B8H
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C5' | C4' | sing | 1.53Å | 1.50Å | |
| C5' | O5' | sing | 1.43Å | 1.42Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C4' | C3' | sing | 1.55Å | 1.51Å | |
| OP2 | P | doub | 1.48Å | 1.50Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| O4' | C1' | sing | 1.44Å | 1.41Å | |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| P | OP1 | sing | 1.61Å | 1.50Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | C5 | sing | 1.51Å | 1.49Å | |
| C5 | C6 | doub | 1.35Å | 1.38Å | |
| C5 | C4 | sing | 1.42Å | 1.47Å | |
| O4 | C4 | doub | 1.22Å | 1.25Å | |
| C6 | N1 | sing | 1.37Å | 1.32Å | |
| C4 | N3 | sing | 1.35Å | 1.33Å | |
| N1 | CN1 | sing | 1.47Å | 1.46Å | |
| N1 | C2 | sing | 1.35Å | 1.40Å | |
| N3 | C2 | sing | 1.35Å | 1.33Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| P | O1 | sing | 1.61Å | 1.60Å | |
| C1' | H1 | sing | 1.09Å | 1.10Å | |
| C2' | H2 | sing | 1.09Å | 1.10Å | |
| C3' | H3 | sing | 1.09Å | 1.10Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C5' | H6 | sing | 1.09Å | 1.10Å | |
| C6 | H7 | sing | 1.08Å | 1.08Å | |
| CN1 | H8 | sing | 1.09Å | 1.10Å | |
| CN1 | H9 | sing | 1.09Å | 1.10Å | |
| CN1 | H10 | sing | 1.09Å | 1.10Å | |
| N3 | H11 | sing | 0.97Å | 1.00Å | |
| O2' | H12 | sing | 0.97Å | 0.95Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| OP1 | H14 | sing | 0.97Å | 0.95Å | |
| O1 | H15 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4' | C5' | O5' | 111.8° | 109.5° |
| C5' | C4' | O4' | 110.0° | 110.6° |
| C5' | C4' | C3' | 116.0° | 110.6° |
| C5' | C4' | H4 | 108.9° | 110.7° |
| C4' | C5' | H5 | 108.9° | 109.5° |
| C4' | C5' | H6 | 108.9° | 109.5° |
| C5' | O5' | P | 119.9° | 123.0° |
| O5' | C5' | H5 | 108.9° | 109.5° |
| O5' | C5' | H6 | 108.9° | 109.4° |
| O4' | C4' | C3' | 103.5° | 103.5° |
| C4' | O4' | C1' | 109.7° | 107.0° |
| O4' | C4' | H4 | 109.6° | 110.7° |
| C4' | C3' | O3' | 114.0° | 111.0° |
| C4' | C3' | C2' | 102.0° | 102.1° |
| C4' | C3' | H3 | 108.1° | 110.9° |
| C3' | C4' | H4 | 108.7° | 110.6° |
| OP2 | P | O5' | 106.3° | 109.4° |
| OP2 | P | OP1 | 119.4° | 109.5° |
| OP2 | P | O1 | 107.3° | 109.5° |
| O2' | C2' | C3' | 110.3° | 110.6° |
| O2' | C2' | C1' | 108.3° | 110.5° |
| O2' | C2' | H2 | 113.3° | 110.4° |
| C2' | O2' | H12 | 109.5° | 114.1° |
| O4' | C1' | C2' | 107.2° | 107.3° |
| O4' | C1' | C5 | 110.6° | 109.9° |
| O4' | C1' | H1 | 110.3° | 110.0° |
| O3' | C3' | C2' | 115.0° | 110.9° |
| O3' | C3' | H3 | 109.4° | 110.8° |
| C3' | O3' | H13 | 109.5° | 114.0° |
| O5' | P | OP1 | 109.0° | 109.5° |
| O5' | P | O1 | 104.0° | 109.5° |
| OP1 | P | O1 | 109.7° | 109.5° |
| P | OP1 | H14 | 109.5° | 114.0° |
| C3' | C2' | C1' | 100.8° | 104.2° |
| C3' | C2' | H2 | 111.7° | 110.5° |
| C2' | C3' | H3 | 108.0° | 110.9° |
| C2' | C1' | C5 | 110.9° | 109.9° |
| C2' | C1' | H1 | 108.7° | 109.9° |
| C1' | C2' | H2 | 111.6° | 110.5° |
| C1' | C5 | C6 | 122.9° | 120.5° |
| C1' | C5 | C4 | 119.9° | 120.4° |
| C5 | C1' | H1 | 109.2° | 109.9° |
| C6 | C5 | C4 | 117.2° | 119.1° |
| C5 | C6 | N1 | 120.9° | 119.7° |
| C5 | C6 | H7 | 119.5° | 120.2° |
| C5 | C4 | O4 | 119.7° | 120.3° |
| C5 | C4 | N3 | 119.5° | 119.4° |
| O4 | C4 | N3 | 120.7° | 120.3° |
| C6 | N1 | CN1 | 118.0° | 119.7° |
| C6 | N1 | C2 | 120.1° | 120.6° |
| N1 | C6 | H7 | 119.5° | 120.1° |
| C4 | N3 | C2 | 120.8° | 120.2° |
| C4 | N3 | H11 | 119.6° | 119.9° |
| CN1 | N1 | C2 | 121.9° | 119.7° |
| N1 | CN1 | H8 | 109.5° | 109.5° |
| N1 | CN1 | H9 | 109.5° | 109.4° |
| N1 | CN1 | H10 | 109.4° | 109.5° |
| N1 | C2 | N3 | 121.4° | 121.0° |
| N1 | C2 | O2 | 120.1° | 119.5° |
| N3 | C2 | O2 | 118.6° | 119.5° |
| C2 | N3 | H11 | 119.6° | 119.9° |
| P | O1 | H15 | 109.5° | 114.0° |
| H5 | C5' | H6 | 109.5° | 109.5° |
| H8 | CN1 | H9 | 109.5° | 109.4° |
| H8 | CN1 | H10 | 109.4° | 109.6° |
| H9 | CN1 | H10 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4' | C5' | O5' | H5 | 120.3° | 120.0° |
| C4' | C5' | O5' | H6 | 120.3° | 120.0° |
| C5' | C4' | O4' | C3' | 124.5° | 118.5° |
| C5' | C4' | O4' | H4 | 119.6° | 123.0° |
| C5' | C4' | C3' | H4 | 123.0° | 123.0° |
| C5' | C4' | O4' | C1' | 147.0° | 158.6° |
| C5' | C4' | C3' | O3' | 76.5° | 86.3° |
| C4' | C5' | O5' | P | 152.8° | 180.0° |
| C5' | C4' | C3' | C2' | 158.9° | 155.5° |
| C5' | C4' | C3' | H3 | 45.2° | 37.3° |
| C4' | C5' | H5 | H6 | 118.9° | 120.0° |
| O5' | C5' | C4' | O4' | 49.9° | 66.5° |
| O5' | C5' | C4' | C3' | 67.0° | 179.5° |
| C5' | O5' | P | OP2 | 37.6° | 55.0° |
| C5' | O5' | P | OP1 | 167.6° | 175.0° |
| C5' | O5' | P | O1 | 75.4° | 65.0° |
| O5' | C5' | C4' | H4 | 170.0° | 56.5° |
| O5' | C5' | H5 | H6 | 118.9° | 120.0° |
| O4' | C4' | C3' | H4 | 116.5° | 118.5° |
| O4' | C4' | C3' | O3' | 162.9° | 155.3° |
| O4' | C4' | C3' | C2' | 38.4° | 37.1° |
| C4' | O4' | C1' | C2' | 2.8° | 26.5° |
| C4' | O4' | C1' | C5 | 118.2° | 146.0° |
| C4' | O4' | C1' | H1 | 120.9° | 93.0° |
| O4' | C4' | C3' | H3 | 75.3° | 81.2° |
| O4' | C4' | C5' | H5 | 70.4° | 173.5° |
| O4' | C4' | C5' | H6 | 170.3° | 53.5° |
| C4' | C3' | C2' | O2' | 75.4° | 97.9° |
| C3' | C4' | O4' | C1' | 22.5° | 40.1° |
| C4' | C3' | O3' | C2' | 117.2° | 112.7° |
| C4' | C3' | O3' | H3 | 121.1° | 123.6° |
| C4' | C3' | C2' | H3 | 113.7° | 118.2° |
| C4' | C3' | C2' | C1' | 39.0° | 20.9° |
| C4' | C3' | C2' | H2 | 157.6° | 139.5° |
| C3' | C4' | C5' | H5 | 172.6° | 59.5° |
| C3' | C4' | C5' | H6 | 53.3° | 60.5° |
| C4' | C3' | O3' | H13 | 180.0° | 174.2° |
| OP2 | P | O5' | OP1 | 130.0° | 120.0° |
| OP2 | P | O5' | O1 | 113.1° | 120.0° |
| OP2 | P | OP1 | O1 | 124.3° | 120.0° |
| OP2 | P | OP1 | H14 | 0.0° | 60.1° |
| OP2 | P | O1 | H15 | 0.0° | 180.0° |
| O2' | C2' | C1' | O4' | 89.3° | 120.9° |
| O2' | C2' | C3' | O3' | 48.5° | 20.4° |
| O2' | C2' | C3' | C1' | 114.3° | 118.8° |
| O2' | C2' | C3' | H2 | 127.0° | 122.6° |
| O2' | C2' | C1' | H2 | 125.5° | 122.5° |
| O2' | C2' | C1' | C5 | 149.9° | 119.7° |
| O2' | C2' | C1' | H1 | 29.9° | 1.3° |
| O2' | C2' | C3' | H3 | 170.9° | 143.9° |
| O4' | C1' | C2' | C3' | 26.5° | 2.0° |
| O4' | C1' | C2' | C5 | 120.7° | 119.4° |
| O4' | C1' | C2' | H1 | 119.2° | 119.6° |
| O4' | C1' | C5 | H1 | 121.6° | 121.2° |
| O4' | C1' | C5 | C6 | 22.2° | 127.2° |
| O4' | C1' | C5 | C4 | 157.6° | 52.8° |
| O4' | C1' | C2' | H2 | 145.2° | 116.6° |
| C1' | O4' | C4' | H4 | 93.4° | 78.4° |
| O3' | C3' | C2' | H3 | 122.4° | 123.6° |
| O3' | C3' | C2' | C1' | 162.8° | 139.2° |
| O3' | C3' | C2' | H2 | 78.5° | 102.2° |
| O3' | C3' | C4' | H4 | 46.5° | 36.7° |
| O5' | P | OP1 | O1 | 113.3° | 120.0° |
| P | O5' | C5' | H5 | 32.4° | 60.0° |
| P | O5' | C5' | H6 | 86.9° | 60.0° |
| O5' | P | OP1 | H14 | 122.4° | 180.0° |
| O5' | P | O1 | H15 | 112.4° | 60.0° |
| OP1 | P | O1 | H15 | 131.1° | 60.0° |
| C3' | C2' | C1' | H2 | 118.7° | 118.6° |
| C3' | C2' | C1' | C5 | 94.2° | 121.5° |
| C3' | C2' | C1' | H1 | 145.7° | 117.5° |
| C2' | C3' | C4' | H4 | 78.0° | 81.5° |
| C3' | C2' | O2' | H12 | 180.0° | 65.1° |
| C2' | C3' | O3' | H13 | 62.8° | 61.4° |
| C2' | C1' | C5 | H1 | 119.7° | 121.0° |
| C2' | C1' | C5 | C6 | 96.5° | 115.0° |
| C2' | C1' | C5 | C4 | 83.8° | 65.0° |
| C1' | C2' | C3' | H3 | 74.7° | 97.3° |
| C1' | C2' | O2' | H12 | 70.5° | 180.0° |
| C1' | C5 | C6 | C4 | 179.7° | 180.0° |
| C1' | C5 | C4 | O4 | 0.2° | 0.1° |
| C1' | C5 | C6 | N1 | 179.0° | 180.0° |
| C1' | C5 | C4 | N3 | 179.9° | 179.8° |
| C5 | C1' | C2' | H2 | 24.5° | 2.8° |
| C1' | C5 | C6 | H7 | 1.0° | 0.1° |
| C6 | C5 | C4 | O4 | 179.5° | 180.0° |
| C5 | C6 | N1 | H7 | 180.0° | 179.9° |
| C6 | C5 | C4 | N3 | 0.2° | 0.2° |
| C5 | C6 | N1 | CN1 | 179.3° | 179.9° |
| C5 | C6 | N1 | C2 | 1.8° | 0.2° |
| C6 | C5 | C1' | H1 | 143.7° | 6.0° |
| C5 | C4 | O4 | N3 | 179.6° | 179.8° |
| C4 | C5 | C6 | N1 | 1.3° | 0.0° |
| C5 | C4 | N3 | C2 | 0.4° | 0.2° |
| C4 | C5 | C1' | H1 | 36.0° | 174.0° |
| C4 | C5 | C6 | H7 | 178.7° | 179.9° |
| C5 | C4 | N3 | H11 | 179.6° | 180.0° |
| O4 | C4 | N3 | C2 | 179.9° | 180.0° |
| O4 | C4 | N3 | H11 | 0.1° | 0.2° |
| C6 | N1 | CN1 | C2 | 178.9° | 179.7° |
| C6 | N1 | C2 | N3 | 1.2° | 0.2° |
| C6 | N1 | C2 | O2 | 179.5° | 179.8° |
| C6 | N1 | CN1 | H8 | 180.0° | 179.8° |
| C6 | N1 | CN1 | H9 | 60.0° | 60.3° |
| C6 | N1 | CN1 | H10 | 60.0° | 59.7° |
| C4 | N3 | C2 | N1 | 0.1° | 0.0° |
| C4 | N3 | C2 | H11 | 180.0° | 179.8° |
| C4 | N3 | C2 | O2 | 179.4° | 180.0° |
| CN1 | N1 | C2 | N3 | 179.9° | 180.0° |
| CN1 | N1 | C2 | O2 | 0.6° | 0.1° |
| CN1 | N1 | C6 | H7 | 0.7° | 0.0° |
| N1 | CN1 | H8 | H9 | 120.0° | 119.9° |
| N1 | CN1 | H8 | H10 | 120.0° | 120.1° |
| N1 | CN1 | H9 | H10 | 120.0° | 120.0° |
| N1 | C2 | N3 | O2 | 179.3° | 180.0° |
| C2 | N1 | C6 | H7 | 178.2° | 179.7° |
| C2 | N1 | CN1 | H8 | 1.1° | 0.1° |
| C2 | N1 | CN1 | H9 | 118.9° | 120.0° |
| C2 | N1 | CN1 | H10 | 121.1° | 120.0° |
| N1 | C2 | N3 | H11 | 179.9° | 179.8° |
| O2 | C2 | N3 | H11 | 0.6° | 0.2° |
| O1 | P | OP1 | H14 | 124.4° | 60.0° |
| H1 | C1' | C2' | H2 | 95.6° | 123.8° |
| H2 | C2' | C3' | H3 | 43.9° | 21.4° |
| H2 | C2' | O2' | H12 | 53.9° | 57.5° |
| H3 | C3' | C4' | H4 | 168.3° | 160.3° |
| H3 | C3' | O3' | H13 | 58.9° | 62.2° |
| H4 | C4' | C5' | H5 | 49.6° | 63.5° |
| H4 | C4' | C5' | H6 | 69.7° | 176.5° |
| H8 | CN1 | H9 | H10 | 120.0° | 120.1° |
