AYA
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.46Å | 1.46Å | |
| N | CT | sing | 1.35Å | 1.34Å | |
| N | H | sing | 0.97Å | 0.98Å | |
| CA | CB | sing | 1.53Å | 1.52Å | |
| CA | C | sing | 1.51Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| CB | HB1 | sing | 1.09Å | 1.12Å | |
| CB | HB2 | sing | 1.09Å | 1.11Å | |
| CB | HB3 | sing | 1.09Å | 1.11Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.34Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| CT | OT | doub | 1.21Å | 1.23Å | |
| CT | CM | sing | 1.51Å | 1.52Å | |
| CM | HM1 | sing | 1.09Å | 1.12Å | |
| CM | HM2 | sing | 1.09Å | 1.12Å | |
| CM | HM3 | sing | 1.09Å | 1.11Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | CT | 121.4° | 120.0° |
| CA | N | H | 116.5° | 120.0° |
| N | CA | CB | 108.1° | 109.5° |
| N | CA | C | 116.5° | 109.5° |
| N | CA | HA | 105.4° | 109.5° |
| CT | N | H | 114.3° | 120.0° |
| N | CT | OT | 121.3° | 120.0° |
| N | CT | CM | 116.5° | 120.0° |
| CB | CA | C | 108.9° | 109.5° |
| CB | CA | HA | 113.6° | 109.4° |
| CA | CB | HB1 | 108.1° | 109.5° |
| CA | CB | HB2 | 112.7° | 109.4° |
| CA | CB | HB3 | 112.7° | 109.5° |
| C | CA | HA | 104.5° | 109.5° |
| CA | C | O | 120.4° | 120.0° |
| CA | C | OXT | 115.4° | 120.1° |
| HB1 | CB | HB2 | 112.8° | 109.5° |
| HB1 | CB | HB3 | 112.7° | 109.5° |
| HB2 | CB | HB3 | 97.8° | 109.4° |
| O | C | OXT | 124.2° | 119.9° |
| C | OXT | HXT | 115.4° | 120.1° |
| OT | CT | CM | 122.0° | 119.9° |
| CT | CM | HM1 | 116.5° | 109.5° |
| CT | CM | HM2 | 109.7° | 109.5° |
| CT | CM | HM3 | 109.7° | 109.4° |
| HM1 | CM | HM2 | 109.6° | 109.5° |
| HM1 | CM | HM3 | 109.7° | 109.4° |
| HM2 | CM | HM3 | 100.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | CT | H | 148.1° | 179.9° |
| N | CA | CB | C | 127.4° | 120.1° |
| N | CA | CB | HA | 116.6° | 119.9° |
| N | CA | C | HA | 115.8° | 120.0° |
| N | CA | CB | HB1 | 180.0° | 60.1° |
| N | CA | CB | HB2 | 54.7° | 180.0° |
| N | CA | CB | HB3 | 54.8° | 60.0° |
| N | CA | C | O | 152.0° | 0.0° |
| N | CA | C | OXT | 29.4° | 180.0° |
| CA | N | CT | OT | 50.7° | 0.0° |
| CA | N | CT | CM | 123.8° | 180.0° |
| CT | N | CA | CB | 173.6° | 89.9° |
| CT | N | CA | C | 63.5° | 150.0° |
| CT | N | CA | HA | 51.8° | 30.0° |
| N | CT | OT | CM | 174.3° | 179.9° |
| N | CT | CM | HM1 | 180.0° | 180.0° |
| N | CT | CM | HM2 | 54.8° | 59.9° |
| N | CT | CM | HM3 | 54.7° | 60.1° |
| H | N | CA | CB | 26.1° | 90.0° |
| H | N | CA | C | 149.0° | 30.0° |
| H | N | CA | HA | 95.6° | 150.1° |
| H | N | CT | OT | 97.4° | 180.0° |
| H | N | CT | CM | 88.0° | 0.1° |
| CB | CA | C | HA | 121.7° | 119.9° |
| CA | CB | HB1 | HB2 | 125.2° | 119.9° |
| CA | CB | HB1 | HB3 | 125.2° | 120.1° |
| CA | CB | HB2 | HB3 | 118.6° | 120.0° |
| CB | CA | C | O | 85.5° | 120.1° |
| CB | CA | C | OXT | 93.1° | 59.9° |
| C | CA | CB | HB1 | 52.5° | 60.0° |
| C | CA | CB | HB2 | 177.8° | 60.0° |
| C | CA | CB | HB3 | 72.7° | 179.9° |
| CA | C | O | OXT | 178.4° | 180.0° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| HA | CA | CB | HB1 | 63.5° | 180.0° |
| HA | CA | CB | HB2 | 61.8° | 60.0° |
| HA | CA | CB | HB3 | 171.3° | 59.9° |
| HA | CA | C | O | 36.2° | 120.0° |
| HA | CA | C | OXT | 145.3° | 60.0° |
| HB1 | CB | HB2 | HB3 | 118.7° | 120.0° |
| O | C | OXT | HXT | 1.6° | 0.0° |
| OT | CT | CM | HM1 | 5.4° | 0.1° |
| OT | CT | CM | HM2 | 119.8° | 120.0° |
| OT | CT | CM | HM3 | 130.7° | 120.0° |
| CT | CM | HM1 | HM2 | 125.2° | 120.1° |
| CT | CM | HM1 | HM3 | 125.3° | 119.9° |
| CT | CM | HM2 | HM3 | 115.5° | 119.9° |
| HM1 | CM | HM2 | HM3 | 115.5° | 120.0° |
