English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

AZ9

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N3	C4	doub	1.32Å	1.32Å	Aromatic
N3	C2	sing	1.32Å	1.33Å	Aromatic
C4	N5	sing	1.32Å	1.32Å	Aromatic
O1	C1	doub	1.21Å	1.22Å
C2	C1	sing	1.48Å	1.47Å
C2	C7	doub	1.41Å	1.42Å	Aromatic
C1	N10	sing	1.35Å	1.33Å
N5	N6	doub	1.29Å	1.31Å	Aromatic
C7	N6	sing	1.33Å	1.32Å	Aromatic
C7	N8	sing	1.38Å	1.38Å
N10	C12	sing	1.46Å	1.47Å
N10	C9	sing	1.34Å	1.33Å
C9	N8	sing	1.34Å	1.32Å
C9	O2	doub	1.22Å	1.20Å
C4	H1	sing	1.08Å	1.08Å
C12	H2	sing	1.09Å	1.10Å
C12	H3	sing	1.09Å	1.10Å
C12	H4	sing	1.09Å	1.10Å
N8	H5	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	N3	C2	116.8°	118.8°
N3	C4	N5	124.9°	121.3°
N3	C4	H1	117.5°	119.4°
N3	C2	C1	123.4°	122.5°
N3	C2	C7	117.8°	119.2°
C4	N5	N6	120.8°	122.1°
N5	C4	H1	117.5°	119.3°
O1	C1	C2	123.4°	121.0°
O1	C1	N10	118.9°	121.0°
C1	C2	C7	118.8°	118.3°
C2	C1	N10	117.7°	118.0°
C2	C7	N6	122.5°	118.8°
C2	C7	N8	117.7°	118.8°
C1	N10	C12	119.6°	119.4°
C1	N10	C9	121.3°	121.2°
N5	N6	C7	117.1°	119.7°
N6	C7	N8	119.7°	122.3°
C7	N8	C9	120.5°	120.7°
C7	N8	H5	119.7°	119.6°
C12	N10	C9	119.0°	119.5°
N10	C12	H2	109.5°	109.4°
N10	C12	H3	109.5°	109.5°
N10	C12	H4	109.5°	109.5°
N10	C9	N8	124.0°	123.0°
N10	C9	O2	118.7°	118.5°
N8	C9	O2	117.3°	118.5°
C9	N8	H5	119.8°	119.7°
H2	C12	H3	109.5°	109.5°
H2	C12	H4	109.5°	109.4°
H3	C12	H4	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N3	C4	N5	H1	180.0°	179.9°
C4	N3	C2	C1	179.9°	180.0°
C4	N3	C2	C7	1.7°	0.5°
N3	C4	N5	N6	0.9°	0.1°
C2	N3	C4	N5	0.1°	0.2°
N3	C2	C1	O1	1.5°	0.0°
N3	C2	C1	C7	178.2°	179.5°
N3	C2	C1	N10	179.0°	180.0°
N3	C2	C7	N6	2.6°	0.5°
N3	C2	C7	N8	179.9°	179.8°
C2	N3	C4	H1	179.9°	179.7°
C4	N5	N6	C7	0.1°	0.0°
O1	C1	C2	N10	179.5°	180.0°
O1	C1	C2	C7	179.7°	179.5°
O1	C1	N10	C12	1.0°	0.0°
O1	C1	N10	C9	178.5°	180.0°
C1	C2	C7	N6	179.1°	179.9°
C1	C2	C7	N8	1.8°	0.3°
C2	C1	N10	C12	178.5°	180.0°
C2	C1	N10	C9	1.0°	0.1°
C7	C2	C1	N10	0.8°	0.5°
C2	C7	N6	N5	1.6°	0.3°
C2	C7	N6	N8	177.2°	179.7°
C2	C7	N8	C9	1.2°	0.5°
C2	C7	N8	H5	178.8°	179.8°
C1	N10	C12	C9	177.6°	179.9°
C1	N10	C9	N8	1.7°	0.8°
C1	N10	C9	O2	179.1°	180.0°
C1	N10	C12	H2	180.0°	90.0°
C1	N10	C12	H3	60.0°	150.0°
C1	N10	C12	H4	60.0°	29.9°
N5	N6	C7	N8	178.8°	179.9°
N6	N5	C4	H1	179.1°	180.0°
N6	C7	N8	C9	178.6°	179.2°
N6	C7	N8	H5	1.4°	0.1°
C7	N8	C9	N10	0.6°	1.0°
C7	N8	C9	H5	180.0°	179.3°
C7	N8	C9	O2	179.7°	179.8°
C12	N10	C9	N8	179.3°	179.2°
C12	N10	C9	O2	1.5°	0.0°
N10	C12	H2	H3	120.0°	120.0°
N10	C12	H2	H4	120.0°	120.0°
N10	C12	H3	H4	120.0°	120.1°
N10	C9	N8	O2	179.2°	179.2°
C9	N10	C12	H2	2.4°	90.0°
C9	N10	C12	H3	122.4°	29.9°
C9	N10	C12	H4	117.6°	150.0°
N10	C9	N8	H5	179.5°	179.6°
O2	C9	N8	H5	0.3°	0.4°
H2	C12	H3	H4	120.0°	120.0°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon