English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

AVA

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C	doub	1.21Å	1.26Å
C	O1	sing	1.35Å	1.25Å
C	C1	sing	1.48Å	1.51Å
C11	C10	doub	1.38Å	1.38Å	Aromatic
C11	C1	sing	1.40Å	1.39Å	Aromatic
C10	C9	sing	1.38Å	1.38Å	Aromatic
C1	C2	doub	1.39Å	1.39Å	Aromatic
C9	C3	doub	1.39Å	1.39Å	Aromatic
C2	C3	sing	1.39Å	1.39Å	Aromatic
C3	C4	sing	1.48Å	1.48Å
C4	C5	doub	1.39Å	1.39Å	Aromatic
C4	N	sing	1.33Å	1.34Å	Aromatic
C5	C6	sing	1.38Å	1.38Å	Aromatic
N	C8	doub	1.32Å	1.34Å	Aromatic
C6	C7	doub	1.39Å	1.37Å	Aromatic
C8	C7	sing	1.38Å	1.38Å	Aromatic
C2	H	sing	1.08Å	1.08Å
C5	H1	sing	1.08Å	1.08Å
C6	H2	sing	1.08Å	1.08Å
O1	H8	sing	0.97Å	0.95Å
C10	H6	sing	1.08Å	1.08Å
C11	H7	sing	1.08Å	1.08Å
C7	H3	sing	1.08Å	1.08Å
C8	H4	sing	1.08Å	1.08Å
C9	H5	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	O1	124.5°	120.0°
O	C	C1	118.4°	120.0°
O1	C	C1	117.1°	120.0°
C	O1	H8	109.5°	117.0°
C	C1	C11	121.1°	120.1°
C	C1	C2	119.9°	120.1°
C10	C11	C1	120.2°	120.1°
C11	C10	C9	120.3°	120.3°
C11	C10	H6	119.9°	119.9°
C10	C11	H7	119.9°	119.9°
C11	C1	C2	119.1°	119.8°
C1	C11	H7	119.9°	119.9°
C10	C9	C3	120.6°	120.2°
C9	C10	H6	119.8°	119.9°
C10	C9	H5	119.7°	119.9°
C1	C2	C3	121.4°	119.8°
C1	C2	H	119.3°	120.1°
C9	C3	C2	118.4°	119.8°
C9	C3	C4	121.3°	120.1°
C3	C9	H5	119.7°	119.9°
C2	C3	C4	120.3°	120.1°
C3	C2	H	119.3°	120.1°
C3	C4	C5	121.9°	119.8°
C3	C4	N	116.0°	119.7°
C5	C4	N	122.1°	120.5°
C4	C5	C6	118.7°	119.1°
C4	C5	H1	120.6°	120.4°
C4	N	C8	117.6°	121.6°
C5	C6	C7	119.7°	118.5°
C6	C5	H1	120.7°	120.5°
C5	C6	H2	120.2°	120.8°
N	C8	C7	123.7°	120.9°
N	C8	H4	118.1°	119.6°
C6	C7	C8	118.1°	119.3°
C7	C6	H2	120.2°	120.7°
C6	C7	H3	121.0°	120.3°
C8	C7	H3	121.0°	120.4°
C7	C8	H4	118.1°	119.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	O1	C1	179.0°	180.0°
O	C	C1	C11	49.8°	179.8°
O	C	C1	C2	131.5°	0.0°
O	C	O1	H8	0.0°	0.1°
O1	C	C1	C11	131.2°	0.3°
O1	C	C1	C2	47.6°	180.0°
C	C1	C11	C10	179.2°	179.7°
C	C1	C11	C2	178.8°	179.8°
C	C1	C2	C3	179.1°	180.0°
C	C1	C2	H	0.9°	0.1°
C1	C	O1	H8	179.0°	180.0°
C	C1	C11	H7	0.8°	0.3°
C10	C11	C1	H7	180.0°	179.5°
C11	C10	C9	H6	180.0°	179.2°
C10	C11	C1	C2	0.4°	0.1°
C11	C10	C9	C3	0.4°	0.8°
C11	C10	C9	H5	179.6°	180.0°
C1	C11	C10	C9	0.0°	0.5°
C11	C1	C2	C3	0.3°	0.2°
C11	C1	C2	H	179.7°	179.7°
C1	C11	C10	H6	180.0°	179.8°
C10	C9	C3	H5	180.0°	179.2°
C10	C9	C3	C2	0.5°	0.5°
C10	C9	C3	C4	178.5°	179.5°
C9	C10	C11	H7	179.9°	180.0°
C1	C2	C3	C9	0.1°	0.0°
C1	C2	C3	H	180.0°	179.9°
C1	C2	C3	C4	178.8°	180.0°
C2	C1	C11	H7	179.6°	179.5°
C9	C3	C2	C4	179.0°	180.0°
C9	C3	C4	C5	75.8°	0.0°
C9	C3	C4	N	105.3°	179.7°
C9	C3	C2	H	179.9°	179.9°
C3	C9	C10	H6	179.6°	180.0°
C2	C3	C4	C5	103.2°	180.0°
C2	C3	C4	N	75.7°	0.3°
C2	C3	C9	H5	179.5°	179.8°
C3	C4	C5	N	178.8°	179.7°
C3	C4	C5	C6	178.7°	180.0°
C3	C4	N	C8	179.0°	180.0°
C4	C3	C2	H	1.2°	0.1°
C3	C4	C5	H1	1.3°	0.1°
C4	C3	C9	H5	1.5°	0.3°
C4	C5	C6	H1	180.0°	179.9°
C5	C4	N	C8	0.1°	0.3°
C4	C5	C6	C7	0.3°	0.0°
C4	C5	C6	H2	179.8°	179.9°
N	C4	C5	C6	0.1°	0.3°
C4	N	C8	C7	0.2°	0.0°
N	C4	C5	H1	179.9°	179.8°
C4	N	C8	H4	179.8°	179.9°
C5	C6	C7	H2	180.0°	179.9°
C5	C6	C7	C8	0.2°	0.3°
C5	C6	C7	H3	179.8°	180.0°
N	C8	C7	C6	0.0°	0.3°
N	C8	C7	H4	180.0°	179.9°
N	C8	C7	H3	180.0°	180.0°
C6	C7	C8	H3	180.0°	179.7°
C7	C6	C5	H1	179.8°	179.9°
C6	C7	C8	H4	180.0°	179.6°
C8	C7	C6	H2	179.8°	179.8°
H1	C5	C6	H2	0.2°	0.0°
H2	C6	C7	H3	0.2°	0.1°
H6	C10	C11	H7	0.1°	0.8°
H6	C10	C9	H5	0.4°	0.8°
H3	C7	C8	H4	0.0°	0.1°

226707

PDB entries from 2024-10-30

PDB statistics

PDBj update info

Contact PDBj

numon