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AYL

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Psing1.61Å1.61Å
PO2Psing1.61Å1.61Å
PO3Pdoub1.48Å1.61Å
PO5'sing1.61Å1.61Å
N1C2doub1.32Å1.32ÅAromatic
N1C6sing1.33Å1.34ÅAromatic
C2N3sing1.32Å1.32ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
C4C5sing1.41Å1.39ÅAromatic
C4N9sing1.37Å1.33ÅAromatic
C5C6doub1.41Å1.39ÅAromatic
C5N7sing1.36Å1.33ÅAromatic
C6N6sing1.38Å1.33Å
N7C8doub1.30Å1.47ÅAromatic
C8N9sing1.36Å1.47ÅAromatic
N9C1'sing1.47Å1.48Å
C1'C2'sing1.55Å1.53Å
C1'O4'sing1.44Å1.44Å
C2'O2'sing1.43Å1.43Å
C2'C3'sing1.55Å1.53Å
O2PCARsing1.43Å1.43Å
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.53Å
C4'O4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
CACCADdoub1.39Å1.39ÅAromatic
CACCASsing1.39Å1.39ÅAromatic
CACOBFsing1.36Å1.36Å
CADCAJsing1.38Å1.39ÅAromatic
CAHCAKsing1.38Å1.39ÅAromatic
CAHCASdoub1.38Å1.39ÅAromatic
CAJCAKdoub1.38Å1.39ÅAromatic
CAKCAPsing1.51Å1.53Å
CAPCAQsing1.53Å1.53Å
CAQCARsing1.53Å1.53Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
O1PHO1Psing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
CADHADsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CAPHAPsing1.09Å1.10Å
CAPHAPAsing1.09Å1.10Å
CAQHAQsing1.09Å1.10Å
CAQHAQAsing1.09Å1.10Å
CARHARsing1.09Å1.10Å
CARHARAsing1.09Å1.10Å
CASHASsing1.08Å1.08Å
OBFHOBFsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P109.2°109.4°
O1PPO3P110.2°109.5°
O1PPO5'109.7°109.5°
PO1PHO1P109.5°114.1°
O2PPO3P109.3°109.5°
O2PPO5'108.7°109.5°
PO2PCAR119.2°123.0°
O3PPO5'109.7°109.5°
PO5'C5'118.8°123.0°
C2N1C6121.0°121.2°
N1C2N3121.3°122.4°
N1C2H2119.4°118.8°
N1C6C5119.6°118.4°
N1C6N6119.9°120.8°
C2N3C4121.0°120.7°
N3C2H2119.3°118.8°
N3C4C5119.5°119.0°
N3C4N9131.2°135.0°
C5C4N9109.2°106.0°
C4C5C6117.6°118.2°
C4C5N7110.1°107.2°
C4N9C8109.3°107.5°
C4N9C1'127.6°126.3°
C6C5N7132.1°134.7°
C5C6N6120.5°120.8°
C5N7C8108.5°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
N7C8N9102.2°110.0°
N7C8H8128.9°125.0°
C8N9C1'123.1°126.2°
N9C8H8128.9°125.0°
N9C1'C2'108.6°110.6°
N9C1'O4'107.8°110.7°
N9C1'H1'110.1°110.6°
C2'C1'O4'106.3°103.5°
C1'C2'O2'109.9°110.9°
C1'C2'C3'100.8°102.1°
C2'C1'H1'111.6°110.6°
C1'C2'H2'115.1°110.9°
C1'O4'C4'107.3°107.0°
O4'C1'H1'112.3°110.7°
O2'C2'C3'110.6°110.9°
O2'C2'H2'106.0°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'110.2°110.4°
C2'C3'C4'97.6°104.2°
C3'C2'H2'114.4°110.9°
C2'C3'H3'116.4°110.5°
O2PCARCAQ111.3°109.5°
O2PCARHAR108.9°109.5°
O2PCARHARA108.9°109.4°
O3'C3'C4'109.5°110.5°
O3'C3'H3'105.9°110.4°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'103.9°107.3°
C3'C4'C5'111.0°109.9°
C4'C3'H3'117.1°110.7°
C3'C4'H4'112.9°109.9°
O4'C4'C5'111.7°109.9°
O4'C4'H4'112.2°109.8°
C4'C5'O5'111.1°109.5°
C5'C4'H4'105.3°110.0°
C4'C5'H5'108.9°109.5°
C4'C5'H5'A109.0°109.5°
O5'C5'H5'108.9°109.4°
O5'C5'H5'A109.0°109.4°
CADCACCAS119.8°119.9°
CADCACOBF120.1°120.0°
CACCADCAJ120.1°120.0°
CACCADHAD119.9°120.0°
CASCACOBF120.1°120.1°
CACCASCAH120.0°119.9°
CACCASHAS120.0°120.0°
CACOBFHOBF109.5°114.0°
CADCAJCAK120.1°120.0°
CAJCADHAD119.9°120.0°
CADCAJHAJ119.9°120.0°
CAKCAHCAS120.2°120.1°
CAHCAKCAJ119.7°120.1°
CAHCAKCAP119.9°120.0°
CAKCAHHAH119.9°119.9°
CASCAHHAH119.9°120.0°
CAHCASHAS120.0°120.0°
CAJCAKCAP120.3°119.9°
CAKCAJHAJ119.9°120.0°
CAKCAPCAQ111.6°109.4°
CAKCAPHAP108.8°109.5°
CAKCAPHAPA108.8°109.5°
CAPCAQCAR112.1°109.5°
CAQCAPHAP108.8°109.5°
CAQCAPHAPA108.7°109.4°
CAPCAQHAQ108.6°109.5°
CAPCAQHAQA108.6°109.4°
CARCAQHAQ108.6°109.5°
CARCAQHAQA108.6°109.5°
CAQCARHAR108.9°109.5°
CAQCARHARA108.9°109.4°
HN6N6HN6A109.5°120.0°
H5'C5'H5'A110.0°109.4°
HAPCAPHAPA110.2°109.5°
HAQCAQHAQA110.3°109.5°
HARCARHARA110.1°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO3P120.6°120.0°
O1PPO2PO5'119.7°119.9°
O1PPO3PO5'120.9°120.0°
O1PPO2PCAR160.5°65.1°
O1PPO5'C5'59.7°65.0°
O2PPO3PO5'119.1°120.0°
O2PPO5'C5'59.6°175.1°
PO2PCARCAQ176.2°180.0°
O2PPO1PHO1P120.0°60.0°
PO2PCARHAR63.8°59.9°
PO2PCARHARA56.2°60.1°
O3PPO2PCAR39.9°54.9°
O3PPO5'C5'179.1°55.0°
O3PPO1PHO1P0.0°180.0°
O5'PO2PCAR79.8°175.0°
PO5'C5'C4'171.3°180.0°
O5'PO1PHO1P120.9°60.0°
PO5'C5'H5'68.7°59.9°
PO5'C5'H5'A51.3°60.0°
N1C2N3H2180.0°180.0°
N1C2N3C40.1°0.0°
C2N1C6C50.0°0.0°
C2N1C6N6179.6°180.0°
C6N1C2N30.1°0.0°
N1C6C5C40.1°0.1°
N1C6C5N6179.6°180.0°
N1C6C5N7174.2°180.0°
C6N1C2H2179.9°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C50.0°0.0°
C2N3C4N9177.2°180.0°
N3C4C5N9177.8°180.0°
N3C4C5C60.1°0.0°
N3C4C5N7175.4°180.0°
N3C4N9C8179.3°180.0°
N3C4N9C1'0.2°0.0°
C4N3C2H2179.9°180.0°
C4C5C6N7174.1°179.9°
C4C5C6N6179.7°180.0°
C4C5N7C86.9°0.0°
C5C4N9C83.2°0.0°
C5C4N9C1'177.2°179.9°
N9C4C5C6177.7°180.0°
N9C4C5N72.4°0.0°
C4N9C8N76.9°0.0°
C4N9C8C1'179.6°179.9°
C4N9C1'C2'83.2°85.0°
C4N9C1'O4'162.1°160.9°
C4N9C8H8173.1°179.9°
C4N9C1'H1'39.3°37.8°
C6C5N7C8178.7°180.0°
C5C6N6HN6179.6°180.0°
C5C6N6HN6A60.4°0.0°
N7C5C6N66.2°0.0°
C5N7C8N98.3°0.0°
C5N7C8H8171.7°180.0°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°179.9°
N7C8N9C1'173.5°179.9°
C8N9C1'C2'96.3°95.1°
C8N9C1'O4'18.4°19.0°
C8N9C1'H1'141.2°142.1°
N9C1'C2'O4'115.7°118.6°
N9C1'C2'H1'121.6°122.8°
N9C1'O4'H1'121.5°123.0°
N9C1'C2'O2'156.2°86.2°
N9C1'C2'C3'87.0°155.5°
N9C1'O4'C4'117.0°158.5°
C1'N9C8H86.5°0.2°
N9C1'C2'H2'36.6°37.4°
C2'C1'O4'H1'122.3°118.5°
C1'C2'O2'C3'110.4°112.8°
C1'C2'O2'H2'125.0°123.6°
C1'C2'C3'H2'124.1°118.2°
C1'C2'C3'O3'158.5°97.8°
C1'C2'C3'C4'44.5°20.8°
C2'C1'O4'C4'0.8°40.0°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'80.9°139.7°
O4'C1'C2'O2'88.1°155.2°
O4'C1'C2'C3'28.7°37.0°
C1'O4'C4'C3'30.3°26.5°
C1'O4'C4'C5'150.1°145.9°
O4'C1'C2'H2'152.3°81.2°
C1'O4'C4'H4'92.0°92.9°
O2'C2'C3'H2'119.7°123.6°
O2'C2'C3'O3'42.3°20.4°
O2'C2'C3'C4'71.7°139.0°
O2'C2'C1'H1'34.7°36.6°
O2'C2'C3'H3'162.9°102.1°
C2'C3'O3'C4'106.2°114.7°
C2'C3'O3'H3'126.7°122.5°
C2'C3'C4'H3'124.9°118.8°
C2'C3'C4'O4'46.9°2.1°
C2'C3'C4'C5'167.1°121.5°
C3'C2'C1'H1'151.4°81.7°
C3'C2'O2'HO2'69.6°67.2°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'75.0°117.3°
O2PCARCAQCAP68.2°179.9°
O2PCARCAQHAR120.0°120.1°
O2PCARCAQHARA120.0°119.9°
O2PCARCAQHAQ51.8°60.0°
O2PCARCAQHAQA171.8°60.0°
O2PCARHARHARA119.3°120.0°
O3'C3'C4'H3'120.5°122.6°
O3'C3'C4'O4'161.4°120.7°
O3'C3'C4'C5'78.3°119.9°
O3'C3'C2'H2'77.4°144.0°
O3'C3'C4'H4'39.6°1.3°
C3'C4'O4'C5'119.8°119.4°
C3'C4'O4'H4'122.3°119.5°
C3'C4'C5'H4'122.5°121.1°
C3'C4'C5'O5'174.3°175.0°
C4'C3'C2'H2'168.6°97.4°
C4'C3'O3'HO3'73.8°176.2°
C3'C4'C5'H5'65.7°55.0°
C3'C4'C5'H5'A54.2°65.0°
O4'C4'C5'H4'122.0°121.0°
O4'C4'C5'O5'58.8°67.2°
C4'O4'C1'H1'121.5°78.5°
O4'C4'C3'H3'78.1°116.7°
O4'C4'C5'H5'178.8°172.8°
O4'C4'C5'H5'A61.2°52.8°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.1°
C5'C4'C3'H3'42.2°2.7°
C4'C5'H5'H5'A119.3°120.0°
O5'C5'C4'H4'63.2°53.9°
O5'C5'H5'H5'A119.3°119.9°
CADCACCASOBF179.8°179.9°
CACCADCAJHAD180.0°179.9°
CADCACCASCAH0.0°0.1°
CACCADCAJCAK0.1°0.1°
CACCADCAJHAJ179.9°180.0°
CADCACCASHAS180.0°180.0°
CADCACOBFHOBF180.0°90.0°
CASCACCADCAJ0.0°0.1°
CACCASCAHCAK0.1°0.1°
CACCASCAHHAS180.0°179.9°
CASCACCADHAD180.0°180.0°
CACCASCAHHAH179.9°180.0°
CASCACOBFHOBF0.2°90.1°
OBFCACCADCAJ179.8°179.7°
OBFCACCASCAH179.8°179.8°
OBFCACCADHAD0.2°0.2°
OBFCACCASHAS0.2°0.2°
CADCAJCAKCAH0.1°0.0°
CADCAJCAKHAJ180.0°179.9°
CADCAJCAKCAP178.4°180.0°
CAKCAHCASHAH180.0°180.0°
CAHCAKCAJCAP178.6°180.0°
CAHCAKCAPCAQ128.2°90.0°
CAHCAKCAJHAJ179.9°180.0°
CAHCAKCAPHAP8.2°150.0°
CAHCAKCAPHAPA111.9°30.0°
CAKCAHCASHAS179.9°180.0°
CASCAHCAKCAJ0.1°0.0°
CASCAHCAKCAP178.5°180.0°
CAJCAKCAPCAQ53.2°90.0°
CAKCAJCADHAD179.9°180.0°
CAJCAKCAHHAH179.9°180.0°
CAJCAKCAPHAP173.3°30.0°
CAJCAKCAPHAPA66.7°150.0°
CAKCAPCAQHAP120.0°120.0°
CAKCAPCAQHAPA120.0°119.9°
CAKCAPCAQCAR173.5°180.0°
CAPCAKCAHHAH1.5°0.0°
CAPCAKCAJHAJ1.5°0.0°
CAKCAPHAPHAPA119.1°120.0°
CAKCAPCAQHAQ66.5°60.0°
CAKCAPCAQHAQA53.5°60.1°
CAPCAQCARHAQ120.0°120.0°
CAPCAQCARHAQA120.0°120.0°
CAQCAPHAPHAPA119.1°120.0°
CAPCAQHAQHAQA118.9°120.0°
CAPCAQCARHAR51.8°60.0°
CAPCAQCARHARA171.8°60.0°
CARCAQCAPHAP53.5°60.0°
CARCAQCAPHAPA66.5°60.0°
CARCAQHAQHAQA118.9°120.0°
CAQCARHARHARA119.3°120.0°
H1'C1'C2'H2'84.9°160.2°
H2'C2'O2'HO2'55.0°56.4°
H2'C2'C3'H3'43.2°21.5°
H3'C3'O3'HO3'53.3°61.0°
H3'C3'C4'H4'160.1°123.9°
H4'C4'C5'H5'56.8°66.1°
H4'C4'C5'H5'A176.7°173.9°
HADCADCAJHAJ0.1°0.1°
HAHCAHCASHAS0.1°0.1°
HAPCAPCAQHAQ173.5°180.0°
HAPCAPCAQHAQA66.5°60.0°
HAPACAPCAQHAQ53.5°60.0°
HAPACAPCAQHAQA173.4°180.0°
HAQCAQCARHAR171.8°60.0°
HAQCAQCARHARA68.2°180.0°
HAQACAQCARHAR68.2°180.0°
HAQACAQCARHARA51.8°60.0°

221716

PDB entries from 2024-06-26

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