B0Z
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O3' | C3' | sing | 1.43Å | 1.44Å | |
O4' | C4' | sing | 1.43Å | 1.45Å | |
C3' | C4' | sing | 1.53Å | 1.52Å | |
C3' | C2' | sing | 1.53Å | 1.54Å | |
C4' | C5' | sing | 1.53Å | 1.57Å | |
O2' | C2' | sing | 1.43Å | 1.43Å | |
C2' | C1' | sing | 1.53Å | 1.54Å | |
O6' | C6' | sing | 1.43Å | 1.43Å | |
C5' | C6' | sing | 1.53Å | 1.50Å | |
C5' | O5' | sing | 1.43Å | 1.44Å | |
C1' | O5' | sing | 1.43Å | 1.43Å | |
C1' | C1 | sing | 1.51Å | 1.49Å | |
N2 | C1 | doub | 1.31Å | 1.34Å | Aromatic |
N2 | N3 | sing | 1.29Å | 1.37Å | Aromatic |
C1 | N5 | sing | 1.36Å | 1.35Å | Aromatic |
N3 | C4 | doub | 1.31Å | 1.32Å | Aromatic |
N5 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
C4 | C6 | sing | 1.48Å | 1.46Å | |
C6 | C7 | doub | 1.39Å | 1.39Å | Aromatic |
C6 | C11 | sing | 1.40Å | 1.39Å | Aromatic |
C7 | C8 | sing | 1.38Å | 1.39Å | Aromatic |
C11 | C10 | doub | 1.38Å | 1.39Å | Aromatic |
C8 | C9 | doub | 1.38Å | 1.38Å | Aromatic |
C10 | C9 | sing | 1.38Å | 1.38Å | Aromatic |
C9 | C12 | sing | 1.51Å | 1.50Å | |
F14 | C12 | sing | 1.40Å | 1.28Å | |
C12 | F13 | sing | 1.40Å | 1.25Å | |
C12 | F15 | sing | 1.40Å | 1.29Å | |
C11 | H1 | sing | 1.08Å | 1.08Å | |
C8 | H2 | sing | 1.08Å | 1.08Å | |
C7 | H3 | sing | 1.08Å | 1.08Å | |
C10 | H4 | sing | 1.08Å | 1.08Å | |
N5 | H5 | sing | 0.97Å | 1.00Å | |
C1' | H6 | sing | 1.09Å | 1.10Å | |
C2' | H7 | sing | 1.09Å | 1.10Å | |
O2' | H8 | sing | 0.97Å | 0.95Å | |
C5' | H9 | sing | 1.09Å | 1.10Å | |
C6' | H10 | sing | 1.09Å | 1.10Å | |
C6' | H11 | sing | 1.09Å | 1.10Å | |
O6' | H12 | sing | 0.97Å | 0.95Å | |
C4' | H13 | sing | 1.09Å | 1.10Å | |
O4' | H14 | sing | 0.97Å | 0.95Å | |
C3' | H15 | sing | 1.09Å | 1.10Å | |
O3' | H16 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O3' | C3' | C4' | 109.9° | 109.5° |
O3' | C3' | C2' | 110.9° | 109.5° |
O3' | C3' | H15 | 109.1° | 109.6° |
C3' | O3' | H16 | 109.5° | 114.0° |
O4' | C4' | C3' | 111.8° | 109.6° |
O4' | C4' | C5' | 109.0° | 109.5° |
O4' | C4' | H13 | 109.1° | 109.5° |
C4' | O4' | H14 | 109.5° | 114.0° |
C4' | C3' | C2' | 110.8° | 109.1° |
C3' | C4' | C5' | 111.0° | 109.2° |
C3' | C4' | H13 | 108.2° | 109.5° |
C4' | C3' | H15 | 108.2° | 109.6° |
C3' | C2' | O2' | 110.9° | 109.6° |
C3' | C2' | C1' | 110.3° | 109.2° |
C3' | C2' | H7 | 108.0° | 109.5° |
C2' | C3' | H15 | 107.9° | 109.5° |
C4' | C5' | C6' | 112.9° | 109.5° |
C4' | C5' | O5' | 109.7° | 109.4° |
C4' | C5' | H9 | 108.3° | 109.5° |
C5' | C4' | H13 | 107.6° | 109.5° |
O2' | C2' | C1' | 110.1° | 109.5° |
O2' | C2' | H7 | 109.4° | 109.6° |
C2' | O2' | H8 | 109.5° | 114.0° |
C2' | C1' | O5' | 109.7° | 109.4° |
C2' | C1' | C1 | 112.2° | 109.5° |
C2' | C1' | H6 | 108.5° | 109.5° |
C1' | C2' | H7 | 108.1° | 109.5° |
O6' | C6' | C5' | 110.8° | 109.5° |
O6' | C6' | H10 | 109.1° | 109.5° |
O6' | C6' | H11 | 109.2° | 109.5° |
C6' | O6' | H12 | 109.5° | 114.0° |
C6' | C5' | O5' | 106.8° | 109.5° |
C6' | C5' | H9 | 109.2° | 109.5° |
C5' | C6' | H10 | 109.1° | 109.5° |
C5' | C6' | H11 | 109.2° | 109.5° |
C5' | O5' | C1' | 111.5° | 114.1° |
O5' | C5' | H9 | 110.0° | 109.5° |
O5' | C1' | C1 | 107.4° | 109.5° |
O5' | C1' | H6 | 110.0° | 109.5° |
C1' | C1 | N2 | 124.2° | 126.3° |
C1' | C1 | N5 | 127.0° | 126.3° |
C1 | C1' | H6 | 109.1° | 109.5° |
C1 | N2 | N3 | 110.0° | 110.0° |
N2 | C1 | N5 | 108.8° | 107.5° |
N2 | N3 | C4 | 104.2° | 109.7° |
C1 | N5 | C4 | 104.0° | 105.8° |
C1 | N5 | H5 | 128.0° | 127.1° |
N3 | C4 | N5 | 113.0° | 107.0° |
N3 | C4 | C6 | 123.5° | 126.5° |
N5 | C4 | C6 | 123.4° | 126.6° |
C4 | N5 | H5 | 128.0° | 127.1° |
C4 | C6 | C7 | 120.2° | 120.2° |
C4 | C6 | C11 | 120.4° | 120.1° |
C7 | C6 | C11 | 119.5° | 119.7° |
C6 | C7 | C8 | 119.6° | 119.9° |
C6 | C7 | H3 | 120.2° | 120.1° |
C6 | C11 | C10 | 120.9° | 119.8° |
C6 | C11 | H1 | 119.6° | 120.1° |
C7 | C8 | C9 | 120.3° | 120.1° |
C7 | C8 | H2 | 119.8° | 120.0° |
C8 | C7 | H3 | 120.2° | 120.0° |
C11 | C10 | C9 | 118.9° | 120.1° |
C10 | C11 | H1 | 119.6° | 120.0° |
C11 | C10 | H4 | 120.5° | 119.9° |
C8 | C9 | C10 | 120.7° | 120.3° |
C8 | C9 | C12 | 119.0° | 119.9° |
C9 | C8 | H2 | 119.8° | 119.9° |
C10 | C9 | C12 | 120.2° | 119.8° |
C9 | C10 | H4 | 120.5° | 120.0° |
C9 | C12 | F14 | 109.6° | 109.5° |
C9 | C12 | F13 | 113.0° | 109.5° |
C9 | C12 | F15 | 112.6° | 109.5° |
F14 | C12 | F13 | 105.2° | 109.4° |
F14 | C12 | F15 | 109.2° | 109.5° |
F13 | C12 | F15 | 106.9° | 109.4° |
H10 | C6' | H11 | 109.5° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O3' | C3' | C4' | O4' | 65.5° | 63.2° |
O3' | C3' | C4' | C2' | 122.9° | 119.9° |
O3' | C3' | C4' | H15 | 119.0° | 120.2° |
O3' | C3' | C2' | H15 | 119.5° | 120.2° |
O3' | C3' | C4' | C5' | 172.5° | 176.8° |
O3' | C3' | C2' | O2' | 64.0° | 63.2° |
O3' | C3' | C2' | C1' | 173.8° | 176.8° |
O3' | C3' | C2' | H7 | 55.8° | 57.0° |
O3' | C3' | C4' | H13 | 54.6° | 57.0° |
O4' | C4' | C3' | C5' | 122.0° | 120.0° |
O4' | C4' | C3' | H13 | 120.2° | 120.2° |
O4' | C4' | C3' | C2' | 171.6° | 176.9° |
O4' | C4' | C5' | H13 | 118.2° | 120.1° |
O4' | C4' | C5' | C6' | 62.8° | 62.4° |
O4' | C4' | C5' | O5' | 178.2° | 177.6° |
O4' | C4' | C5' | H9 | 58.2° | 57.6° |
O4' | C4' | C3' | H15 | 53.5° | 57.0° |
C4' | C3' | C2' | H15 | 118.2° | 119.9° |
C3' | C4' | C5' | H13 | 118.2° | 119.9° |
C4' | C3' | C2' | O2' | 173.7° | 176.9° |
C4' | C3' | C2' | C1' | 51.4° | 57.0° |
C3' | C4' | C5' | C6' | 173.6° | 177.6° |
C3' | C4' | C5' | O5' | 54.7° | 57.6° |
C4' | C3' | C2' | H7 | 66.5° | 62.9° |
C3' | C4' | C5' | H9 | 65.4° | 62.4° |
C3' | C4' | O4' | H14 | 180.0° | 60.2° |
C4' | C3' | O3' | H16 | 180.0° | 180.0° |
C2' | C3' | C4' | C5' | 49.6° | 57.0° |
C3' | C2' | O2' | C1' | 122.4° | 119.7° |
C3' | C2' | O2' | H7 | 119.0° | 120.2° |
C3' | C2' | C1' | H7 | 117.9° | 119.9° |
C3' | C2' | C1' | O5' | 58.3° | 57.6° |
C3' | C2' | C1' | C1 | 177.6° | 177.6° |
C3' | C2' | C1' | H6 | 61.9° | 62.4° |
C3' | C2' | O2' | H8 | 180.0° | 60.3° |
C2' | C3' | C4' | H13 | 68.3° | 62.9° |
C2' | C3' | O3' | H16 | 57.2° | 60.4° |
C4' | C5' | C6' | O6' | 45.9° | 175.0° |
C4' | C5' | C6' | O5' | 120.6° | 120.0° |
C4' | C5' | C6' | H9 | 120.5° | 120.0° |
C4' | C5' | O5' | H9 | 119.0° | 120.0° |
C4' | C5' | O5' | C1' | 62.9° | 61.1° |
C4' | C5' | C6' | H10 | 74.3° | 55.0° |
C4' | C5' | C6' | H11 | 166.1° | 65.0° |
C5' | C4' | O4' | H14 | 56.9° | 180.0° |
C5' | C4' | C3' | H15 | 68.5° | 62.9° |
O2' | C2' | C1' | H7 | 119.4° | 120.1° |
O2' | C2' | C1' | O5' | 179.0° | 177.6° |
O2' | C2' | C1' | C1 | 59.7° | 62.4° |
O2' | C2' | C1' | H6 | 60.8° | 57.6° |
O2' | C2' | C3' | H15 | 55.4° | 57.0° |
C2' | C1' | O5' | C5' | 65.3° | 61.1° |
C2' | C1' | O5' | C1 | 122.2° | 120.0° |
C2' | C1' | O5' | H6 | 119.3° | 120.0° |
C2' | C1' | C1 | H6 | 120.3° | 120.0° |
C2' | C1' | C1 | N2 | 38.8° | 55.3° |
C2' | C1' | C1 | N5 | 142.8° | 125.1° |
C1' | C2' | O2' | H8 | 57.6° | 180.0° |
C1' | C2' | C3' | H15 | 66.8° | 62.9° |
O6' | C6' | C5' | H10 | 120.2° | 120.0° |
O6' | C6' | C5' | H11 | 120.2° | 120.0° |
O6' | C6' | C5' | O5' | 74.8° | 65.0° |
O6' | C6' | C5' | H9 | 166.4° | 55.0° |
O6' | C6' | H10 | H11 | 119.4° | 120.0° |
C6' | C5' | O5' | H9 | 118.3° | 120.0° |
C6' | C5' | O5' | C1' | 174.5° | 178.9° |
C5' | C6' | H10 | H11 | 119.4° | 120.0° |
C5' | C6' | O6' | H12 | 180.0° | 180.0° |
C6' | C5' | C4' | H13 | 55.4° | 57.7° |
C5' | O5' | C1' | C1 | 172.6° | 178.9° |
C5' | O5' | C1' | H6 | 54.0° | 58.9° |
O5' | C5' | C6' | H10 | 165.1° | 175.0° |
O5' | C5' | C6' | H11 | 45.5° | 55.0° |
O5' | C5' | C4' | H13 | 63.6° | 62.3° |
O5' | C1' | C1 | H6 | 119.1° | 120.0° |
O5' | C1' | C1 | N2 | 81.8° | 64.7° |
O5' | C1' | C1 | N5 | 96.6° | 114.9° |
O5' | C1' | C2' | H7 | 59.6° | 62.3° |
C1' | O5' | C5' | H9 | 56.1° | 58.9° |
C1' | C1 | N2 | N5 | 178.6° | 179.7° |
C1' | C1 | N2 | N3 | 179.4° | 179.7° |
C1' | C1 | N5 | C4 | 178.6° | 179.7° |
C1' | C1 | N5 | H5 | 1.4° | 0.3° |
C1 | C1' | C2' | H7 | 59.7° | 57.7° |
C1 | N2 | N3 | C4 | 1.2° | 0.1° |
N2 | C1 | N5 | C4 | 0.0° | 0.0° |
N2 | C1 | N5 | H5 | 180.0° | 180.0° |
N2 | C1 | C1' | H6 | 159.1° | 175.3° |
N3 | N2 | C1 | N5 | 0.8° | 0.1° |
N2 | N3 | C4 | N5 | 1.2° | 0.0° |
N2 | N3 | C4 | C6 | 179.8° | 180.0° |
C1 | N5 | C4 | N3 | 0.8° | 0.0° |
C1 | N5 | C4 | H5 | 180.0° | 179.9° |
C1 | N5 | C4 | C6 | 179.8° | 179.9° |
N5 | C1 | C1' | H6 | 22.5° | 5.1° |
N3 | C4 | N5 | C6 | 179.0° | 180.0° |
N3 | C4 | C6 | C7 | 7.5° | 0.0° |
N3 | C4 | C6 | C11 | 171.2° | 179.8° |
N3 | C4 | N5 | H5 | 179.2° | 179.9° |
N5 | C4 | C6 | C7 | 171.4° | 180.0° |
N5 | C4 | C6 | C11 | 10.0° | 0.2° |
C4 | C6 | C7 | C11 | 178.7° | 179.8° |
C4 | C6 | C7 | C8 | 179.6° | 180.0° |
C4 | C6 | C11 | C10 | 179.4° | 180.0° |
C4 | C6 | C11 | H1 | 0.6° | 0.0° |
C4 | C6 | C7 | H3 | 0.4° | 0.0° |
C6 | C4 | N5 | H5 | 0.2° | 0.0° |
C6 | C7 | C8 | H3 | 180.0° | 180.0° |
C7 | C6 | C11 | C10 | 0.8° | 0.2° |
C6 | C7 | C8 | C9 | 2.9° | 0.0° |
C7 | C6 | C11 | H1 | 179.2° | 179.8° |
C6 | C7 | C8 | H2 | 177.1° | 180.0° |
C11 | C6 | C7 | C8 | 1.7° | 0.2° |
C6 | C11 | C10 | H1 | 180.0° | 180.0° |
C6 | C11 | C10 | C9 | 1.0° | 0.0° |
C11 | C6 | C7 | H3 | 178.3° | 179.7° |
C6 | C11 | C10 | H4 | 178.9° | 180.0° |
C7 | C8 | C9 | H2 | 180.0° | 180.0° |
C7 | C8 | C9 | C10 | 3.2° | 0.3° |
C7 | C8 | C9 | C12 | 179.5° | 180.0° |
C11 | C10 | C9 | C8 | 2.3° | 0.3° |
C11 | C10 | C9 | H4 | 180.0° | 180.0° |
C11 | C10 | C9 | C12 | 178.6° | 180.0° |
C8 | C9 | C10 | C12 | 176.3° | 179.7° |
C8 | C9 | C12 | F14 | 63.7° | 30.0° |
C8 | C9 | C12 | F13 | 53.2° | 90.0° |
C8 | C9 | C12 | F15 | 174.5° | 150.0° |
C9 | C8 | C7 | H3 | 177.1° | 180.0° |
C8 | C9 | C10 | H4 | 177.7° | 179.7° |
C10 | C9 | C12 | F14 | 112.7° | 149.8° |
C10 | C9 | C12 | F13 | 130.4° | 90.3° |
C10 | C9 | C12 | F15 | 9.1° | 29.7° |
C9 | C10 | C11 | H1 | 179.0° | 180.0° |
C10 | C9 | C8 | H2 | 176.8° | 179.7° |
C9 | C12 | F14 | F13 | 121.7° | 120.0° |
C9 | C12 | F14 | F15 | 123.8° | 120.0° |
C9 | C12 | F13 | F15 | 124.4° | 120.0° |
C12 | C9 | C8 | H2 | 0.5° | 0.0° |
C12 | C9 | C10 | H4 | 1.4° | 0.0° |
F14 | C12 | F13 | F15 | 116.1° | 120.0° |
H1 | C11 | C10 | H4 | 1.1° | 0.0° |
H2 | C8 | C7 | H3 | 2.9° | 0.0° |
H6 | C1' | C2' | H7 | 179.7° | 177.7° |
H7 | C2' | O2' | H8 | 61.0° | 59.9° |
H7 | C2' | C3' | H15 | 175.3° | 177.2° |
H9 | C5' | C6' | H10 | 46.2° | 65.0° |
H9 | C5' | C6' | H11 | 73.4° | 175.0° |
H9 | C5' | C4' | H13 | 176.4° | 177.7° |
H10 | C6' | O6' | H12 | 59.8° | 60.0° |
H11 | C6' | O6' | H12 | 59.8° | 60.0° |
H13 | C4' | O4' | H14 | 60.4° | 60.0° |
H13 | C4' | C3' | H15 | 173.7° | 177.2° |
H15 | C3' | O3' | H16 | 61.5° | 59.8° |