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SummaryGeometryRelated PDB entries

B5T

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OADSABdoub1.42Å1.53Å
CAXCAYdoub1.38Å1.40ÅAromatic
CAXCAWsing1.38Å1.39ÅAromatic
CAJCAIdoub1.38Å1.40ÅAromatic
CAJCAEsing1.38Å1.40ÅAromatic
NAASABsing1.66Å1.62Å
CAYCATsing1.40Å1.40ÅAromatic
CAWNAVdoub1.32Å1.41ÅAromatic
CAICAHsing1.39Å1.40ÅAromatic
SABCAEsing1.76Å1.76Å
SABOACdoub1.42Å1.53Å
CAECAFdoub1.38Å1.40ÅAromatic
CATCAQsing1.48Å1.35Å
CATCAUdoub1.39Å1.40ÅAromatic
NAVCAUsing1.32Å1.41ÅAromatic
CAHCAKsing1.48Å1.40Å
CAHCAGdoub1.39Å1.40ÅAromatic
CASCAKdoub1.39Å1.40ÅAromatic
CASCARsing1.39Å1.35ÅAromatic
CAKCALsing1.40Å1.39ÅAromatic
CAQCARsing1.47Å1.34ÅAromatic
CAQCAPdoub1.35Å1.33ÅAromatic
CAFCAGsing1.38Å1.40ÅAromatic
CARCANdoub1.41Å1.35ÅAromatic
CAPNAOsing1.37Å1.33ÅAromatic
CALNAMdoub1.31Å1.40ÅAromatic
CANNAMsing1.33Å1.35ÅAromatic
CANNAOsing1.37Å1.33ÅAromatic
CAGH1sing1.08Å1.08Å
CAFH2sing1.08Å1.08Å
NAAH3sing0.97Å1.00Å
NAAH4sing0.97Å1.00Å
CAJH5sing1.08Å1.08Å
CAIH6sing1.08Å1.08Å
CASH7sing1.08Å1.08Å
CALH8sing1.08Å1.08Å
NAOH9sing0.97Å1.00Å
CAPH10sing1.08Å1.08Å
CAYH11sing1.08Å1.08Å
CAXH12sing1.08Å1.08Å
CAWH13sing1.08Å1.08Å
CAUH14sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OADSABNAA109.8°106.4°
OADSABCAE110.4°106.4°
OADSABOAC108.8°123.1°
CAYCAXCAW120.3°119.3°
CAXCAYCAT121.2°118.3°
CAXCAYH11119.4°120.9°
CAYCAXH12119.9°120.3°
CAXCAWNAV119.3°121.0°
CAWCAXH12119.8°120.4°
CAXCAWH13120.3°119.5°
CAICAJCAE120.2°120.1°
CAJCAICAH120.6°119.9°
CAICAJH5119.9°120.0°
CAJCAIH6119.7°120.0°
CAJCAESAB121.2°119.9°
CAJCAECAF119.5°120.2°
CAECAJH5119.9°119.9°
NAASABCAE109.4°107.2°
NAASABOAC109.2°106.5°
SABNAAH3109.5°120.0°
SABNAAH4109.5°119.9°
CAYCATCAQ121.1°120.5°
CAYCATCAU118.6°118.9°
CATCAYH11119.4°120.8°
CAWNAVCAU120.2°121.9°
NAVCAWH13120.3°119.5°
CAICAHCAK120.5°120.1°
CAICAHCAG118.7°119.8°
CAHCAIH6119.7°120.1°
CAESABOAC109.2°106.4°
SABCAECAF119.3°119.9°
CAECAFCAG120.2°120.1°
CAECAFH2119.9°119.9°
CAQCATCAU120.3°120.6°
CATCAQCAR128.2°126.7°
CATCAQCAP122.6°126.7°
CATCAUNAV120.5°120.6°
CATCAUH14119.7°119.7°
NAVCAUH14119.7°119.7°
CAKCAHCAG120.8°120.1°
CAHCAKCAS122.5°120.5°
CAHCAKCAL119.8°120.4°
CAHCAGCAF120.7°119.8°
CAHCAGH1119.6°120.1°
CAKCASCAR121.3°118.0°
CASCAKCAL117.7°119.1°
CAKCASH7119.4°121.0°
CASCARCAQ133.6°134.2°
CASCARCAN120.4°119.7°
CARCASH7119.3°121.1°
CAKCALNAM119.2°121.4°
CAKCALH8120.4°119.3°
CARCAQCAP109.2°106.6°
CAQCARCAN106.0°106.1°
CAQCAPNAO107.7°109.7°
CAQCAPH10126.2°125.2°
CAFCAGH1119.7°120.1°
CAGCAFH2119.9°120.0°
CARCANNAM121.3°120.0°
CARCANNAO108.8°107.2°
CAPNAOCAN108.3°110.4°
CAPNAOH9125.9°124.8°
NAOCAPH10126.1°125.1°
CALNAMCAN120.2°121.9°
NAMCALH8120.4°119.3°
NAMCANNAO129.9°132.8°
CANNAOH9125.9°124.8°
H3NAAH4109.5°120.1°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OADSABCAECAJ15.6°156.5°
OADSABNAACAE121.3°113.5°
OADSABNAAOAC119.3°132.9°
OADSABCAEOAC119.6°132.9°
OADSABCAECAF164.3°23.5°
OADSABNAAH3180.0°113.6°
OADSABNAAH460.0°66.5°
CAYCAXCAWH12180.0°179.9°
CAXCAYCATH11180.0°179.9°
CAYCAXCAWNAV0.1°0.0°
CAXCAYCATCAQ179.1°179.9°
CAXCAYCATCAU1.0°0.2°
CAYCAXCAWH13179.9°179.9°
CAWCAXCAYCAT0.5°0.1°
CAXCAWNAVH13180.0°180.0°
CAXCAWNAVCAU0.2°0.2°
CAWCAXCAYH11179.5°180.0°
CAICAJCAEH5180.0°179.7°
CAJCAICAHH6180.0°179.7°
CAICAJCAESAB180.0°180.0°
CAICAJCAECAF0.0°0.1°
CAJCAICAHCAK179.7°180.0°
CAJCAICAHCAG0.7°0.5°
CAJCAESABNAA105.3°90.0°
CAECAJCAICAH0.4°0.3°
CAJCAESABCAF179.9°179.9°
CAJCAESABOAC135.2°23.6°
CAJCAECAFCAG0.1°0.0°
CAJCAECAFH2179.9°179.9°
CAECAJCAIH6179.6°180.0°
NAASABCAEOAC119.5°113.6°
NAASABCAECAF74.8°90.0°
SABNAAH3H4120.1°179.9°
CAYCATCAQCAU178.2°179.8°
CAYCATCAUNAV0.9°0.4°
CAYCATCAQCAR48.4°130.3°
CAYCATCAQCAP130.7°49.9°
CATCAYCAXH12179.5°180.0°
CAYCATCAUH14179.1°179.7°
CAWNAVCAUCAT0.3°0.5°
NAVCAWCAXH12179.9°180.0°
CAWNAVCAUH14179.7°179.7°
CAICAHCAKCAG179.0°179.5°
CAICAHCAKCAS48.2°179.8°
CAICAHCAKCAL131.4°0.0°
CAICAHCAGCAF0.6°0.5°
CAICAHCAGH1179.4°179.7°
CAHCAICAJH5179.6°180.0°
SABCAECAFCAG179.9°180.0°
SABCAECAFH20.2°0.0°
CAESABNAAH358.8°0.0°
CAESABNAAH461.3°179.9°
SABCAECAJH50.0°0.3°
OACSABCAECAF44.7°156.4°
OACSABNAAH360.7°113.5°
OACSABNAAH4179.2°66.4°
CAECAFCAGCAH0.2°0.3°
CAECAFCAGH2180.0°180.0°
CAECAFCAGH1179.8°180.0°
CAFCAECAJH5180.0°179.7°
CAQCATCAUNAV179.1°179.8°
CATCAQCARCAS0.6°0.2°
CATCAQCARCAP179.2°179.9°
CATCAQCARCAN179.4°179.9°
CATCAQCAPNAO179.6°179.9°
CATCAQCAPH100.4°0.2°
CAQCATCAYH110.8°0.0°
CAQCATCAUH140.9°0.0°
CATCAUNAVH14180.0°179.8°
CAUCATCAQCAR133.5°49.9°
CAUCATCAQCAP47.5°129.9°
CAUCATCAYH11179.0°179.8°
CAUNAVCAWH13179.8°179.8°
CAHCAKCASCAL179.7°179.7°
CAHCAKCASCAR179.7°180.0°
CAKCAHCAGCAF179.6°180.0°
CAHCAKCALNAM179.9°180.0°
CAKCAHCAGH10.4°0.2°
CAKCAHCAIH60.4°0.2°
CAHCAKCASH70.3°0.0°
CAHCAKCALH80.1°0.0°
CAGCAHCAKCAS132.8°0.2°
CAGCAHCAKCAL47.5°179.5°
CAHCAGCAFH1180.0°179.8°
CAHCAGCAFH2179.8°179.7°
CAGCAHCAIH6179.3°179.8°
CAKCASCARH7180.0°180.0°
CAKCASCARCAQ180.0°179.9°
CAKCASCARCAN0.1°0.0°
CASCAKCALNAM0.2°0.3°
CASCAKCALH8179.8°179.8°
CARCASCAKCAL0.1°0.3°
CASCARCAQCAN179.9°179.9°
CASCARCAQCAP179.8°180.0°
CASCARCANNAM0.0°0.3°
CASCARCANNAO180.0°180.0°
CAKCALNAMH8180.0°179.9°
CAKCALNAMCAN0.2°0.0°
CALCAKCASH7179.9°179.7°
CARCAQCAPNAO0.4°0.1°
CAQCARCANNAM180.0°179.7°
CAQCARCANNAO0.1°0.0°
CAQCARCASH70.0°0.1°
CARCAQCAPH10179.6°179.9°
CAPCAQCARCAN0.3°0.1°
CAQCAPNAOH10180.0°179.8°
CAQCAPNAOCAN0.3°0.1°
CAQCAPNAOH9179.7°180.0°
CARCANNAOCAP0.2°0.0°
CARCANNAMCAL0.1°0.3°
CARCANNAMNAO179.9°179.6°
CANCARCASH7179.9°180.0°
CARCANNAOH9179.9°180.0°
CAPNAOCANNAM179.8°179.7°
CAPNAOCANH9180.0°179.9°
CALNAMCANNAO179.8°179.9°
CANNAMCALH8179.8°179.9°
NAMCANNAOH90.2°0.4°
CANNAOCAPH10179.7°179.9°
H1CAGCAFH20.2°0.0°
H5CAJCAIH60.4°0.3°
H9NAOCAPH100.3°0.1°
H11CAYCAXH120.5°0.1°
H12CAXCAWH130.1°0.0°

248942

PDB entries from 2026-02-11

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