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SummaryGeometryRelated PDB entries

AVD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
C4C5doub1.38Å1.38ÅAromatic
C5F11sing1.35Å1.31Å
C5C6sing1.39Å1.41ÅAromatic
C1C6doub1.38Å1.41ÅAromatic
C6H6sing1.08Å1.08Å
C3C2doub1.39Å1.39ÅAromatic
N10C2sing1.40Å1.34Å
C2C1sing1.39Å1.40ÅAromatic
C3C4sing1.38Å1.39ÅAromatic
C4H4sing1.08Å1.08Å
O40C39doub1.22Å1.25Å
C34C39sing1.47Å1.55Å
C39O41sing1.35Å1.24Å
O41HO41sing0.97Å0.95Å
C33C34doub1.40Å1.40ÅAromatic
C28C34sing1.40Å1.41ÅAromatic
C32C33sing1.38Å1.40ÅAromatic
C33H33sing1.08Å1.08Å
C31C32doub1.39Å1.40ÅAromatic
C32H32sing1.08Å1.08Å
C31C30sing1.38Å1.39ÅAromatic
C31H31sing1.08Å1.08Å
C30C28doub1.39Å1.41ÅAromatic
C30H30sing1.08Å1.08Å
C28N21sing1.39Å1.46Å
C22N21sing1.34Å1.40Å
N21C16sing1.38Å1.45Å
C22C23doub1.38Å1.41Å
C22H22sing1.08Å1.08Å
C26C23sing1.47Å1.58Å
C23C24sing1.47Å1.43Å
O42C26doub1.22Å1.22Å
C26O27sing1.35Å1.25Å
O27HO27sing0.97Å0.95Å
C24C17sing1.47Å1.40Å
C24O25doub1.22Å1.23Å
C16C17doub1.41Å1.39ÅAromatic
C17C18sing1.40Å1.39ÅAromatic
C18C13doub1.38Å1.38ÅAromatic
C18H18sing1.08Å1.08Å
C16C15sing1.39Å1.38ÅAromatic
C15C14doub1.38Å1.39ÅAromatic
C15H15sing1.08Å1.08Å
C14CL29sing1.74Å1.76Å
C14C13sing1.40Å1.41ÅAromatic
C13N10sing1.40Å1.38Å
N10HN10sing0.97Å1.00Å
CL12C3sing1.74Å1.71Å
C1F9sing1.35Å1.35Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
C4C5F11118.8°119.9°
C4C5C6122.3°120.1°
C5C4C3117.4°120.1°
C5C4H4121.3°119.9°
F11C5C6118.9°120.0°
C5C6C1118.0°120.1°
C5C6H6121.0°119.9°
C1C6H6121.0°120.0°
C6C1C2120.7°119.9°
C6C1F9119.3°120.0°
C3C2N10122.4°120.0°
C3C2C1118.2°119.9°
C2C3C4123.4°119.9°
C2C3CL12120.1°120.0°
N10C2C1119.4°120.0°
C2N10C13124.2°120.0°
C2N10HN10117.9°120.0°
C2C1F9120.0°120.1°
C3C4H4121.3°120.0°
C4C3CL12116.5°120.0°
O40C39C34117.8°120.0°
O40C39O41122.9°120.0°
C34C39O41119.3°120.1°
C39C34C33118.2°120.2°
C39C34C28121.7°120.2°
C39O41HO41109.5°117.1°
C33C34C28120.1°119.6°
C34C33C32120.7°119.9°
C34C33H33119.7°120.1°
C34C28C30118.1°119.6°
C34C28N21119.3°120.2°
C32C33H33119.6°120.0°
C33C32C31119.9°120.3°
C33C32H32120.1°119.8°
C31C32H32120.0°119.8°
C32C31C30119.1°120.4°
C32C31H31120.5°119.8°
C30C31H31120.4°119.8°
C31C30C28122.0°120.1°
C31C30H30119.0°119.9°
C28C30H30119.0°120.0°
C30C28N21122.4°120.2°
C28N21C22121.4°118.6°
C28N21C16121.0°118.7°
C22N21C16117.4°122.8°
N21C22C23122.1°122.1°
N21C22H22118.9°118.9°
N21C16C17121.4°120.3°
N21C16C15122.1°120.4°
C23C22H22118.9°119.0°
C22C23C26117.6°120.5°
C22C23C24118.1°118.9°
C26C23C24124.3°120.6°
C23C26O42115.1°120.0°
C23C26O27124.1°120.0°
C23C24C17121.5°117.2°
C23C24O25121.8°121.3°
O42C26O27120.8°120.0°
C26O27HO27109.5°117.0°
C17C24O25116.7°121.4°
C24C17C16119.4°118.7°
C24C17C18119.3°121.0°
C16C17C18121.3°120.3°
C17C16C15116.5°119.3°
C17C18C13123.3°119.6°
C17C18H18118.3°120.2°
C13C18H18118.4°120.3°
C18C13C14114.7°120.1°
C18C13N10121.8°119.9°
C16C15C14122.1°120.1°
C16C15H15119.0°119.9°
C14C15H15119.0°120.0°
C15C14CL29114.8°119.7°
C15C14C13122.2°120.6°
CL29C14C13123.0°119.7°
C14C13N10123.5°119.9°
C13N10HN10117.9°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
C4C5F11C6177.9°179.7°
C4C5C6C10.7°0.3°
C4C5C6H6179.3°179.7°
C5C4C3C22.6°0.0°
C5C4C3H4180.0°179.9°
C5C4C3CL12178.7°179.8°
F11C5C6C1178.6°180.0°
F11C5C6H61.4°0.0°
F11C5C4C3179.7°180.0°
F11C5C4H40.3°0.1°
C5C6C1H6180.0°180.0°
C5C6C1C21.0°0.0°
C6C5C4C32.4°0.3°
C6C5C4H4177.6°179.8°
C5C6C1F9179.8°179.7°
C6C1C2C30.8°0.2°
C6C1C2N10179.0°180.0°
C6C1C2F9179.2°179.7°
H6C6C1C2179.0°180.0°
H6C6C1F90.2°0.3°
C3C2N10C1178.1°179.8°
C2C3C4CL12178.6°179.8°
C2C3C4H4177.4°180.0°
C3C2N10C1378.2°162.0°
C3C2N10HN10101.8°18.0°
C3C2C1F9180.0°180.0°
N10C2C3C4177.1°180.0°
C2N10C13C182.2°108.6°
C2N10C13C14178.5°72.2°
C2N10C13HN10180.0°180.0°
N10C2C3CL121.5°0.2°
N10C2C1F91.8°0.2°
C1C2C3C41.0°0.2°
C1C2N10C1399.9°17.8°
C1C2N10HN1080.1°162.2°
C1C2C3CL12179.6°180.0°
H4C4C3CL121.3°0.2°
O40C39C34O41178.3°179.9°
O40C39O41HO410.0°0.0°
O40C39C34C3358.5°180.0°
O40C39C34C28120.4°0.3°
C34C39O41HO41178.2°179.9°
C39C34C33C28179.0°179.7°
C39C34C33C32179.5°180.0°
C39C34C33H330.5°0.1°
C39C34C28C30178.7°179.8°
C39C34C28N212.9°0.2°
O41C39C34C33123.1°0.1°
O41C39C34C2857.9°179.7°
C34C33C32H33180.0°179.9°
C34C33C32C310.4°0.1°
C34C33C32H32179.6°179.9°
C33C34C28C302.3°0.5°
C33C34C28N21178.2°179.9°
C28C34C33C321.5°0.3°
C28C34C33H33178.5°179.8°
C34C28C30C312.2°0.5°
C34C28C30N21175.7°179.6°
C34C28C30H30177.8°179.7°
C34C28N21C2265.2°89.8°
C34C28N21C16109.8°90.5°
C33C32C31H32180.0°180.0°
C33C32C31C300.2°0.0°
C33C32C31H31179.8°180.0°
H33C33C32C31179.6°180.0°
H33C33C32H320.4°0.0°
C32C31C30H31180.0°179.9°
C32C31C30C281.1°0.2°
C32C31C30H30178.9°180.0°
H32C32C31C30179.8°180.0°
H32C32C31H310.2°0.0°
C31C30C28H30180.0°179.8°
C31C30C28N21177.9°179.9°
H31C31C30C28178.9°179.8°
H31C31C30H301.1°0.1°
C30C28N21C22119.2°89.8°
C30C28N21C1665.8°89.9°
H30C30C28N212.1°0.1°
C28N21C22C16175.1°179.8°
C28N21C22C23177.4°180.0°
C28N21C22H222.6°0.0°
C28N21C16C17177.8°179.7°
C28N21C16C152.7°0.0°
N21C22C23H22180.0°179.9°
N21C22C23C26177.7°179.9°
N21C22C23C241.4°0.1°
C22N21C16C172.7°0.5°
C22N21C16C15177.9°179.8°
C16N21C22C232.3°0.2°
C16N21C22H22177.7°179.7°
N21C16C17C242.1°0.5°
N21C16C17C15179.5°179.7°
N21C16C17C18179.5°179.7°
N21C16C15C14178.7°180.0°
N21C16C15H151.3°0.1°
C22C23C26C24179.0°180.0°
C22C23C26O424.7°0.0°
C22C23C26O27174.8°180.0°
C22C23C24C170.7°0.0°
C22C23C24O25178.9°180.0°
H22C22C23C262.3°0.0°
H22C22C23C24178.6°180.0°
C23C26O42O27179.5°180.0°
C23C26O27HO27179.5°180.0°
C26C23C24C17178.3°180.0°
C26C23C24O252.1°0.0°
C24C23C26O42174.3°180.0°
C24C23C26O276.2°0.0°
C23C24C17O25179.6°180.0°
C23C24C17C161.1°0.3°
C23C24C17C18178.6°179.9°
O42C26O27HO270.0°0.0°
C24C17C16C18177.4°179.8°
C24C17C18C13179.6°180.0°
C24C17C18H180.4°0.1°
C24C17C16C15178.4°179.8°
O25C24C17C16178.5°179.7°
O25C24C17C181.1°0.1°
C16C17C18C132.3°0.2°
C16C17C18H18177.7°179.7°
C17C16C15C140.8°0.3°
C17C16C15H15179.2°179.7°
C17C18C13H18180.0°180.0°
C18C17C16C151.0°0.0°
C17C18C13C141.5°0.8°
C17C18C13N10179.1°180.0°
C18C13C14C150.3°1.1°
C18C13C14CL29178.4°179.7°
C18C13C14N10179.4°179.3°
C18C13N10HN10177.8°71.5°
H18C18C13C14178.5°179.2°
H18C18C13N100.9°0.1°
C16C15C14H15180.0°180.0°
C16C15C14CL29179.7°179.9°
C16C15C14C131.4°0.8°
C15C14CL29C13178.2°179.2°
C15C14C13N10179.1°179.7°
H15C15C14CL290.3°0.0°
H15C15C14C13178.6°179.2°
CL29C14C13N101.0°0.5°
C14C13N10HN101.5°107.8°

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PDB entries from 2024-07-10

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