AXZ
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
O2S | S | sing | 1.66Å | 1.49Å | |
S | O1S | sing | 1.66Å | 1.50Å | |
S | C1 | sing | 1.81Å | 1.77Å | |
S | N | sing | 1.75Å | 1.66Å | |
C1 | C2 | doub | 1.38Å | 1.35Å | Aromatic |
C1 | C6 | sing | 1.38Å | 1.50Å | Aromatic |
C2 | C3 | sing | 1.38Å | 1.52Å | Aromatic |
C6 | C5 | doub | 1.38Å | 1.34Å | Aromatic |
C5 | C4 | sing | 1.38Å | 1.50Å | Aromatic |
C4 | C3 | doub | 1.38Å | 1.34Å | Aromatic |
C4 | C7 | sing | 1.51Å | 1.51Å | |
N | CA | sing | 1.47Å | 1.42Å | |
CA | CB | sing | 1.53Å | 1.49Å | |
CA | C | sing | 1.51Å | 1.50Å | |
CB | O9 | sing | 1.43Å | 1.39Å | |
C | O | doub | 1.21Å | 1.26Å | |
C | OXT | sing | 1.34Å | 1.26Å | |
O2S | H2S1 | sing | 0.97Å | 0.95Å | |
O1S | H1S1 | sing | 0.97Å | 0.95Å | |
C2 | H21 | sing | 1.08Å | 1.08Å | |
C6 | H61 | sing | 1.08Å | 1.08Å | |
C5 | H51 | sing | 1.08Å | 1.08Å | |
C3 | H31 | sing | 1.08Å | 1.08Å | |
C7 | H71 | sing | 1.09Å | 1.10Å | |
C7 | H72 | sing | 1.09Å | 1.10Å | |
N | H | sing | 1.01Å | 1.00Å | |
CA | HA | sing | 1.09Å | 1.10Å | |
CB | HB2 | sing | 1.09Å | 1.10Å | |
CB | HB3 | sing | 1.09Å | 1.10Å | |
OXT | H1 | sing | 0.97Å | 0.95Å | |
O9 | H91 | sing | 0.97Å | 0.95Å | |
C7 | C8 | sing | 1.53Å | 34.21Å | |
C8 | N1 | sing | 1.47Å | 0.00Å | |
C8 | H2 | sing | 1.09Å | 0.00Å | |
C8 | H3 | sing | 1.09Å | 0.00Å | |
N1 | H4 | sing | 1.01Å | 0.00Å | |
N1 | H5 | sing | 1.01Å | 0.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
O2S | S | O1S | 113.1° | 180.0° |
O2S | S | C1 | 106.7° | 90.0° |
O2S | S | N | 112.9° | 90.0° |
S | O2S | H2S1 | 109.5° | 114.0° |
O1S | S | C1 | 107.5° | 90.0° |
O1S | S | N | 107.9° | 90.0° |
S | O1S | H1S1 | 109.5° | 114.0° |
C1 | S | N | 108.6° | 120.0° |
S | C1 | C2 | 119.5° | 120.0° |
S | C1 | C6 | 118.5° | 120.0° |
S | N | CA | 111.6° | 110.9° |
S | N | H | 108.9° | 111.0° |
C2 | C1 | C6 | 122.0° | 120.0° |
C1 | C2 | C3 | 117.9° | 120.0° |
C1 | C2 | H21 | 121.1° | 120.0° |
C1 | C6 | C5 | 119.5° | 120.0° |
C1 | C6 | H61 | 120.2° | 120.0° |
C2 | C3 | C4 | 120.0° | 120.0° |
C3 | C2 | H21 | 121.1° | 120.0° |
C2 | C3 | H31 | 120.0° | 120.0° |
C6 | C5 | C4 | 119.5° | 120.0° |
C5 | C6 | H61 | 120.2° | 120.0° |
C6 | C5 | H51 | 120.3° | 120.0° |
C5 | C4 | C3 | 121.1° | 120.0° |
C5 | C4 | C7 | 118.3° | 120.0° |
C4 | C5 | H51 | 120.3° | 120.0° |
C3 | C4 | C7 | 120.6° | 120.0° |
C4 | C3 | H31 | 120.0° | 120.0° |
C4 | C7 | H71 | 122.9° | 109.5° |
C4 | C7 | H72 | 122.9° | 109.5° |
C4 | C7 | C8 | 39.7° | 109.4° |
N | CA | CB | 105.4° | 109.4° |
N | CA | C | 110.0° | 109.5° |
CA | N | H | 109.0° | 111.0° |
N | CA | HA | 113.3° | 109.5° |
CB | CA | C | 103.8° | 109.5° |
CA | CB | O9 | 112.4° | 109.4° |
CB | CA | HA | 112.0° | 109.4° |
CA | CB | HB2 | 108.7° | 109.4° |
CA | CB | HB3 | 108.7° | 109.5° |
CA | C | O | 121.7° | 120.0° |
CA | C | OXT | 118.9° | 120.0° |
C | CA | HA | 111.8° | 109.5° |
O9 | CB | HB2 | 108.7° | 109.5° |
O9 | CB | HB3 | 108.7° | 109.5° |
CB | O9 | H91 | 109.5° | 114.0° |
O | C | OXT | 119.4° | 120.0° |
C | OXT | H1 | 109.5° | 117.0° |
H71 | C7 | H72 | 109.5° | 109.5° |
H71 | C7 | C8 | 122.9° | 109.4° |
H72 | C7 | C8 | 122.9° | 109.5° |
HB2 | CB | HB3 | 109.5° | 109.5° |
C7 | C8 | N1 | 90.0° | 109.5° |
C7 | C8 | H2 | 90.0° | 109.5° |
C7 | C8 | H3 | 90.0° | 109.5° |
N1 | C8 | H2 | 90.0° | 109.5° |
N1 | C8 | H3 | 90.0° | 109.4° |
C8 | N1 | H4 | 90.0° | 111.0° |
C8 | N1 | H5 | 90.0° | 111.0° |
H2 | C8 | H3 | 90.0° | 109.5° |
H4 | N1 | H5 | 90.0° | 110.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
O2S | S | O1S | C1 | 117.5° | 11.6° |
O2S | S | O1S | N | 125.6° | 131.6° |
O2S | S | C1 | N | 122.0° | 90.0° |
O2S | S | C1 | C2 | 27.7° | 90.0° |
O2S | S | C1 | C6 | 151.7° | 89.7° |
O2S | S | N | CA | 54.1° | 90.0° |
O2S | S | O1S | H1S1 | 180.0° | 168.4° |
O2S | S | N | H | 66.2° | 146.0° |
O1S | S | C1 | N | 116.5° | 90.0° |
O1S | S | C1 | C2 | 93.9° | 90.0° |
O1S | S | C1 | C6 | 86.7° | 90.3° |
O1S | S | N | CA | 179.8° | 90.0° |
O1S | S | O2S | H2S1 | 180.0° | 168.3° |
O1S | S | N | H | 59.5° | 34.0° |
S | C1 | C2 | C6 | 179.4° | 179.7° |
S | C1 | C2 | C3 | 179.5° | 180.0° |
S | C1 | C6 | C5 | 180.0° | 180.0° |
C1 | S | N | CA | 64.0° | 180.0° |
C1 | S | O2S | H2S1 | 62.1° | 179.9° |
C1 | S | O1S | H1S1 | 62.5° | 180.0° |
S | C1 | C2 | H21 | 0.5° | 0.1° |
S | C1 | C6 | H61 | 0.0° | 0.1° |
C1 | S | N | H | 175.7° | 56.0° |
N | S | C1 | C2 | 149.7° | 180.0° |
N | S | C1 | C6 | 29.8° | 0.3° |
S | N | CA | H | 120.3° | 123.9° |
S | N | CA | CB | 90.1° | 145.0° |
S | N | CA | C | 158.6° | 95.0° |
N | S | O2S | H2S1 | 57.2° | 60.1° |
N | S | O1S | H1S1 | 54.4° | 60.0° |
S | N | CA | HA | 32.6° | 25.0° |
C1 | C2 | C3 | H21 | 180.0° | 179.9° |
C2 | C1 | C6 | C5 | 0.6° | 0.3° |
C1 | C2 | C3 | C4 | 0.9° | 0.0° |
C2 | C1 | C6 | H61 | 179.4° | 179.6° |
C1 | C2 | C3 | H31 | 179.1° | 180.0° |
C6 | C1 | C2 | C3 | 1.1° | 0.3° |
C1 | C6 | C5 | H61 | 180.0° | 179.9° |
C1 | C6 | C5 | C4 | 0.3° | 0.1° |
C6 | C1 | C2 | H21 | 178.9° | 179.8° |
C1 | C6 | C5 | H51 | 179.7° | 179.9° |
C2 | C3 | C4 | C5 | 0.0° | 0.3° |
C2 | C3 | C4 | H31 | 180.0° | 180.0° |
C2 | C3 | C4 | C7 | 179.2° | 179.9° |
C6 | C5 | C4 | H51 | 180.0° | 180.0° |
C6 | C5 | C4 | C3 | 0.6° | 0.4° |
C6 | C5 | C4 | C7 | 179.8° | 180.0° |
C5 | C4 | C3 | C7 | 179.3° | 179.6° |
C4 | C5 | C6 | H61 | 179.7° | 180.0° |
C5 | C4 | C3 | H31 | 180.0° | 179.7° |
C5 | C4 | C7 | H71 | 107.0° | 150.0° |
C5 | C4 | C7 | H72 | 46.1° | 29.9° |
C5 | C4 | C7 | C8 | 149.5° | 90.1° |
C4 | C3 | C2 | H21 | 179.1° | 179.9° |
C3 | C4 | C5 | H51 | 179.4° | 179.6° |
C3 | C4 | C7 | H71 | 72.3° | 29.6° |
C3 | C4 | C7 | H72 | 134.7° | 149.6° |
C3 | C4 | C7 | C8 | 31.2° | 90.4° |
C7 | C4 | C5 | H51 | 0.1° | 0.0° |
C7 | C4 | C3 | H31 | 0.8° | 0.1° |
C4 | C7 | H71 | H72 | 156.2° | 120.1° |
C4 | C7 | H71 | C8 | 47.7° | 120.0° |
C4 | C7 | H72 | C8 | 47.7° | 120.0° |
C4 | C7 | C8 | N1 | 90.0° | 180.0° |
C4 | C7 | C8 | H2 | 90.0° | 60.0° |
C4 | C7 | C8 | H3 | 90.0° | 60.0° |
N | CA | CB | C | 115.6° | 120.0° |
N | CA | CB | HA | 123.5° | 120.0° |
N | CA | C | HA | 126.7° | 120.1° |
N | CA | CB | O9 | 156.7° | 65.0° |
N | CA | C | O | 146.3° | 0.1° |
N | CA | C | OXT | 36.0° | 180.0° |
N | CA | CB | HB2 | 36.2° | 175.1° |
N | CA | CB | HB3 | 82.9° | 55.0° |
CB | CA | C | HA | 120.9° | 120.0° |
CA | CB | O9 | HB2 | 120.4° | 119.9° |
CA | CB | O9 | HB3 | 120.4° | 120.0° |
CB | CA | C | O | 101.4° | 120.0° |
CB | CA | C | OXT | 76.4° | 60.0° |
CB | CA | N | H | 30.2° | 21.1° |
CA | CB | HB2 | HB3 | 118.6° | 120.0° |
CA | CB | O9 | H91 | 180.0° | 180.0° |
C | CA | CB | O9 | 87.7° | 55.0° |
CA | C | O | OXT | 177.7° | 180.0° |
C | CA | N | H | 81.1° | 141.1° |
C | CA | CB | HB2 | 151.9° | 65.0° |
C | CA | CB | HB3 | 32.8° | 175.0° |
CA | C | OXT | H1 | 177.8° | 180.0° |
O9 | CB | CA | HA | 33.1° | 175.0° |
O9 | CB | HB2 | HB3 | 118.7° | 120.0° |
O | C | CA | HA | 19.5° | 120.0° |
O | C | OXT | H1 | 0.0° | 0.0° |
OXT | C | CA | HA | 162.7° | 59.9° |
H21 | C2 | C3 | H31 | 0.9° | 0.1° |
H61 | C6 | C5 | H51 | 0.3° | 0.0° |
H71 | C7 | H72 | C8 | 156.2° | 120.0° |
H71 | C7 | C8 | N1 | 90.0° | 60.0° |
H71 | C7 | C8 | H2 | 90.0° | 180.0° |
H71 | C7 | C8 | H3 | 90.0° | 60.0° |
H72 | C7 | C8 | N1 | 90.0° | 60.0° |
H72 | C7 | C8 | H2 | 90.0° | 60.0° |
H72 | C7 | C8 | H3 | 90.0° | 180.0° |
H | N | CA | HA | 153.0° | 98.9° |
HA | CA | CB | HB2 | 87.3° | 55.0° |
HA | CA | CB | HB3 | 153.6° | 65.0° |
HB2 | CB | O9 | H91 | 59.6° | 60.1° |
HB3 | CB | O9 | H91 | 59.6° | 60.0° |
C7 | C8 | N1 | H2 | 90.0° | 120.0° |
C7 | C8 | N1 | H3 | 90.0° | 120.0° |
C7 | C8 | H2 | H3 | 90.0° | 120.0° |
C7 | C8 | N1 | H4 | 90.0° | 56.1° |
C7 | C8 | N1 | H5 | 90.0° | 179.9° |
N1 | C8 | H2 | H3 | 90.0° | 120.0° |
C8 | N1 | H4 | H5 | 90.0° | 123.9° |
H2 | C8 | N1 | H4 | 90.0° | 63.9° |
H2 | C8 | N1 | H5 | 90.0° | 60.0° |
H3 | C8 | N1 | H4 | 90.0° | 176.1° |
H3 | C8 | N1 | H5 | 90.0° | 60.0° |