AVI
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O | C | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.23Å | |
| C | CA | sing | 1.51Å | 1.53Å | |
| NE2 | CD2 | sing | 1.37Å | 1.37Å | Aromatic |
| NE2 | CE1 | sing | 1.35Å | 1.32Å | Aromatic |
| CD2 | CG | doub | 1.35Å | 1.36Å | Aromatic |
| CAM | N | sing | 1.47Å | 1.47Å | |
| CE1 | ND1 | doub | 1.31Å | 1.32Å | Aromatic |
| CA | N | sing | 1.47Å | 1.46Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CG | ND1 | sing | 1.34Å | 1.32Å | Aromatic |
| CG | CB | sing | 1.51Å | 1.50Å | |
| N | CAL | sing | 1.47Å | 1.46Å | |
| CAL | HE2 | sing | 1.09Å | 1.10Å | |
| CAL | HE3 | sing | 1.09Å | 1.10Å | |
| CAL | HAL | sing | 1.09Å | 1.10Å | |
| CAM | HE4 | sing | 1.09Å | 1.10Å | |
| CAM | HAM | sing | 1.09Å | 1.10Å | |
| CAM | HE5 | sing | 1.09Å | 1.10Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| OXT | H1 | sing | 0.97Å | 0.95Å | |
| CB | HB1 | sing | 1.09Å | 1.10Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| NE2 | HKL | sing | 0.97Å | 1.00Å | |
| CD2 | HD2 | sing | 1.08Å | 1.08Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O | C | OXT | 124.7° | 120.0° |
| O | C | CA | 120.1° | 120.1° |
| OXT | C | CA | 115.2° | 120.0° |
| C | OXT | H1 | 109.5° | 117.0° |
| C | CA | N | 110.5° | 109.4° |
| C | CA | CB | 108.8° | 109.5° |
| C | CA | HA | 108.3° | 109.5° |
| CD2 | NE2 | CE1 | 108.0° | 107.2° |
| NE2 | CD2 | CG | 106.8° | 106.8° |
| CD2 | NE2 | HKL | 126.0° | 126.3° |
| NE2 | CD2 | HD2 | 126.6° | 126.6° |
| NE2 | CE1 | ND1 | 108.1° | 108.7° |
| NE2 | CE1 | HE1 | 125.9° | 125.7° |
| CE1 | NE2 | HKL | 126.0° | 126.4° |
| CD2 | CG | ND1 | 106.6° | 108.0° |
| CD2 | CG | CB | 130.7° | 126.0° |
| CG | CD2 | HD2 | 126.6° | 126.6° |
| CAM | N | CA | 106.8° | 111.0° |
| CAM | N | CAL | 106.3° | 111.0° |
| N | CAM | HE4 | 109.5° | 109.5° |
| N | CAM | HAM | 109.4° | 109.4° |
| N | CAM | HE5 | 109.5° | 109.5° |
| CE1 | ND1 | CG | 110.6° | 109.2° |
| ND1 | CE1 | HE1 | 126.0° | 125.6° |
| N | CA | CB | 111.9° | 109.5° |
| CA | N | CAL | 110.0° | 111.0° |
| N | CA | HA | 109.1° | 109.5° |
| CA | CB | CG | 113.7° | 109.5° |
| CB | CA | HA | 108.2° | 109.5° |
| CA | CB | HB1 | 108.4° | 109.5° |
| CA | CB | HB2 | 108.4° | 109.4° |
| ND1 | CG | CB | 122.7° | 126.0° |
| CG | CB | HB1 | 108.4° | 109.5° |
| CG | CB | HB2 | 108.4° | 109.5° |
| N | CAL | HE2 | 109.5° | 109.5° |
| N | CAL | HE3 | 109.5° | 109.5° |
| N | CAL | HAL | 109.5° | 109.5° |
| HE2 | CAL | HE3 | 109.5° | 109.4° |
| HE2 | CAL | HAL | 109.4° | 109.5° |
| HE3 | CAL | HAL | 109.5° | 109.5° |
| HE4 | CAM | HAM | 109.5° | 109.4° |
| HE4 | CAM | HE5 | 109.4° | 109.5° |
| HAM | CAM | HE5 | 109.5° | 109.4° |
| HB1 | CB | HB2 | 109.5° | 109.4° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O | C | OXT | CA | 178.6° | 180.0° |
| O | C | CA | N | 122.8° | 0.0° |
| O | C | CA | CB | 114.0° | 120.0° |
| O | C | CA | HA | 3.4° | 120.0° |
| O | C | OXT | H1 | 0.0° | 0.1° |
| OXT | C | CA | N | 58.5° | 180.0° |
| OXT | C | CA | CB | 64.7° | 60.0° |
| OXT | C | CA | HA | 177.9° | 60.0° |
| C | CA | N | CAM | 64.0° | 58.9° |
| C | CA | N | CB | 121.4° | 120.0° |
| C | CA | N | HA | 118.9° | 120.0° |
| C | CA | CB | HA | 117.4° | 120.0° |
| C | CA | CB | CG | 57.2° | 175.0° |
| C | CA | N | CAL | 178.9° | 65.0° |
| CA | C | OXT | H1 | 178.6° | 180.0° |
| C | CA | CB | HB1 | 177.9° | 64.9° |
| C | CA | CB | HB2 | 63.4° | 55.0° |
| CD2 | NE2 | CE1 | HKL | 180.0° | 179.6° |
| NE2 | CD2 | CG | HD2 | 180.0° | 179.6° |
| CD2 | NE2 | CE1 | ND1 | 0.1° | 0.3° |
| NE2 | CD2 | CG | ND1 | 0.0° | 0.4° |
| NE2 | CD2 | CG | CB | 179.9° | 179.8° |
| CD2 | NE2 | CE1 | HE1 | 179.9° | 179.8° |
| CE1 | NE2 | CD2 | CG | 0.0° | 0.4° |
| NE2 | CE1 | ND1 | HE1 | 180.0° | 179.9° |
| NE2 | CE1 | ND1 | CG | 0.1° | 0.0° |
| CE1 | NE2 | CD2 | HD2 | 180.0° | 179.9° |
| CD2 | CG | ND1 | CE1 | 0.1° | 0.3° |
| CD2 | CG | CB | CA | 37.4° | 124.7° |
| CD2 | CG | ND1 | CB | 179.9° | 179.7° |
| CD2 | CG | CB | HB1 | 83.2° | 4.7° |
| CD2 | CG | CB | HB2 | 158.0° | 115.3° |
| CG | CD2 | NE2 | HKL | 180.0° | 180.0° |
| CAM | N | CA | CAL | 114.9° | 124.0° |
| CAM | N | CA | CB | 174.6° | 61.1° |
| CAM | N | CAL | HE2 | 180.0° | 56.1° |
| CAM | N | CAL | HE3 | 60.0° | 176.0° |
| CAM | N | CAL | HAL | 60.0° | 64.0° |
| N | CAM | HE4 | HAM | 120.0° | 119.9° |
| N | CAM | HE4 | HE5 | 120.0° | 120.1° |
| N | CAM | HAM | HE5 | 120.0° | 120.0° |
| CAM | N | CA | HA | 54.9° | 178.9° |
| CE1 | ND1 | CG | CB | 179.9° | 180.0° |
| ND1 | CE1 | NE2 | HKL | 180.0° | 179.9° |
| N | CA | CB | HA | 120.2° | 120.0° |
| N | CA | CB | CG | 179.6° | 65.0° |
| CA | N | CAL | HE2 | 64.8° | 179.9° |
| CA | N | CAL | HE3 | 55.2° | 60.0° |
| CA | N | CAL | HAL | 175.2° | 60.0° |
| CA | N | CAM | HE4 | 180.0° | 63.9° |
| CA | N | CAM | HAM | 60.0° | 56.0° |
| CA | N | CAM | HE5 | 60.0° | 176.0° |
| N | CA | CB | HB1 | 59.8° | 55.0° |
| N | CA | CB | HB2 | 59.0° | 175.0° |
| CA | CB | CG | ND1 | 142.4° | 54.9° |
| CA | CB | CG | HB1 | 120.6° | 120.1° |
| CA | CB | CG | HB2 | 120.6° | 120.0° |
| CB | CA | N | CAL | 59.7° | 175.0° |
| CA | CB | HB1 | HB2 | 118.1° | 120.0° |
| ND1 | CG | CB | HB1 | 97.0° | 175.0° |
| ND1 | CG | CB | HB2 | 21.8° | 65.0° |
| CG | ND1 | CE1 | HE1 | 179.9° | 179.9° |
| ND1 | CG | CD2 | HD2 | 179.9° | 179.9° |
| CG | CB | CA | HA | 60.2° | 55.0° |
| CG | CB | HB1 | HB2 | 118.1° | 120.0° |
| CB | CG | CD2 | HD2 | 0.1° | 0.2° |
| N | CAL | HE2 | HE3 | 120.0° | 120.0° |
| N | CAL | HE2 | HAL | 120.0° | 120.1° |
| N | CAL | HE3 | HAL | 120.0° | 120.1° |
| CAL | N | CAM | HE4 | 62.6° | 60.1° |
| CAL | N | CAM | HAM | 57.4° | 180.0° |
| CAL | N | CAM | HE5 | 177.4° | 60.0° |
| CAL | N | CA | HA | 60.0° | 54.9° |
| HE2 | CAL | HE3 | HAL | 120.0° | 119.9° |
| HE4 | CAM | HAM | HE5 | 120.0° | 120.0° |
| HA | CA | CB | HB1 | 60.4° | 175.0° |
| HA | CA | CB | HB2 | 179.2° | 65.0° |
| HE1 | CE1 | NE2 | HKL | 0.1° | 0.2° |
| HKL | NE2 | CD2 | HD2 | 0.0° | 0.4° |
