109.8° | 109.5° |
CD | CB | H25 | 109.8° | 109.4° |
C23 | C22 | H16 | 109.1° | 109.5° |
C23 | C22 | H17 | 109.2° | 109.4° |
C22 | C23 | H18 | 109.5° | 109.5° |
C22 | C23 | H19 | 109.5° | 109.4° |
CA | C | O | 120.7° | 120.1° |
C | CA | CB | 110.0° | 109.4° |
C | CA | N | 106.3° | 109.4° |
CA | C | OXT | 119.6° | 120.0° |
C | CA | HA | 111.0° | 109.5° |
O | C | OXT | 119.7° | 120.0° |
CB | CA | N | 110.5° | 109.5° |
CA | CB | H24 | 109.8° | 109.5° |
CA | CB | H25 | 109.8° | 109.5° |
CB | CA | HA | 109.1° | 109.4° |
N | CA | HA | 109.9° | 109.5° |
CA | N | H | 109.5° | 111.0° |
CA | N | H2 | 109.5° | 111.0° |
C | OXT | HXT | 109.5° | 117.0° |
H27 | N4 | H3 | 109.5° | 110.9° |
H6 | C18 | H7 | 109.5° | 109.5° |
H6 | C18 | H8 | 109.4° | 109.4° |
H7 | C18 | H8 | 109.5° | 109.5° |
H9 | C19 | H10 | 109.5° | 109.5° |
H9 | C19 | H11 | 109.5° | 109.5° |
H10 | C19 | H11 | 109.5° | 109.4° |
H12 | C20 | H13 | 109.5° | 109.4° |
H14 | C21 | H15 | 109.5° | 109.4° |
H16 | C22 | H17 | 109.5° | 109.4° |
H18 | C23 | H19 | 109.5° | 109.4° |
H20 | CG | H21 | 109.5° | 109.4° |
H22 | CD | H23 | 109.5° | 109.4° |
H24 | CB | H25 | 109.5° | 109.5° |
H | N | H2 | 109.4° | 111.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C18 | N5 | C19 | C17 | 178.6° | 180.0° |
C18 | N5 | C17 | O5 | 2.3° | 0.0° |
C18 | N5 | C17 | C16 | 176.9° | 180.0° |
N5 | C18 | H6 | H7 | 120.0° | 120.0° |
N5 | C18 | H6 | H8 | 120.0° | 120.0° |
N5 | C18 | H7 | H8 | 120.0° | 120.0° |
C18 | N5 | C19 | H9 | 180.0° | 120.0° |
C18 | N5 | C19 | H10 | 60.0° | 0.0° |
C18 | N5 | C19 | H11 | 60.0° | 120.0° |
C19 | N5 | C17 | O5 | 179.0° | 180.0° |
C19 | N5 | C17 | C16 | 4.4° | 0.0° |
C19 | N5 | C18 | H6 | 180.0° | 90.0° |
C19 | N5 | C18 | H7 | 60.0° | 30.0° |
C19 | N5 | C18 | H8 | 60.0° | 150.0° |
N5 | C19 | H9 | H10 | 120.0° | 120.0° |
N5 | C19 | H9 | H11 | 120.0° | 120.1° |
N5 | C19 | H10 | H11 | 120.0° | 120.0° |
N5 | C17 | C16 | N4 | 48.0° | 160.0° |
N5 | C17 | O5 | C16 | 174.9° | 180.0° |
N5 | C17 | C16 | C20 | 88.7° | 80.0° |
N5 | C17 | C16 | H5 | 158.7° | 39.9° |
C17 | N5 | C18 | H6 | 1.2° | 90.0° |
C17 | N5 | C18 | H7 | 121.2° | 150.0° |
C17 | N5 | C18 | H8 | 118.7° | 30.0° |
C17 | N5 | C19 | H9 | 1.4° | 60.0° |
C17 | N5 | C19 | H10 | 118.7° | 180.0° |
C17 | N5 | C19 | H11 | 121.4° | 60.0° |
N4 | C16 | C17 | O5 | 126.7° | 20.0° |
N4 | C16 | C17 | C20 | 136.7° | 120.1° |
N4 | C16 | C17 | H5 | 110.7° | 120.0° |
N4 | C16 | C20 | H5 | 112.4° | 120.0° |
N4 | C16 | C20 | C21 | 48.3° | 64.9° |
C16 | N4 | H27 | H3 | 120.0° | 123.9° |
N4 | C16 | C20 | H12 | 72.5° | 175.0° |
N4 | C16 | C20 | H13 | 169.2° | 55.0° |
O5 | C17 | C16 | C20 | 96.5° | 100.0° |
O5 | C17 | C16 | H5 | 16.0° | 140.0° |
C17 | C16 | C20 | H5 | 113.3° | 120.0° |
C17 | C16 | C20 | C21 | 85.9° | 175.0° |
C17 | C16 | N4 | H27 | 180.0° | 60.0° |
C17 | C16 | N4 | H3 | 60.0° | 63.9° |
C17 | C16 | C20 | H12 | 153.2° | 54.9° |
C17 | C16 | C20 | H13 | 34.9° | 65.0° |
C16 | C20 | C21 | H12 | 120.8° | 120.1° |
C16 | C20 | C21 | H13 | 120.9° | 119.9° |
C16 | C20 | C21 | C22 | 172.2° | NaN° |
C20 | C16 | N4 | H27 | 43.0° | 60.1° |
C20 | C16 | N4 | H3 | 77.0° | 176.0° |
C16 | C20 | H12 | H13 | 117.4° | 120.0° |
C16 | C20 | C21 | H14 | 67.7° | 59.9° |
C16 | C20 | C21 | H15 | 52.1° | 60.1° |
C20 | C21 | C22 | H14 | 120.1° | 120.1° |
C20 | C21 | C22 | H15 | 120.1° | 119.9° |
C20 | C21 | C22 | C23 | 66.9° | 180.0° |
C21 | C20 | C16 | H5 | 160.8° | 55.0° |
C21 | C20 | H12 | H13 | 117.3° | 120.0° |
C20 | C21 | H14 | H15 | 119.7° | 120.0° |
C20 | C21 | C22 | H16 | 53.2° | 59.9° |
C20 | C21 | C22 | H17 | 172.9° | 60.1° |
C21 | C22 | C23 | CG | 59.7° | 180.0° |
C21 | C22 | C23 | H16 | 120.2° | 120.1° |
C21 | C22 | C23 | H17 | 120.2° | 119.9° |
C22 | C21 | C20 | H12 | 51.3° | 59.9° |
C22 | C21 | C20 | H13 | 66.9° | 60.1° |
C22 | C21 | H14 | H15 | 119.7° | 119.9° |
C21 | C22 | H16 | H17 | 119.5° | 120.0° |
C21 | C22 | C23 | H18 | 179.7° | 59.9° |
C21 | C22 | C23 | H19 | 60.3° | 60.1° |
CD | CG | C23 | H20 | 120.2° | 120.1° |
CD | CG | C23 | H21 | 120.2° | 119.9° |
CG | CD | CB | H22 | 120.3° | 120.1° |
CG | CD | CB | H23 | 120.3° | 119.9° |
CD | CG | C23 | C22 | 174.0° | 180.0° |
CG | CD | CB | CA | 121.2° | 180.0° |
CD | CG | C23 | H18 | 66.0° | 59.9° |
CD | CG | C23 | H19 | 54.0° | 60.1° |
CD | CG | H20 | H21 | 119.4° | 120.0° |
CG | CD | H22 | H23 | 119.0° | 120.0° |
CG | CD | CB | H24 | 119.0° | 60.0° |
CG | CD | CB | H25 | 1.4° | 60.1° |
C23 | CG | CD | CB | 83.3° | 180.0° |
CG | C23 | C22 | H18 | 120.0° | 120.1° |
CG | C23 | C22 | H19 | 120.0° | 119.9° |
CG | C23 | C22 | H16 | 179.9° | 59.9° |
CG | C23 | C22 | H17 | 60.5° | 60.1° |
CG | C23 | H18 | H19 | 120.0° | 120.0° |
C23 | CG | H20 | H21 | 119.5° | 119.9° |
C23 | CG | CD | H22 | 156.3° | 59.9° |
C23 | CG | CD | H23 | 37.0° | 60.1° |
CD | CB | CA | C | 59.7° | 175.1° |
CD | CB | CA | H24 | 119.8° | 120.0° |
CD | CB | CA | H25 | 119.8° | 119.9° |
CD | CB | CA | N | 176.7° | 65.0° |
CB | CD | CG | H20 | 156.5° | 59.9° |
CB | CD | CG | H21 | 36.8° | 60.1° |
CB | CD | H22 | H23 | 119.0° | 120.0° |
CD | CB | H24 | H25 | 120.7° | 120.0° |
CD | CB | CA | HA | 62.3° | 55.1° |
C23 | C22 | C21 | H14 | 173.0° | 59.9° |
C23 | C22 | C21 | H15 | 53.2° | 60.1° |
C23 | C22 | H16 | H17 | 119.4° | 120.0° |
C22 | C23 | H18 | H19 | 120.0° | 120.0° |
C22 | C23 | CG | H20 | 53.8° | 59.9° |
C22 | C23 | CG | H21 | 65.8° | 60.1° |
CA | C | O | OXT | 180.0° | 179.7° |
C | CA | CB | N | 117.0° | 120.0° |
C | CA | CB | HA | 122.0° | 120.0° |
C | CA | N | HA | 120.2° | 120.1° |
C | CA | CB | H24 | 60.1° | 55.0° |
C | CA | CB | H25 | 179.5° | 65.0° |
C | CA | N | H | 180.0° | 60.0° |
C | CA | N | H2 | 60.0° | 176.1° |
CA | C | OXT | HXT | 180.0° | 180.0° |
O | C | CA | CB | 47.7° | 100.0° |
O | C | CA | N | 72.0° | 20.0° |
O | C | CA | HA | 168.6° | 140.0° |
O | C | OXT | HXT | 0.0° | 0.3° |
CB | CA | N | HA | 120.5° | 120.0° |
CB | CA | C | OXT | 132.3° | 79.7° |
CA | CB | CD | H22 | 0.8° | 59.9° |
CA | CB | CD | H23 | 118.5° | 60.0° |
CA | CB | H24 | H25 | 120.6° | 120.0° |
CB | CA | N | H | 60.7° | 60.0° |
CB | CA | N | H2 | 179.4° | 64.0° |
N | CA | C | OXT | 108.0° | 160.3° |
N | CA | CB | H24 | 56.9° | 175.0° |
N | CA | CB | H25 | 63.5° | 54.9° |
CA | N | H | H2 | 120.0° | 123.9° |
OXT | C | CA | HA | 11.4° | 40.2° |
H27 | N4 | C16 | H5 | 69.0° | 180.0° |
H3 | N4 | C16 | H5 | 171.0° | 56.1° |
H5 | C16 | C20 | H12 | 39.9° | 65.0° |
H5 | C16 | C20 | H13 | 78.4° | 175.0° |
H6 | C18 | H7 | H8 | 120.0° | 119.9° |
H9 | C19 | H10 | H11 | 120.0° | 120.0° |
H12 | C20 | C21 | H14 | 171.4° | 180.0° |
H12 | C20 | C21 | H15 | 68.8° | 60.0° |
H13 | C20 | C21 | H14 | 53.2° | 60.0° |
H13 | C20 | C21 | H15 | 173.0° | 180.0° |
H14 | C21 | C22 | H16 | 66.9° | 180.0° |
H14 | C21 | C22 | H17 | 52.8° | 60.1° |
H15 | C21 | C22 | H16 | 173.4° | 60.0° |
H15 | C21 | C22 | H17 | 67.0° | 180.0° |
H16 | C22 | C23 | H18 | 60.1° | 180.0° |
H16 | C22 | C23 | H19 | 59.9° | 60.0° |
H17 | C22 | C23 | H18 | 59.5° | 60.0° |
H17 | C22 | C23 | H19 | 179.5° | 180.0° |
H18 | C23 | CG | H20 | 173.8° | 180.0° |
H18 | C23 | CG | H21 | 54.2° | 60.0° |
H19 | C23 | CG | H20 | 66.2° | 60.1° |
H19 | C23 | CG | H21 | 174.2° | 180.0° |
H20 | CG | CD | H22 | 36.1° | 180.0° |
H20 | CG | CD | H23 | 83.2° | 60.0° |
H21 | CG | CD | H22 | 83.5° | 60.0° |
H21 | CG | CD | H23 | 157.2° | 180.0° |
H22 | CD | CB | H24 | 120.6° | 180.0° |
H22 | CD | CB | H25 | 118.9° | 60.0° |
H23 | CD | CB | H24 | 1.3° | 60.0° |
H23 | CD | CB | H25 | 121.7° | 180.0° |
H24 | CB | CA | HA | 177.9° | 65.0° |
H25 | CB | CA | HA | 57.4° | 175.0° |
HA | CA | N | H | 59.8° | 180.0° |
HA | CA | N | H2 | 60.2° | 56.0° |