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SummaryGeometryRelated PDB entries

B24

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C2'C1'sing1.53Å1.52Å
C2'H2'sing1.09Å1.10Å
C2'H2'Asing1.09Å1.10Å
C2'H2'Bsing1.09Å1.10Å
C1'N1sing1.46Å1.47Å
C1'H1'sing1.09Å1.10Å
C1'H1'Asing1.09Å1.10Å
N1B2sing1.52Å1.50Å
N1C6sing1.36Å1.34Å
B2C3sing1.43Å1.49Å
C3C4doub1.36Å1.39Å
C3H3sing1.08Å1.08Å
C4C5sing1.39Å1.40Å
C4H4sing1.08Å1.08Å
C5C6doub1.35Å1.40Å
C5H5sing1.08Å1.08Å
C6H6sing1.08Å1.08Å
B2H10sing1.17Å1.20Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C1'C2'H2'109.5°109.5°
C1'C2'H2'A109.4°109.5°
C1'C2'H2'B109.5°109.5°
C2'C1'N1110.6°109.5°
C2'C1'H1'109.1°109.5°
C2'C1'H1'A108.9°109.4°
H2'C2'H2'A109.4°109.5°
H2'C2'H2'B109.5°109.4°
H2'AC2'H2'B109.5°109.5°
N1C1'H1'109.1°109.5°
N1C1'H1'A108.8°109.4°
C1'N1B2119.6°120.8°
C1'N1C6121.5°120.7°
H1'C1'H1'A110.4°109.5°
B2N1C6118.9°118.5°
N1B2C3118.6°117.8°
N1B2H10120.7°121.1°
N1C6C5121.3°120.7°
N1C6H6119.4°119.7°
B2C3C4117.9°119.0°
B2C3H3121.0°120.5°
C3B2H10120.7°121.1°
C4C3H3121.0°120.5°
C3C4C5120.3°121.5°
C3C4H4119.8°119.2°
C5C4H4119.9°119.3°
C4C5C6123.0°122.5°
C4C5H5118.5°118.8°
C6C5H5118.5°118.8°
C5C6H6119.4°119.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C1'C2'H2'H2'A120.0°120.0°
C1'C2'H2'H2'B120.0°120.0°
C1'C2'H2'AH2'B120.0°120.0°
C2'C1'N1H1'120.0°120.0°
C2'C1'N1H1'A119.5°120.0°
C2'C1'H1'H1'A119.6°120.0°
C2'C1'N1B277.1°105.0°
C2'C1'N1C6102.4°74.7°
H2'C2'H2'AH2'B120.0°119.9°
H2'C2'C1'N160.9°60.0°
H2'C2'C1'H1'179.1°180.0°
H2'C2'C1'H1'A58.6°60.0°
H2'AC2'C1'N1179.1°180.0°
H2'AC2'C1'H1'59.1°60.0°
H2'AC2'C1'H1'A61.4°60.0°
H2'BC2'C1'N159.1°60.0°
H2'BC2'C1'H1'60.9°60.1°
H2'BC2'C1'H1'A178.6°180.0°
N1C1'H1'H1'A119.5°120.0°
C1'N1B2C6179.6°179.7°
C1'N1B2C3179.7°180.0°
C1'N1C6C5179.4°179.8°
C1'N1C6H60.7°0.0°
C1'N1B2H100.3°0.0°
H1'C1'N1B2162.9°135.0°
H1'C1'N1C617.6°45.3°
H1'AC1'N1B242.4°15.0°
H1'AC1'N1C6138.1°165.3°
N1B2C3H10180.0°180.0°
N1B2C3C40.3°0.0°
N1B2C3H3179.6°180.0°
B2N1C6C50.2°0.5°
B2N1C6H6179.8°179.7°
C6N1B2C30.1°0.3°
N1C6C5C40.3°0.5°
N1C6C5H6180.0°179.8°
N1C6C5H5179.7°179.7°
C6N1B2H10179.9°179.7°
B2C3C4H3180.0°180.0°
B2C3C4C50.3°0.0°
B2C3C4H4179.7°180.0°
C3C4C5H4180.0°180.0°
C3C4C5C60.0°0.3°
C3C4C5H5179.9°180.0°
C4C3B2H10179.6°180.0°
H3C3C4C5179.7°180.0°
H3C3C4H40.3°0.0°
H3C3B2H100.4°0.0°
C4C5C6H5180.0°179.8°
C4C5C6H6179.7°179.7°
H4C4C5C6180.0°179.7°
H4C4C5H50.1°0.0°
H5C5C6H60.3°0.1°

246704

PDB entries from 2025-12-24

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