AZW

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP1	P	doub	1.48Å	1.48Å
P	OP2	sing	1.61Å	1.48Å
P	O5'	sing	1.61Å	1.59Å
C5'	O5'	sing	1.43Å	1.42Å
C5'	C1A	sing	1.51Å	1.51Å
C2A	C1A	doub	1.38Å	1.40Å	Aromatic
C2A	C3A	sing	1.38Å	1.40Å	Aromatic
C1A	C6A	sing	1.38Å	1.40Å	Aromatic
C3A	C4A	doub	1.40Å	1.40Å	Aromatic
C6A	C5A	doub	1.38Å	1.40Å	Aromatic
C4A	C5A	sing	1.40Å	1.40Å	Aromatic
C4A	N5A	sing	1.37Å	1.41Å
N5B	N5A	doub	1.29Å	1.30Å
N5B	C4B	sing	1.37Å	1.41Å
C3B	C4B	doub	1.40Å	1.40Å	Aromatic
C3B	C2B	sing	1.38Å	1.40Å	Aromatic
C4B	C5B	sing	1.40Å	1.40Å	Aromatic
C2B	C1B	doub	1.38Å	1.41Å	Aromatic
C5B	C6B	doub	1.38Å	1.40Å	Aromatic
C1B	C6B	sing	1.38Å	1.40Å	Aromatic
C1B	C3'	sing	1.51Å	1.51Å
O3'	C3'	sing	1.43Å	1.42Å
OP2	H2	sing	0.97Å	0.95Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C2A	H2A	sing	1.08Å	1.08Å
C6A	H6A	sing	1.08Å	1.08Å
C3A	H3A	sing	1.08Å	1.08Å
C5A	H5A	sing	1.08Å	1.08Å
C2B	H2B	sing	1.08Å	1.08Å
C6B	H6B	sing	1.08Å	1.08Å
C3B	H3B	sing	1.08Å	1.08Å
C5B	H5B	sing	1.08Å	1.08Å
C3'	H3'	sing	1.09Å	1.10Å
C3'	H3''	sing	1.09Å	1.10Å
O3'	H3	sing	0.97Å	0.95Å
P	OP3	sing	1.61Å	13.53Å
OP3	HOP3	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
OP1	P	OP2	118.4°	109.5°
OP1	P	O5'	107.1°	109.4°
OP1	P	OP3	160.9°	109.5°
OP2	P	O5'	108.1°	109.5°
P	OP2	H2	109.5°	114.0°
OP2	P	OP3	52.2°	109.5°
P	O5'	C5'	119.2°	123.0°
O5'	P	OP3	66.5°	109.5°
O5'	C5'	C1A	110.0°	109.5°
O5'	C5'	H5'	109.3°	109.5°
O5'	C5'	H5''	109.3°	109.5°
C5'	C1A	C2A	119.7°	119.8°
C5'	C1A	C6A	120.2°	119.8°
C1A	C5'	H5'	109.4°	109.4°
C1A	C5'	H5''	109.3°	109.5°
C1A	C2A	C3A	119.9°	120.2°
C2A	C1A	C6A	120.1°	120.3°
C1A	C2A	H2A	120.0°	119.9°
C2A	C3A	C4A	120.0°	119.8°
C3A	C2A	H2A	120.1°	119.9°
C2A	C3A	H3A	120.0°	120.1°
C1A	C6A	C5A	119.9°	120.1°
C1A	C6A	H6A	120.1°	119.9°
C3A	C4A	C5A	120.1°	119.7°
C3A	C4A	N5A	119.8°	120.1°
C4A	C3A	H3A	120.0°	120.1°
C6A	C5A	C4A	119.9°	119.9°
C5A	C6A	H6A	120.1°	119.9°
C6A	C5A	H5A	120.0°	120.0°
C5A	C4A	N5A	120.0°	120.2°
C4A	C5A	H5A	120.0°	120.1°
C4A	N5A	N5B	122.3°	120.0°
N5A	N5B	C4B	123.7°	120.0°
N5B	C4B	C3B	119.9°	120.2°
N5B	C4B	C5B	120.1°	120.1°
C4B	C3B	C2B	120.1°	119.8°
C3B	C4B	C5B	120.0°	119.7°
C4B	C3B	H3B	120.0°	120.1°
C3B	C2B	C1B	120.0°	120.2°
C3B	C2B	H2B	120.0°	119.9°
C2B	C3B	H3B	119.9°	120.1°
C4B	C5B	C6B	120.0°	119.8°
C4B	C5B	H5B	120.0°	120.0°
C2B	C1B	C6B	119.8°	120.3°
C2B	C1B	C3'	120.6°	119.8°
C1B	C2B	H2B	120.0°	119.9°
C5B	C6B	C1B	120.1°	120.2°
C5B	C6B	H6B	119.9°	119.9°
C6B	C5B	H5B	120.0°	120.1°
C6B	C1B	C3'	119.6°	119.8°
C1B	C6B	H6B	119.9°	119.9°
C1B	C3'	O3'	111.2°	109.5°
C1B	C3'	H3'	109.0°	109.5°
C1B	C3'	H3''	109.0°	109.5°
O3'	C3'	H3'	109.0°	109.5°
O3'	C3'	H3''	109.0°	109.5°
C3'	O3'	H3	109.5°	114.0°
H5'	C5'	H5''	109.5°	109.5°
H3'	C3'	H3''	109.5°	109.4°
P	OP3	HOP3	90.0°	114.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP1	P	OP2	O5'	121.9°	120.0°
OP1	P	OP2	OP3	160.1°	120.0°
OP1	P	O5'	OP3	160.8°	120.0°
OP1	P	O5'	C5'	52.5°	55.0°
OP1	P	OP2	H2	0.0°	179.9°
OP1	P	OP3	HOP3	90.0°	60.0°
OP2	P	O5'	OP3	32.2°	120.0°
OP2	P	O5'	C5'	76.2°	65.0°
OP2	P	OP3	HOP3	90.0°	60.1°
P	O5'	C5'	C1A	143.5°	180.0°
O5'	P	OP2	H2	121.9°	60.1°
P	O5'	C5'	H5'	96.3°	60.0°
P	O5'	C5'	H5''	23.5°	60.0°
O5'	P	OP3	HOP3	90.0°	180.0°
O5'	C5'	C1A	H5'	120.1°	120.0°
O5'	C5'	C1A	H5''	120.1°	120.0°
O5'	C5'	C1A	C2A	125.2°	89.7°
O5'	C5'	C1A	C6A	56.8°	90.0°
O5'	C5'	H5'	H5''	119.7°	120.0°
C5'	O5'	P	OP3	108.3°	175.0°
C5'	C1A	C2A	C6A	178.0°	179.7°
C5'	C1A	C2A	C3A	177.5°	179.9°
C5'	C1A	C6A	C5A	177.5°	179.9°
C1A	C5'	H5'	H5''	119.8°	120.0°
C5'	C1A	C2A	H2A	2.5°	0.1°
C5'	C1A	C6A	H6A	2.5°	0.1°
C1A	C2A	C3A	H2A	180.0°	180.0°
C1A	C2A	C3A	C4A	0.1°	0.0°
C2A	C1A	C6A	C5A	0.5°	0.3°
C2A	C1A	C5'	H5'	114.8°	150.3°
C2A	C1A	C5'	H5''	5.1°	30.3°
C2A	C1A	C6A	H6A	179.5°	179.8°
C1A	C2A	C3A	H3A	180.0°	179.9°
C3A	C2A	C1A	C6A	0.5°	0.3°
C2A	C3A	C4A	H3A	180.0°	179.9°
C2A	C3A	C4A	C5A	0.4°	0.3°
C2A	C3A	C4A	N5A	177.5°	179.9°
C1A	C6A	C5A	H6A	180.0°	180.0°
C1A	C6A	C5A	C4A	0.1°	0.0°
C6A	C1A	C5'	H5'	63.3°	30.0°
C6A	C1A	C5'	H5''	176.9°	150.0°
C6A	C1A	C2A	H2A	179.5°	179.7°
C1A	C6A	C5A	H5A	179.9°	180.0°
C3A	C4A	C5A	C6A	0.4°	0.3°
C3A	C4A	C5A	N5A	177.9°	179.8°
C3A	C4A	N5A	N5B	96.6°	180.0°
C4A	C3A	C2A	H2A	179.9°	180.0°
C3A	C4A	C5A	H5A	179.6°	179.7°
C6A	C5A	C4A	H5A	180.0°	180.0°
C6A	C5A	C4A	N5A	177.5°	179.9°
C5A	C4A	N5A	N5B	81.3°	0.2°
C4A	C5A	C6A	H6A	179.9°	180.0°
C5A	C4A	C3A	H3A	179.6°	179.8°
C4A	N5A	N5B	C4B	179.7°	180.0°
N5A	C4A	C3A	H3A	2.5°	0.0°
N5A	C4A	C5A	H5A	2.5°	0.1°
N5A	N5B	C4B	C3B	153.5°	180.0°
N5A	N5B	C4B	C5B	26.8°	0.2°
N5B	C4B	C3B	C5B	179.8°	179.8°
N5B	C4B	C3B	C2B	179.9°	180.0°
N5B	C4B	C5B	C6B	179.8°	179.8°
N5B	C4B	C3B	H3B	0.1°	0.2°
N5B	C4B	C5B	H5B	0.2°	0.2°
C4B	C3B	C2B	H3B	180.0°	179.8°
C4B	C3B	C2B	C1B	0.0°	0.0°
C3B	C4B	C5B	C6B	0.1°	0.4°
C4B	C3B	C2B	H2B	179.9°	180.0°
C3B	C4B	C5B	H5B	180.0°	180.0°
C2B	C3B	C4B	C5B	0.1°	0.2°
C3B	C2B	C1B	H2B	180.0°	180.0°
C3B	C2B	C1B	C6B	0.1°	0.0°
C3B	C2B	C1B	C3'	179.5°	179.7°
C4B	C5B	C6B	H5B	180.0°	179.6°
C4B	C5B	C6B	C1B	0.1°	0.5°
C4B	C5B	C6B	H6B	179.9°	179.5°
C5B	C4B	C3B	H3B	179.9°	180.0°
C2B	C1B	C6B	C5B	0.1°	0.3°
C2B	C1B	C6B	C3'	179.6°	179.7°
C2B	C1B	C3'	O3'	2.6°	89.7°
C2B	C1B	C6B	H6B	179.8°	179.7°
C1B	C2B	C3B	H3B	180.0°	179.8°
C2B	C1B	C3'	H3'	117.6°	30.3°
C2B	C1B	C3'	H3''	122.8°	150.3°
C5B	C6B	C1B	H6B	180.0°	180.0°
C5B	C6B	C1B	C3'	179.5°	180.0°
C6B	C1B	C3'	O3'	177.8°	90.0°
C6B	C1B	C2B	H2B	179.9°	180.0°
C1B	C6B	C5B	H5B	179.9°	180.0°
C6B	C1B	C3'	H3'	62.0°	150.0°
C6B	C1B	C3'	H3''	57.5°	30.0°
C1B	C3'	O3'	H3'	120.3°	120.0°
C1B	C3'	O3'	H3''	120.3°	120.0°
C3'	C1B	C2B	H2B	0.5°	0.3°
C3'	C1B	C6B	H6B	0.5°	0.0°
C1B	C3'	H3'	H3''	119.2°	120.0°
C1B	C3'	O3'	H3	180.0°	179.9°
O3'	C3'	H3'	H3''	119.2°	120.0°
H2	OP2	P	OP3	160.1°	59.9°
H2A	C2A	C3A	H3A	0.0°	0.1°
H6A	C6A	C5A	H5A	0.1°	0.0°
H2B	C2B	C3B	H3B	0.1°	0.2°
H6B	C6B	C5B	H5B	0.1°	0.1°
H3'	C3'	O3'	H3	59.8°	59.9°
H3''	C3'	O3'	H3	59.7°	60.0°

Release date:	2016-02-17
Definition date:	2015-12-04
Last modified:	2016-02-12
Release status:	REL
Processing site:	RCSB
Derived from:	2N9Q