AVP
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| PA | O1A | doub | 1.48Å | 1.48Å | |
| PA | O2A | sing | 1.61Å | 1.48Å | |
| PA | O5' | sing | 1.61Å | 1.59Å | |
| PA | O3A | sing | 1.61Å | 1.61Å | |
| O2A | H2A1 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H'51 | sing | 1.09Å | 1.12Å | |
| C5' | H'52 | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.43Å | 1.46Å | |
| C4' | H'41 | sing | 1.09Å | 1.11Å | |
| C4' | H'42 | sing | 1.09Å | 1.12Å | |
| O4' | C1' | sing | 1.43Å | 1.42Å | |
| C1' | N9 | sing | 1.46Å | 1.46Å | |
| C1' | H'11 | sing | 1.09Å | 1.12Å | |
| C1' | H'12 | sing | 1.09Å | 1.11Å | |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| C4 | N3 | sing | 1.34Å | 1.35Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| N3 | C2 | doub | 1.31Å | 1.32Å | Aromatic |
| C2 | N2 | sing | 1.37Å | 1.33Å | |
| C2 | N1 | sing | 1.36Å | 1.37Å | Aromatic |
| N2 | HN21 | sing | 0.97Å | 1.02Å | |
| N2 | HN22 | sing | 0.97Å | 1.02Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | Aromatic |
| N1 | HN11 | sing | 0.97Å | 1.02Å | |
| C6 | O6 | doub | 1.22Å | 1.24Å | |
| C6 | C5 | sing | 1.41Å | 1.43Å | Aromatic |
| C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
| N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
| C8 | HC81 | sing | 1.08Å | 1.10Å | |
| O3A | PB | sing | 1.61Å | 1.62Å | |
| PB | O1B | doub | 1.48Å | 1.48Å | |
| PB | O2B | sing | 1.61Å | 1.48Å | |
| PB | O3B | sing | 1.61Å | 1.62Å | |
| O2B | H2B1 | sing | 0.97Å | 0.95Å | |
| O3B | PG | sing | 1.61Å | 1.62Å | |
| PG | O1G | sing | 1.61Å | 1.48Å | |
| PG | O2G | sing | 1.61Å | 1.49Å | |
| PG | O3G | doub | 1.48Å | 1.60Å | |
| O1G | H1G1 | sing | 0.97Å | 0.95Å | |
| O2G | H2G1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1A | PA | O2A | 119.8° | 109.4° |
| O1A | PA | O5' | 106.7° | 109.5° |
| O1A | PA | O3A | 108.9° | 109.5° |
| O2A | PA | O5' | 109.0° | 109.4° |
| O2A | PA | O3A | 109.6° | 109.4° |
| PA | O2A | H2A1 | 119.8° | 106.8° |
| O5' | PA | O3A | 101.1° | 109.5° |
| PA | O5' | C5' | 121.6° | 106.8° |
| PA | O3A | PB | 134.5° | 106.8° |
| O5' | C5' | C4' | 109.7° | 109.4° |
| O5' | C5' | H'51 | 112.2° | 109.5° |
| O5' | C5' | H'52 | 112.1° | 109.5° |
| C4' | C5' | H'51 | 112.1° | 109.4° |
| C4' | C5' | H'52 | 112.1° | 109.5° |
| C5' | C4' | O4' | 109.5° | 109.5° |
| C5' | C4' | H'41 | 112.2° | 109.5° |
| C5' | C4' | H'42 | 112.2° | 109.5° |
| H'51 | C5' | H'52 | 98.3° | 109.5° |
| O4' | C4' | H'41 | 112.2° | 109.4° |
| O4' | C4' | H'42 | 112.2° | 109.5° |
| C4' | O4' | C1' | 109.4° | 106.8° |
| H'41 | C4' | H'42 | 98.2° | 109.4° |
| O4' | C1' | N9 | 109.4° | 109.5° |
| O4' | C1' | H'11 | 112.2° | 109.4° |
| O4' | C1' | H'12 | 112.2° | 109.6° |
| N9 | C1' | H'11 | 112.3° | 109.4° |
| N9 | C1' | H'12 | 112.2° | 109.5° |
| C1' | N9 | C4 | 125.7° | 126.3° |
| C1' | N9 | C8 | 128.0° | 126.2° |
| H'11 | C1' | H'12 | 98.2° | 109.4° |
| C4 | N9 | C8 | 106.3° | 107.5° |
| N9 | C4 | N3 | 125.8° | 134.3° |
| N9 | C4 | C5 | 105.5° | 106.1° |
| N9 | C8 | N7 | 113.2° | 109.8° |
| N9 | C8 | HC81 | 125.5° | 125.1° |
| N3 | C4 | C5 | 128.7° | 119.6° |
| C4 | N3 | C2 | 112.0° | 121.2° |
| C4 | C5 | C6 | 118.7° | 118.6° |
| C4 | C5 | N7 | 110.9° | 107.2° |
| N3 | C2 | N2 | 119.7° | 119.1° |
| N3 | C2 | N1 | 124.0° | 121.9° |
| N2 | C2 | N1 | 116.3° | 119.0° |
| C2 | N2 | HN21 | 119.7° | 120.0° |
| C2 | N2 | HN22 | 108.5° | 120.0° |
| C2 | N1 | C6 | 125.2° | 120.3° |
| C2 | N1 | HN11 | 116.5° | 119.9° |
| HN21 | N2 | HN22 | 108.5° | 120.0° |
| C6 | N1 | HN11 | 118.4° | 119.8° |
| N1 | C6 | O6 | 119.7° | 120.8° |
| N1 | C6 | C5 | 111.4° | 118.3° |
| O6 | C6 | C5 | 128.9° | 120.8° |
| C6 | C5 | N7 | 130.4° | 134.2° |
| C5 | N7 | C8 | 104.1° | 109.3° |
| N7 | C8 | HC81 | 121.3° | 125.1° |
| O3A | PB | O1B | 106.5° | 109.5° |
| O3A | PB | O2B | 109.9° | 109.5° |
| O3A | PB | O3B | 105.2° | 109.5° |
| O1B | PB | O2B | 119.2° | 109.5° |
| O1B | PB | O3B | 104.6° | 109.5° |
| O2B | PB | O3B | 110.5° | 109.4° |
| PB | O2B | H2B1 | 110.0° | 106.8° |
| PB | O3B | PG | 132.9° | 106.8° |
| O3B | PG | O1G | 108.2° | 109.5° |
| O3B | PG | O2G | 110.7° | 109.5° |
| O3B | PG | O3G | 98.2° | 109.5° |
| O1G | PG | O2G | 119.6° | 109.4° |
| O1G | PG | O3G | 109.0° | 109.4° |
| PG | O1G | H1G1 | 108.2° | 106.8° |
| O2G | PG | O3G | 109.0° | 109.4° |
| PG | O2G | H2G1 | 110.7° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1A | PA | O2A | O5' | 123.2° | 120.0° |
| O1A | PA | O2A | O3A | 127.0° | 120.0° |
| O1A | PA | O5' | O3A | 113.9° | 120.1° |
| O1A | PA | O2A | H2A1 | 180.0° | 180.0° |
| O1A | PA | O5' | C5' | 167.3° | 59.9° |
| O1A | PA | O3A | PB | 121.0° | 60.0° |
| O2A | PA | O5' | O3A | 115.4° | 120.0° |
| O2A | PA | O5' | C5' | 36.6° | 60.1° |
| O2A | PA | O3A | PB | 11.9° | 59.9° |
| O5' | PA | O2A | H2A1 | 56.8° | 60.0° |
| PA | O5' | C5' | C4' | 127.2° | 179.9° |
| PA | O5' | C5' | H'51 | 2.0° | 60.0° |
| PA | O5' | C5' | H'52 | 107.5° | 60.1° |
| O5' | PA | O3A | PB | 126.9° | 179.9° |
| O3A | PA | O2A | H2A1 | 53.0° | 60.0° |
| O3A | PA | O5' | C5' | 78.8° | 180.0° |
| PA | O3A | PB | O1B | 176.8° | 60.0° |
| PA | O3A | PB | O2B | 46.4° | 60.0° |
| PA | O3A | PB | O3B | 72.6° | 180.0° |
| O5' | C5' | C4' | H'51 | 125.3° | 120.0° |
| O5' | C5' | C4' | H'52 | 125.3° | 120.0° |
| O5' | C5' | H'51 | H'52 | 118.1° | 120.1° |
| O5' | C5' | C4' | O4' | 61.9° | 59.9° |
| O5' | C5' | C4' | H'41 | 63.4° | 60.0° |
| O5' | C5' | C4' | H'42 | 172.8° | 180.0° |
| C4' | C5' | H'51 | H'52 | 118.0° | 120.0° |
| C5' | C4' | O4' | H'41 | 125.3° | 120.0° |
| C5' | C4' | O4' | H'42 | 125.3° | 120.1° |
| C5' | C4' | H'41 | H'42 | 118.1° | 120.1° |
| C5' | C4' | O4' | C1' | 145.6° | 179.9° |
| H'51 | C5' | C4' | O4' | 172.8° | 179.9° |
| H'51 | C5' | C4' | H'41 | 61.9° | 60.0° |
| H'51 | C5' | C4' | H'42 | 47.5° | 60.0° |
| H'52 | C5' | C4' | O4' | 63.3° | 60.1° |
| H'52 | C5' | C4' | H'41 | 171.3° | 180.0° |
| H'52 | C5' | C4' | H'42 | 61.9° | 60.0° |
| O4' | C4' | H'41 | H'42 | 118.1° | 119.9° |
| C4' | O4' | C1' | N9 | 120.6° | 180.0° |
| C4' | O4' | C1' | H'11 | 4.6° | 60.0° |
| C4' | O4' | C1' | H'12 | 114.1° | 59.9° |
| H'41 | C4' | O4' | C1' | 20.3° | 60.0° |
| H'42 | C4' | O4' | C1' | 89.1° | 59.9° |
| O4' | C1' | N9 | H'11 | 125.2° | 119.9° |
| O4' | C1' | N9 | H'12 | 125.3° | 120.2° |
| O4' | C1' | H'11 | H'12 | 118.1° | 120.1° |
| O4' | C1' | N9 | C4 | 147.2° | 180.0° |
| O4' | C1' | N9 | C8 | 34.3° | 0.2° |
| N9 | C1' | H'11 | H'12 | 118.2° | 120.0° |
| C1' | N9 | C4 | C8 | 178.8° | 179.8° |
| C1' | N9 | C4 | N3 | 2.0° | 0.2° |
| C1' | N9 | C4 | C5 | 177.3° | 179.9° |
| C1' | N9 | C8 | N7 | 177.4° | 179.9° |
| C1' | N9 | C8 | HC81 | 2.6° | 0.1° |
| H'11 | C1' | N9 | C4 | 87.6° | 60.1° |
| H'11 | C1' | N9 | C8 | 90.9° | 120.1° |
| H'12 | C1' | N9 | C4 | 21.9° | 59.8° |
| H'12 | C1' | N9 | C8 | 159.6° | 120.0° |
| N9 | C4 | N3 | C5 | 179.1° | 179.8° |
| N9 | C4 | N3 | C2 | 178.7° | 179.9° |
| N9 | C4 | C5 | C6 | 179.0° | 180.0° |
| N9 | C4 | C5 | N7 | 1.2° | 0.1° |
| C4 | N9 | C8 | N7 | 1.4° | 0.1° |
| C4 | N9 | C8 | HC81 | 178.6° | 179.9° |
| C8 | N9 | C4 | N3 | 179.2° | 180.0° |
| C8 | N9 | C4 | C5 | 1.5° | 0.1° |
| N9 | C8 | N7 | C5 | 0.6° | 0.0° |
| N9 | C8 | N7 | HC81 | 180.0° | 180.0° |
| C4 | N3 | C2 | N2 | 179.9° | 180.0° |
| C4 | N3 | C2 | N1 | 0.2° | 0.3° |
| N3 | C4 | C5 | C6 | 0.2° | 0.1° |
| N3 | C4 | C5 | N7 | 179.5° | 180.0° |
| C5 | C4 | N3 | C2 | 0.4° | 0.0° |
| C4 | C5 | C6 | N1 | 0.2° | 0.2° |
| C4 | C5 | C6 | O6 | 179.9° | 179.9° |
| C4 | C5 | C6 | N7 | 179.7° | 179.9° |
| C4 | C5 | N7 | C8 | 0.4° | 0.0° |
| N3 | C2 | N2 | N1 | 179.9° | 179.7° |
| N3 | C2 | N2 | HN21 | 180.0° | 0.0° |
| N3 | C2 | N2 | HN22 | 54.7° | 179.7° |
| N3 | C2 | N1 | C6 | 0.2° | 0.6° |
| N3 | C2 | N1 | HN11 | 179.8° | 180.0° |
| C2 | N2 | HN21 | HN22 | 125.3° | 179.8° |
| N2 | C2 | N1 | C6 | 179.7° | 179.7° |
| N2 | C2 | N1 | HN11 | 0.3° | 0.2° |
| N1 | C2 | N2 | HN21 | 0.1° | 179.7° |
| N1 | C2 | N2 | HN22 | 125.2° | 0.5° |
| C2 | N1 | C6 | HN11 | 180.0° | 179.4° |
| C2 | N1 | C6 | O6 | 179.7° | 179.7° |
| C2 | N1 | C6 | C5 | 0.4° | 0.5° |
| N1 | C6 | O6 | C5 | 180.0° | 179.7° |
| N1 | C6 | C5 | N7 | 179.9° | 179.7° |
| HN11 | N1 | C6 | O6 | 0.3° | 0.3° |
| HN11 | N1 | C6 | C5 | 179.7° | 180.0° |
| O6 | C6 | C5 | N7 | 0.1° | 0.0° |
| C6 | C5 | N7 | C8 | 179.8° | 180.0° |
| C5 | N7 | C8 | HC81 | 179.4° | 180.0° |
| O3A | PB | O1B | O2B | 125.0° | 120.0° |
| O3A | PB | O1B | O3B | 111.0° | 120.0° |
| O3A | PB | O2B | O3B | 115.6° | 120.0° |
| O3A | PB | O2B | H2B1 | 179.9° | 60.0° |
| O3A | PB | O3B | PG | 107.9° | 180.0° |
| O1B | PB | O2B | O3B | 121.1° | 120.0° |
| O1B | PB | O2B | H2B1 | 56.6° | 180.0° |
| O1B | PB | O3B | PG | 140.1° | 60.0° |
| O2B | PB | O3B | PG | 10.7° | 60.0° |
| O3B | PB | O2B | H2B1 | 64.4° | 60.0° |
| PB | O3B | PG | O1G | 39.3° | 180.0° |
| PB | O3B | PG | O2G | 93.5° | 60.0° |
| PB | O3B | PG | O3G | 152.6° | 60.0° |
| O3B | PG | O1G | O2G | 127.9° | 120.0° |
| O3B | PG | O1G | O3G | 105.8° | 120.0° |
| O3B | PG | O2G | O3G | 107.0° | 120.0° |
| O3B | PG | O1G | H1G1 | 180.0° | 180.0° |
| O3B | PG | O2G | H2G1 | 180.0° | 60.0° |
| O1G | PG | O2G | O3G | 126.3° | 119.9° |
| O1G | PG | O2G | H2G1 | 53.2° | 60.1° |
| O2G | PG | O1G | H1G1 | 52.1° | 60.0° |
| O3G | PG | O1G | H1G1 | 74.2° | 60.0° |
| O3G | PG | O2G | H2G1 | 73.0° | 180.0° |
