AVC

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
OP3	P	sing	1.61Å	94.38Å
OP3	HOP3	sing	0.97Å	0.95Å
P	OP1	doub	1.48Å	1.49Å
P	OP2	sing	1.61Å	1.49Å
P	O5'	sing	1.61Å	1.59Å
OP2	HOP2	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.41Å
C5'	C4'	sing	1.53Å	1.50Å
C5'	H5'	sing	1.09Å	1.10Å
C5'	H5''	sing	1.09Å	1.10Å
C4'	O4'	sing	1.45Å	1.44Å
C4'	C3'	sing	1.55Å	1.52Å
C4'	H4'	sing	1.09Å	1.10Å
O4'	C1'	sing	1.44Å	1.41Å
C3'	O3'	sing	1.44Å	1.38Å
C3'	C2'	sing	1.54Å	1.53Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	V	sing	1.87Å	1.96Å
C2'	O2'	sing	1.46Å	1.38Å
C2'	C1'	sing	1.55Å	1.53Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	V	sing	1.87Å	1.96Å
C1'	N9	sing	1.47Å	1.46Å
C1'	H1'	sing	1.09Å	1.10Å
V	O1V	doub	1.58Å	1.64Å
V	O2V	sing	1.84Å	1.63Å
O2V	HV	sing	0.97Å	0.95Å
N9	C8	sing	1.36Å	1.37Å	Aromatic
N9	C4	sing	1.37Å	1.38Å	Aromatic
C8	N7	doub	1.30Å	1.31Å	Aromatic
C8	H8	sing	1.08Å	1.08Å
N7	C5	sing	1.35Å	1.39Å	Aromatic
C5	C6	sing	1.41Å	1.41Å	Aromatic
C5	C4	doub	1.41Å	1.38Å	Aromatic
C6	N6	sing	1.38Å	1.34Å
C6	N1	doub	1.33Å	1.35Å	Aromatic
N6	H61	sing	0.97Å	1.00Å
N6	H62	sing	0.97Å	1.00Å
N1	C2	sing	1.32Å	1.34Å	Aromatic
C2	N3	doub	1.32Å	1.33Å	Aromatic
C2	H2	sing	1.08Å	1.08Å
N3	C4	sing	1.33Å	1.34Å	Aromatic

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
P	OP3	HOP3	81.8°	114.0°
OP3	P	OP1	81.7°	109.5°
OP3	P	OP2	65.8°	109.5°
OP3	P	O5'	72.1°	109.5°
OP1	P	OP2	119.7°	109.5°
OP1	P	O5'	107.6°	109.4°
OP2	P	O5'	108.3°	109.5°
P	OP2	HOP2	109.5°	114.0°
P	O5'	C5'	120.4°	123.0°
O5'	C5'	C4'	109.8°	109.4°
O5'	C5'	H5'	109.3°	109.4°
O5'	C5'	H5''	109.3°	109.5°
C4'	C5'	H5'	109.4°	109.5°
C4'	C5'	H5''	109.3°	109.5°
C5'	C4'	O4'	108.2°	110.7°
C5'	C4'	C3'	115.8°	110.7°
C5'	C4'	H4'	105.1°	110.6°
H5'	C5'	H5''	109.7°	109.5°
O4'	C4'	C3'	106.5°	103.1°
O4'	C4'	H4'	114.6°	110.7°
C4'	O4'	C1'	109.0°	107.1°
C3'	C4'	H4'	106.9°	110.9°
C4'	C3'	O3'	110.9°	110.2°
C4'	C3'	C2'	105.5°	102.7°
C4'	C3'	H3'	111.7°	109.0°
O4'	C1'	C2'	107.6°	107.3°
O4'	C1'	N9	108.7°	109.9°
O4'	C1'	H1'	111.4°	109.9°
O3'	C3'	C2'	111.1°	116.8°
O3'	C3'	H3'	106.2°	109.2°
C3'	O3'	V	117.9°	101.5°
C2'	C3'	H3'	111.5°	108.6°
C3'	C2'	O2'	111.2°	112.7°
C3'	C2'	C1'	104.4°	103.8°
C3'	C2'	H2'	112.0°	110.9°
O3'	V	O2'	80.3°	97.8°
O3'	V	O1V	128.3°	111.8°
O3'	V	O2V	121.9°	111.7°
O2'	C2'	C1'	110.6°	106.6°
O2'	C2'	H2'	106.0°	110.9°
C2'	O2'	V	118.0°	98.8°
C1'	C2'	H2'	112.7°	111.8°
C2'	C1'	N9	110.0°	109.9°
C2'	C1'	H1'	110.1°	109.8°
O2'	V	O1V	100.5°	111.7°
O2'	V	O2V	97.6°	111.7°
N9	C1'	H1'	109.1°	110.1°
C1'	N9	C8	128.6°	126.3°
C1'	N9	C4	125.5°	126.2°
O1V	V	O2V	109.4°	111.5°
V	O2V	HV	109.5°	114.0°
C8	N9	C4	105.9°	107.5°
N9	C8	N7	113.6°	110.0°
N9	C8	H8	123.2°	125.0°
N9	C4	C5	105.8°	105.9°
N9	C4	N3	127.3°	135.0°
N7	C8	H8	123.2°	125.0°
C8	N7	C5	104.0°	109.4°
N7	C5	C6	132.5°	134.7°
N7	C5	C4	110.6°	107.1°
C6	C5	C4	116.9°	118.1°
C5	C6	N6	123.8°	120.7°
C5	C6	N1	117.8°	118.4°
C5	C4	N3	126.8°	119.1°
N6	C6	N1	118.5°	120.8°
C6	N6	H61	109.5°	120.1°
C6	N6	H62	109.5°	120.0°
C6	N1	C2	118.5°	121.2°
H61	N6	H62	109.5°	120.0°
N1	C2	N3	129.3°	122.4°
N1	C2	H2	115.3°	118.7°
N3	C2	H2	115.4°	118.9°
C2	N3	C4	110.7°	120.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
OP3	P	OP1	OP2	56.0°	120.0°
OP3	P	OP1	O5'	68.2°	120.0°
OP3	P	OP2	O5'	59.8°	120.0°
OP3	P	OP2	HOP2	72.6°	60.0°
OP3	P	O5'	C5'	28.0°	65.0°
HOP3	OP3	P	OP1	180.0°	180.0°
HOP3	OP3	P	OP2	52.1°	60.0°
HOP3	OP3	P	O5'	68.4°	60.0°
OP1	P	OP2	O5'	123.8°	120.0°
OP1	P	OP2	HOP2	8.6°	60.0°
OP1	P	O5'	C5'	46.9°	55.0°
OP2	P	O5'	C5'	83.9°	175.0°
O5'	P	OP2	HOP2	132.4°	180.0°
P	O5'	C5'	C4'	138.6°	180.0°
P	O5'	C5'	H5'	18.6°	60.0°
P	O5'	C5'	H5''	101.5°	60.0°
O5'	C5'	C4'	H5'	120.0°	119.9°
O5'	C5'	C4'	H5''	119.9°	120.0°
O5'	C5'	H5'	H5''	119.8°	120.0°
O5'	C5'	C4'	O4'	47.1°	66.5°
O5'	C5'	C4'	C3'	166.5°	179.9°
O5'	C5'	C4'	H4'	75.8°	56.6°
C4'	C5'	H5'	H5''	119.8°	120.0°
C5'	C4'	O4'	C3'	125.1°	118.4°
C5'	C4'	O4'	H4'	116.9°	123.0°
C5'	C4'	C3'	H4'	116.7°	123.1°
C5'	C4'	O4'	C1'	151.7°	158.0°
C5'	C4'	C3'	O3'	103.3°	78.7°
C5'	C4'	C3'	C2'	136.4°	156.1°
C5'	C4'	C3'	H3'	15.0°	41.1°
H5'	C5'	C4'	O4'	72.9°	53.5°
H5'	C5'	C4'	C3'	46.5°	60.2°
H5'	C5'	C4'	H4'	164.2°	176.6°
H5''	C5'	C4'	O4'	167.0°	173.5°
H5''	C5'	C4'	C3'	73.6°	59.8°
H5''	C5'	C4'	H4'	44.1°	63.4°
O4'	C4'	C3'	H4'	122.9°	118.5°
O4'	C4'	C3'	O3'	136.4°	162.9°
O4'	C4'	C3'	C2'	16.0°	37.7°
O4'	C4'	C3'	H3'	105.4°	77.3°
C4'	O4'	C1'	C2'	26.2°	25.5°
C4'	O4'	C1'	N9	145.3°	144.9°
C4'	O4'	C1'	H1'	94.5°	93.9°
C3'	C4'	O4'	C1'	26.6°	39.6°
C4'	C3'	O3'	C2'	117.0°	116.7°
C4'	C3'	O3'	H3'	121.5°	119.7°
C4'	C3'	C2'	H3'	121.5°	115.3°
C4'	C3'	O3'	V	106.4°	114.2°
C4'	C3'	C2'	O2'	118.4°	92.8°
C4'	C3'	C2'	C1'	0.9°	22.1°
C4'	C3'	C2'	H2'	123.1°	142.3°
H4'	C4'	O4'	C1'	91.4°	79.0°
H4'	C4'	C3'	O3'	13.4°	44.4°
H4'	C4'	C3'	C2'	106.9°	80.8°
H4'	C4'	C3'	H3'	131.7°	164.2°
O4'	C1'	C2'	C3'	15.0°	0.7°
O4'	C1'	C2'	O2'	134.7°	119.9°
O4'	C1'	C2'	N9	118.3°	119.4°
O4'	C1'	C2'	H1'	121.5°	119.4°
O4'	C1'	C2'	H2'	106.8°	118.8°
O4'	C1'	N9	H1'	121.6°	121.1°
O4'	C1'	N9	C8	20.3°	23.5°
O4'	C1'	N9	C4	161.7°	156.8°
O3'	C3'	C2'	H3'	118.3°	124.0°
O3'	C3'	C2'	O2'	1.9°	28.0°
O3'	C3'	C2'	C1'	121.2°	142.9°
O3'	C3'	C2'	H2'	116.6°	97.0°
C3'	O3'	V	O2'	11.7°	16.5°
C3'	O3'	V	O1V	84.1°	133.6°
C3'	O3'	V	O2V	104.6°	100.7°
C2'	C3'	O3'	V	10.6°	2.5°
C3'	C2'	O2'	C1'	115.5°	113.2°
C3'	C2'	O2'	H2'	122.0°	124.9°
C3'	C2'	C1'	H2'	121.8°	119.6°
C3'	C2'	O2'	V	7.5°	35.4°
C3'	C2'	C1'	N9	133.2°	120.1°
C3'	C2'	C1'	H1'	106.5°	118.7°
H3'	C3'	O3'	V	132.0°	126.1°
H3'	C3'	C2'	O2'	120.2°	151.9°
H3'	C3'	C2'	C1'	120.6°	93.2°
H3'	C3'	C2'	H2'	1.7°	27.0°
O3'	V	O2'	C2'	10.4°	30.2°
O3'	V	O2'	O1V	127.4°	117.2°
O3'	V	O2'	O2V	121.2°	117.1°
O3'	V	O1V	O2V	172.2°	125.8°
O3'	V	O2V	HV	62.4°	180.0°
O2'	C2'	C1'	H2'	118.5°	121.3°
O2'	C2'	C1'	N9	107.0°	120.7°
O2'	C2'	C1'	H1'	13.2°	0.5°
C2'	O2'	V	O1V	116.9°	147.4°
C2'	O2'	V	O2V	131.6°	86.9°
C1'	C2'	O2'	V	108.0°	148.6°
C2'	C1'	N9	H1'	120.8°	121.1°
C2'	C1'	N9	C8	97.3°	94.3°
C2'	C1'	N9	C4	80.7°	85.4°
H2'	C2'	O2'	V	129.5°	89.5°
H2'	C2'	C1'	N9	11.4°	0.6°
H2'	C2'	C1'	H1'	131.6°	121.8°
O2'	V	O1V	O2V	102.0°	125.8°
O2'	V	O2V	HV	145.6°	71.7°
C1'	N9	C8	C4	178.3°	179.7°
C1'	N9	C8	N7	177.3°	180.0°
C1'	N9	C8	H8	2.7°	0.0°
C1'	N9	C4	C5	177.4°	179.9°
C1'	N9	C4	N3	1.9°	0.8°
H1'	C1'	N9	C8	141.9°	144.7°
H1'	C1'	N9	C4	40.1°	35.6°
O1V	V	O2V	HV	110.4°	54.1°
N9	C8	N7	H8	180.0°	180.0°
N9	C8	N7	C5	0.6°	0.0°
C8	N9	C4	C5	1.0°	0.4°
C8	N9	C4	N3	179.7°	179.5°
C4	N9	C8	N7	1.0°	0.3°
C4	N9	C8	H8	179.0°	179.8°
N9	C4	C5	N7	0.7°	0.4°
N9	C4	C5	C6	179.2°	179.8°
N9	C4	C5	N3	179.3°	179.3°
N9	C4	N3	C2	179.1°	179.6°
C8	N7	C5	C6	179.8°	180.0°
C8	N7	C5	C4	0.1°	0.2°
H8	C8	N7	C5	179.4°	180.0°
N7	C5	C6	C4	179.9°	179.8°
N7	C5	C6	N6	0.2°	0.0°
N7	C5	C6	N1	179.9°	180.0°
N7	C5	C4	N3	180.0°	179.6°
C5	C6	N6	N1	179.9°	180.0°
C5	C6	N6	H61	163.2°	0.0°
C5	C6	N6	H62	43.1°	180.0°
C5	C6	N1	C2	0.1°	0.1°
C6	C5	C4	N3	0.1°	0.5°
C4	C5	C6	N6	179.9°	179.7°
C4	C5	C6	N1	0.0°	0.2°
C5	C4	N3	C2	0.1°	0.6°
C6	N6	H61	H62	120.0°	179.9°
N6	C6	N1	C2	179.8°	180.0°
N1	C6	N6	H61	16.8°	179.9°
N1	C6	N6	H62	136.8°	0.0°
C6	N1	C2	N3	0.1°	0.0°
C6	N1	C2	H2	179.9°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.0°	0.3°
H2	C2	N3	C4	180.0°	179.7°

Definition date:	2002-07-25
Last modified:	2011-06-04
Release status:	REL
Processing site:	RCSB