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AVW

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O3PAsing1.61Å1.65Å
O5'APAsing1.61Å1.66Å
PAO1Adoub1.48Å1.52Å
PAO2Asing1.61Å1.51Å
O5'NPNsing1.61Å1.62Å
O1NPNdoub1.48Å1.48Å
O2NPNsing1.61Å1.52Å
PNO3sing1.61Å1.59Å
C6AN1Adoub1.33Å1.38ÅAromatic
C2AN1Asing1.32Å1.36ÅAromatic
N3AC2Adoub1.32Å1.36ÅAromatic
C2AHC2sing1.08Å1.08Å
O2AHAO2sing0.97Å0.95Å
O2NHNO2sing0.97Å0.95Å
C4AN3Asing1.33Å1.38ÅAromatic
N9AC4Asing1.37Å1.37ÅAromatic
C4AC5Adoub1.40Å1.40ÅAromatic
N7AC5Asing1.35Å1.35ÅAromatic
C5AC6Asing1.41Å1.41ÅAromatic
C6AN6Asing1.38Å1.37Å
N6AHAN6sing0.97Å1.00Å
N6AHANAsing0.97Å1.00Å
C8AN7Adoub1.30Å1.36ÅAromatic
C8AN9Asing1.36Å1.35ÅAromatic
C8AHC8sing1.08Å1.08Å
C1'AN9Asing1.47Å1.52Å
C1'AC2'Asing1.55Å1.56Å
C1'AO4'Asing1.44Å1.44Å
C1'AHC1'sing1.09Å1.10Å
C1'NC2'Nsing1.54Å1.50Å
C1'NO4'Nsing1.44Å1.43Å
C1'NHC1Asing1.09Å1.10Å
C1'NHC1Bsing1.09Å1.10Å
O2'AC2'Asing1.43Å1.45Å
C2'AC3'Asing1.55Å1.52Å
C2'AHC2'sing1.09Å1.10Å
O2'AHO2'sing0.97Å0.95Å
F2'NC2'Nsing1.40Å1.37Å
C2'NC3'Nsing1.55Å1.52Å
C2'NHC2Asing1.09Å1.10Å
O3'AC3'Asing1.43Å1.45Å
C3'AC4'Asing1.54Å1.53Å
C3'AHC3'sing1.09Å1.10Å
O3'AHO3'sing0.97Å0.95Å
O3'NC3'Nsing1.43Å1.36Å
C3'NC4'Nsing1.55Å1.52Å
C3'NHC3Asing1.09Å1.10Å
O3'NHO3Asing0.97Å0.95Å
O4'AC4'Asing1.44Å1.44Å
C4'AC5'Asing1.53Å1.52Å
C4'AHC4'sing1.09Å1.10Å
O4'NC4'Nsing1.44Å1.44Å
C4'NC5'Nsing1.53Å1.52Å
C4'NHC4Asing1.09Å1.10Å
C5'AO5'Asing1.43Å1.43Å
C5'AHC5'sing1.09Å1.10Å
C5'AHC5Asing1.09Å1.10Å
C5'NO5'Nsing1.43Å1.44Å
C5'NHC5Bsing1.09Å1.10Å
C5'NHC5Csing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O3PAO5'A104.2°109.5°
O3PAO1A112.4°109.4°
O3PAO2A106.4°109.5°
PAO3PN117.6°134.0°
O5'APAO1A109.7°109.4°
O5'APAO2A111.6°109.5°
PAO5'AC5'A112.3°123.0°
O1APAO2A112.2°109.5°
PAO2AHAO2109.5°114.0°
O5'NPNO1N109.7°109.5°
O5'NPNO2N103.0°109.5°
O5'NPNO3109.8°109.5°
PNO5'NC5'N118.9°123.0°
O1NPNO2N118.0°109.5°
O1NPNO3105.7°109.5°
O2NPNO3110.6°109.5°
PNO2NHNO2109.5°114.0°
C6AN1AC2A119.7°121.2°
N1AC6AC5A119.7°118.5°
N1AC6AN6A121.5°120.8°
N1AC2AN3A121.1°122.5°
N1AC2AHC2119.4°118.7°
N3AC2AHC2119.5°118.8°
C2AN3AC4A122.0°120.6°
N3AC4AN9A134.3°134.9°
N3AC4AC5A117.5°119.1°
N9AC4AC5A108.3°106.0°
C4AN9AC8A106.3°107.4°
C4AN9AC1'A128.1°126.3°
C4AC5AN7A107.0°107.2°
C4AC5AC6A120.0°118.1°
N7AC5AC6A133.0°134.7°
C5AN7AC8A108.0°109.4°
C5AC6AN6A118.7°120.7°
C6AN6AHAN6109.5°120.1°
C6AN6AHANA109.5°120.0°
HAN6N6AHANA109.5°120.0°
N7AC8AN9A110.4°110.0°
N7AC8AHC8124.8°125.0°
N9AC8AHC8124.8°125.0°
C8AN9AC1'A125.6°126.3°
N9AC1'AC2'A114.4°110.6°
N9AC1'AO4'A109.9°110.6°
N9AC1'AHC1'104.9°110.6°
C2'AC1'AO4'A106.7°103.5°
C2'AC1'AHC1'108.2°110.6°
C1'AC2'AO2'A116.1°111.0°
C1'AC2'AC3'A107.4°102.1°
C1'AC2'AHC2'105.9°110.9°
O4'AC1'AHC1'112.9°110.7°
C1'AO4'AC4'A111.3°107.0°
C2'NC1'NO4'N108.1°107.3°
C2'NC1'NHC1A109.9°109.8°
C2'NC1'NHC1B110.0°109.9°
C1'NC2'NF2'N106.7°110.4°
C1'NC2'NC3'N104.9°104.2°
C1'NC2'NHC2A115.9°110.5°
O4'NC1'NHC1A110.0°109.8°
O4'NC1'NHC1B109.9°109.9°
C1'NO4'NC4'N112.3°107.0°
HC1AC1'NHC1B109.0°110.0°
O2'AC2'AC3'A107.8°110.9°
O2'AC2'AHC2'105.5°110.8°
C2'AO2'AHO2'109.5°114.0°
C3'AC2'AHC2'114.5°110.9°
C2'AC3'AO3'A110.0°110.5°
C2'AC3'AC4'A104.8°104.2°
C2'AC3'AHC3'113.7°110.5°
F2'NC2'NC3'N114.3°110.5°
F2'NC2'NHC2A106.8°110.6°
C3'NC2'NHC2A108.5°110.5°
C2'NC3'NO3'N111.0°110.9°
C2'NC3'NC4'N108.2°102.1°
C2'NC3'NHC3A108.2°110.9°
O3'AC3'AC4'A113.5°110.5°
O3'AC3'AHC3'104.9°110.5°
C3'AO3'AHO3'109.5°114.0°
C4'AC3'AHC3'110.1°110.5°
C3'AC4'AO4'A109.6°107.3°
C3'AC4'AC5'A112.1°109.9°
C3'AC4'AHC4'106.3°109.9°
O3'NC3'NC4'N105.9°110.9°
O3'NC3'NHC3A110.4°110.8°
C3'NO3'NHO3A109.5°114.0°
C4'NC3'NHC3A113.1°110.9°
C3'NC4'NO4'N104.4°103.5°
C3'NC4'NC5'N105.8°110.6°
C3'NC4'NHC4A114.7°110.6°
O4'AC4'AC5'A105.2°109.9°
O4'AC4'AHC4'113.1°110.0°
C5'AC4'AHC4'110.6°109.9°
C4'AC5'AO5'A112.7°109.5°
C4'AC5'AHC5'108.4°109.5°
C4'AC5'AHC5A108.4°109.5°
O4'NC4'NC5'N108.6°110.6°
O4'NC4'NHC4A112.1°110.7°
C5'NC4'NHC4A110.8°110.5°
C4'NC5'NO5'N113.3°109.5°
C4'NC5'NHC5B108.2°109.5°
C4'NC5'NHC5C108.3°109.5°
O5'AC5'AHC5'108.4°109.5°
O5'AC5'AHC5A108.4°109.5°
HC5'C5'AHC5A110.5°109.5°
O5'NC5'NHC5B108.2°109.5°
O5'NC5'NHC5C108.2°109.5°
HC5BC5'NHC5C110.7°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O3PAO5'AO1A120.6°119.9°
O3PAO5'AO2A114.5°120.0°
O3PAO1AO2A119.9°120.0°
PAO3PNO5'N106.7°160.0°
PAO3PNO1N135.1°40.0°
PAO3PNO2N6.3°80.0°
O3PAO2AHAO2123.3°60.1°
O3PAO5'AC5'A129.3°175.0°
O5'APAO1AO2A124.7°120.0°
O5'APAO3PN18.7°165.0°
O5'APAO2AHAO2123.6°60.0°
PAO5'AC5'AC4'A114.4°180.0°
PAO5'AC5'AHC5'5.7°60.0°
PAO5'AC5'AHC5A125.6°60.0°
O1APAO3PN100.0°45.0°
O1APAO2AHAO20.0°180.0°
O1APAO5'AC5'A8.7°55.0°
O2APAO3PN136.8°75.0°
O2APAO5'AC5'A116.3°65.0°
O5'NPNO1NO2N117.5°120.0°
O5'NPNO1NO3118.3°120.0°
O5'NPNO2NO3117.2°120.0°
O5'NPNO2NHNO2121.0°60.0°
PNO5'NC5'NC4'N104.2°180.0°
PNO5'NC5'NHC5B15.9°60.0°
PNO5'NC5'NHC5C135.8°60.0°
O1NPNO2NO3121.8°120.0°
O1NPNO2NHNO20.0°180.0°
O1NPNO5'NC5'N51.4°55.0°
O2NPNO5'NC5'N177.8°65.0°
O3PNO2NHNO2121.8°60.0°
O3PNO5'NC5'N64.4°175.0°
C6AN1AC2AN3A0.4°0.1°
C6AN1AC2AHC2179.6°180.0°
N1AC6AC5AC4A0.2°0.0°
N1AC6AC5AN7A179.8°179.9°
N1AC6AC5AN6A179.5°179.9°
N1AC6AN6AHAN60.0°180.0°
N1AC6AN6AHANA120.0°0.1°
N1AC2AN3AHC2180.0°180.0°
N1AC2AN3AC4A0.5°0.0°
C2AN1AC6AC5A0.3°0.1°
C2AN1AC6AN6A179.7°180.0°
C2AN3AC4AN9A179.9°180.0°
C2AN3AC4AC5A0.5°0.1°
HC2C2AN3AC4A179.5°180.0°
N3AC4AN9AC5A179.7°179.9°
N3AC4AC5AN7A179.7°180.0°
N3AC4AC5AC6A0.3°0.1°
N3AC4AN9AC8A179.1°180.0°
N3AC4AN9AC1'A1.0°0.1°
N9AC4AC5AN7A0.1°0.1°
N9AC4AC5AC6A179.9°180.0°
C4AN9AC8AN7A0.9°0.0°
C4AN9AC8AC1'A179.9°180.0°
C4AN9AC8AHC8179.1°180.0°
C4AN9AC1'AC2'A82.4°85.0°
C4AN9AC1'AO4'A37.6°160.9°
C4AN9AC1'AHC1'159.2°37.9°
C4AC5AN7AC6A180.0°179.9°
C4AC5AC6AN6A179.7°179.9°
C4AC5AN7AC8A0.4°0.0°
C5AC4AN9AC8A0.6°0.0°
C5AC4AN9AC1'A179.3°180.0°
N7AC5AC6AN6A0.3°0.0°
C5AN7AC8AN9A0.8°0.0°
C5AN7AC8AHC8179.2°180.0°
C5AC6AN6AHAN6179.5°0.1°
C5AC6AN6AHANA60.5°180.0°
C6AC5AN7AC8A179.5°180.0°
C6AN6AHAN6HANA120.0°179.9°
N7AC8AN9AHC8180.0°180.0°
N7AC8AN9AC1'A179.0°180.0°
C8AN9AC1'AC2'A97.5°95.0°
C8AN9AC1'AO4'A142.6°19.0°
C8AN9AC1'AHC1'21.0°142.1°
HC8C8AN9AC1'A1.0°0.0°
N9AC1'AC2'AO4'A121.7°118.5°
N9AC1'AC2'AHC1'116.5°122.9°
N9AC1'AO4'AHC1'116.7°122.9°
N9AC1'AC2'AO2'A122.9°86.3°
N9AC1'AC2'AC3'A116.5°155.5°
N9AC1'AC2'AHC2'6.2°37.3°
N9AC1'AO4'AC4'A119.9°158.6°
C2'AC1'AO4'AHC1'118.7°118.6°
C1'AC2'AO2'AC3'A120.4°112.7°
C1'AC2'AO2'AHC2'116.9°123.7°
C1'AC2'AC3'AHC2'117.3°118.2°
C1'AC2'AO2'AHO2'180.0°180.0°
C1'AC2'AC3'AO3'A126.1°97.8°
C1'AC2'AC3'AC4'A3.8°20.9°
C1'AC2'AC3'AHC3'116.5°139.6°
C2'AC1'AO4'AC4'A4.6°40.1°
O4'AC1'AC2'AO2'A115.4°155.2°
O4'AC1'AC2'AC3'A5.2°37.0°
O4'AC1'AC2'AHC2'128.0°81.1°
C1'AO4'AC4'AC3'A2.3°26.5°
C1'AO4'AC4'AC5'A118.4°145.9°
C1'AO4'AC4'AHC4'120.7°92.9°
HC1'C1'AC2'AO2'A6.4°36.6°
HC1'C1'AC2'AC3'A126.9°81.6°
HC1'C1'AC2'AHC2'110.3°160.2°
HC1'C1'AO4'AC4'A123.4°78.5°
C2'NC1'NO4'NHC1A120.0°119.4°
C2'NC1'NO4'NHC1B120.0°119.5°
C2'NC1'NHC1AHC1B120.6°121.2°
C1'NC2'NF2'NC3'N115.5°114.7°
C1'NC2'NF2'NHC2A124.5°122.6°
C1'NC2'NC3'NHC2A124.4°118.7°
C1'NC2'NC3'NO3'N112.9°139.1°
C1'NC2'NC3'NC4'N2.9°20.8°
C1'NC2'NC3'NHC3A125.8°97.4°
C2'NC1'NO4'NC4'N13.8°26.5°
O4'NC1'NHC1AHC1B120.6°121.1°
O4'NC1'NC2'NF2'N115.6°120.7°
O4'NC1'NC2'NC3'N6.1°2.1°
O4'NC1'NC2'NHC2A125.7°116.6°
C1'NO4'NC4'NC3'N15.1°40.1°
C1'NO4'NC4'NC5'N97.4°158.6°
C1'NO4'NC4'NHC4A139.8°78.5°
HC1AC1'NC2'NF2'N124.4°119.9°
HC1AC1'NC2'NC3'N113.9°121.4°
HC1AC1'NC2'NHC2A5.7°2.7°
HC1AC1'NO4'NC4'N106.3°145.9°
HC1BC1'NC2'NF2'N4.4°1.3°
HC1BC1'NC2'NC3'N126.1°117.4°
HC1BC1'NC2'NHC2A114.3°123.9°
HC1BC1'NO4'NC4'N133.8°93.0°
O2'AC2'AC3'AHC2'117.0°123.6°
O2'AC2'AC3'AO3'A0.5°20.4°
O2'AC2'AC3'AC4'A121.9°139.1°
O2'AC2'AC3'AHC3'117.8°102.2°
C3'AC2'AO2'AHO2'59.6°67.3°
C2'AC3'AO3'AC4'A117.0°114.8°
C2'AC3'AO3'AHC3'122.6°122.6°
C2'AC3'AC4'AHC3'122.6°118.7°
C2'AC3'AO3'AHO3'180.0°61.4°
C2'AC3'AC4'AO4'A1.1°2.1°
C2'AC3'AC4'AC5'A117.6°121.5°
C2'AC3'AC4'AHC4'121.4°117.5°
HC2'C2'AO2'AHO2'63.1°56.3°
HC2'C2'AC3'AO3'A116.6°144.0°
HC2'C2'AC3'AC4'A121.0°97.3°
HC2'C2'AC3'AHC3'0.8°21.4°
F2'NC2'NC3'NHC2A119.0°122.7°
F2'NC2'NC3'NO3'N3.7°20.4°
F2'NC2'NC3'NC4'N119.5°97.8°
F2'NC2'NC3'NHC3A117.6°144.0°
C2'NC3'NO3'NC4'N117.2°112.7°
C2'NC3'NO3'NHC3A120.0°123.6°
C2'NC3'NC4'NHC3A119.9°118.2°
C2'NC3'NO3'NHO3A180.0°61.4°
C2'NC3'NC4'NO4'N10.6°37.0°
C2'NC3'NC4'NC5'N103.9°155.5°
C2'NC3'NC4'NHC4A133.7°81.6°
HC2AC2'NC3'NO3'N122.7°102.2°
HC2AC2'NC3'NC4'N121.5°139.6°
HC2AC2'NC3'NHC3A1.4°21.3°
O3'AC3'AC4'AHC3'117.3°122.6°
O3'AC3'AC4'AO4'A121.1°120.7°
O3'AC3'AC4'AC5'A122.4°119.8°
O3'AC3'AC4'AHC4'1.4°1.2°
C4'AC3'AO3'AHO3'63.0°176.2°
C3'AC4'AO4'AC5'A120.8°119.4°
C3'AC4'AO4'AHC4'118.4°119.5°
C3'AC4'AC5'AHC4'118.5°121.0°
C3'AC4'AC5'AO5'A159.2°175.0°
C3'AC4'AC5'AHC5'39.2°55.0°
C3'AC4'AC5'AHC5A80.8°65.0°
HC3'C3'AO3'AHO3'57.4°61.2°
HC3'C3'AC4'AO4'A121.5°116.6°
HC3'C3'AC4'AC5'A5.0°2.8°
HC3'C3'AC4'AHC4'116.0°123.8°
O3'NC3'NC4'NHC3A121.1°123.6°
O3'NC3'NC4'NO4'N108.5°155.2°
O3'NC3'NC4'NC5'N137.0°86.3°
O3'NC3'NC4'NHC4A14.6°36.6°
C4'NC3'NO3'NHO3A62.8°174.1°
C3'NC4'NO4'NC5'N112.5°118.5°
C3'NC4'NO4'NHC4A124.7°118.6°
C3'NC4'NC5'NHC4A124.8°122.9°
C3'NC4'NC5'NO5'N147.5°175.0°
C3'NC4'NC5'NHC5B92.5°55.0°
C3'NC4'NC5'NHC5C27.5°65.0°
HC3AC3'NO3'NHO3A60.0°62.3°
HC3AC3'NC4'NO4'N130.5°81.2°
HC3AC3'NC4'NC5'N15.9°37.3°
HC3AC3'NC4'NHC4A106.5°160.2°
O4'AC4'AC5'AHC4'122.4°121.2°
O4'AC4'AC5'AO5'A81.7°67.2°
O4'AC4'AC5'AHC5'158.3°172.8°
O4'AC4'AC5'AHC5A38.3°52.8°
C4'AC5'AO5'AHC5'120.0°120.0°
C4'AC5'AO5'AHC5A120.0°120.0°
C4'AC5'AHC5'HC5A118.7°120.0°
HC4'C4'AC5'AO5'A40.7°54.0°
HC4'C4'AC5'AHC5'79.3°66.0°
HC4'C4'AC5'AHC5A160.7°174.0°
O4'NC4'NC5'NHC4A123.5°123.0°
O4'NC4'NC5'NO5'N35.9°70.9°
O4'NC4'NC5'NHC5B155.9°169.1°
O4'NC4'NC5'NHC5C84.1°49.1°
C4'NC5'NO5'NHC5B120.0°120.0°
C4'NC5'NO5'NHC5C120.0°120.0°
C4'NC5'NHC5BHC5C118.5°120.0°
HC4AC4'NC5'NO5'N87.7°52.1°
HC4AC4'NC5'NHC5B32.3°67.9°
HC4AC4'NC5'NHC5C152.3°172.1°
O5'AC5'AHC5'HC5A118.7°120.0°
O5'NC5'NHC5BHC5C118.4°120.0°

222415

PDB entries from 2024-07-10

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