AV2

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PB	O1B	doub	1.52Å	1.50Å
PB	O2B	sing	1.52Å	1.55Å
PB	O3B	sing	1.52Å	1.52Å
PB	O3A	sing	1.62Å	1.61Å
O2B	HOB2	sing	12.79Å	0.95Å
O3B	HOB3	sing	14.04Å	0.95Å
PA	O1A	doub	1.48Å	1.45Å
PA	O2A	sing	1.49Å	1.46Å
PA	O3A	sing	1.60Å	1.62Å
PA	O5'	sing	1.60Å	1.54Å
O2A	HOA2	sing	10.29Å	0.95Å
O5'	C5'	sing	1.45Å	1.42Å
C5'	C4'	sing	1.51Å	1.52Å
C5'	H5'1	sing	0.99Å	1.12Å
C5'	H5'2	sing	0.99Å	1.11Å
C4'	O4'	sing	1.45Å	1.45Å
C4'	C3'	sing	1.54Å	1.49Å
C4'	H4'	sing	0.99Å	1.11Å
O4'	C1'	sing	1.41Å	1.45Å
C3'	O3'	sing	1.41Å	1.45Å
C3'	C2'	sing	1.51Å	1.50Å
C3'	H3'	sing	0.98Å	1.11Å
O3'	V	sing	1.63Å	2.00Å
C2'	O2'	sing	1.42Å	1.43Å
C2'	C1'	sing	1.52Å	1.48Å
C2'	H2'	sing	0.98Å	1.12Å
O2'	V	sing	1.63Å	1.96Å
C1'	N9	sing	1.46Å	1.43Å
C1'	H1'	sing	0.99Å	1.12Å
N9	C8	sing	1.37Å	1.35Å	Aromatic
N9	C4	sing	1.38Å	1.32Å	Aromatic
C8	N7	doub	1.31Å	1.32Å	Aromatic
C8	H8	sing	0.94Å	1.10Å
N7	C5	sing	1.39Å	1.33Å	Aromatic
C5	C6	doub	1.41Å	1.39Å	Aromatic
C5	C4	sing	1.38Å	1.43Å	Aromatic
C6	N6	sing	1.33Å	1.35Å
C6	N1	sing	1.36Å	1.38Å	Aromatic
N6	HN61	sing	0.88Å	1.02Å
N6	HN62	sing	0.88Å	1.02Å
N1	C2	doub	1.34Å	1.38Å	Aromatic
C2	N3	sing	1.33Å	1.33Å	Aromatic
C2	H2	sing	0.95Å	1.10Å
N3	C4	doub	1.34Å	1.40Å	Aromatic
V	O1V	doub	1.63Å	1.62Å
V	O2V	sing	1.63Å	1.59Å
O2V	HV	sing	0.87Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1B	PB	O2B	115.4°	112.7°
O1B	PB	O3B	112.2°	112.7°
O1B	PB	O3A	102.8°	106.1°
O2B	PB	O3B	111.8°	112.6°
O2B	PB	O3A	107.1°	106.1°
PB	O2B	HOB2	115.4°	53.0°
O3B	PB	O3A	106.6°	106.0°
PB	O3B	HOB3	112.2°	68.7°
PB	O3A	PA	132.2°	132.3°
O1A	PA	O2A	117.1°	118.6°
O1A	PA	O3A	111.2°	108.4°
O1A	PA	O5'	102.7°	109.7°
O2A	PA	O3A	108.5°	108.3°
O2A	PA	O5'	114.2°	109.9°
PA	O2A	HOA2	117.1°	57.3°
O3A	PA	O5'	102.1°	100.3°
PA	O5'	C5'	122.5°	116.8°
O5'	C5'	C4'	108.3°	109.6°
O5'	C5'	H5'1	112.6°	109.7°
O5'	C5'	H5'2	112.6°	109.8°
C4'	C5'	H5'1	112.6°	109.9°
C4'	C5'	H5'2	112.7°	109.4°
C5'	C4'	O4'	112.0°	108.9°
C5'	C4'	C3'	118.5°	116.8°
C5'	C4'	H4'	99.4°	108.2°
H5'1	C5'	H5'2	97.8°	108.4°
O4'	C4'	C3'	104.0°	105.0°
O4'	C4'	H4'	115.2°	109.1°
C4'	O4'	C1'	111.3°	112.4°
C3'	C4'	H4'	108.1°	108.7°
C4'	C3'	O3'	111.6°	111.2°
C4'	C3'	C2'	106.0°	103.7°
C4'	C3'	H3'	110.6°	114.0°
O4'	C1'	C2'	102.6°	106.5°
O4'	C1'	N9	108.3°	109.1°
O4'	C1'	H1'	116.5°	108.8°
O3'	C3'	C2'	110.0°	112.2°
O3'	C3'	H3'	106.7°	104.5°
C3'	O3'	V	114.9°	102.2°
C2'	C3'	H3'	112.1°	111.4°
C3'	C2'	O2'	108.4°	111.7°
C3'	C2'	C1'	103.8°	105.2°
C3'	C2'	H2'	115.6°	110.8°
O3'	V	O2'	80.9°	107.4°
O3'	V	O1V	110.0°	109.9°
O3'	V	O2V	136.6°	109.9°
O2'	C2'	C1'	114.3°	111.9°
O2'	C2'	H2'	105.3°	106.6°
C2'	O2'	V	114.2°	101.6°
C1'	C2'	H2'	109.8°	110.7°
C2'	C1'	N9	114.7°	114.2°
C2'	C1'	H1'	110.3°	109.2°
O2'	V	O1V	104.8°	109.9°
O2'	V	O2V	94.3°	109.8°
N9	C1'	H1'	104.8°	109.0°
C1'	N9	C8	129.9°	128.9°
C1'	N9	C4	121.8°	125.3°
C8	N9	C4	108.3°	105.7°
N9	C8	N7	110.4°	113.8°
N9	C8	H8	125.6°	123.0°
N9	C4	C5	106.2°	105.9°
N9	C4	N3	133.6°	127.8°
N7	C8	H8	123.9°	123.2°
C8	N7	C5	107.7°	103.9°
N7	C5	C6	135.0°	131.9°
N7	C5	C4	107.4°	110.7°
C6	C5	C4	117.6°	117.4°
C5	C6	N6	121.7°	123.7°
C5	C6	N1	118.8°	117.3°
C5	C4	N3	120.3°	126.4°
N6	C6	N1	119.5°	118.9°
C6	N6	HN61	121.7°	120.3°
C6	N6	HN62	107.8°	120.0°
C6	N1	C2	122.8°	118.6°
HN61	N6	HN62	107.8°	119.8°
N1	C2	N3	119.8°	129.2°
N1	C2	H2	122.1°	115.3°
N3	C2	H2	118.1°	115.5°
C2	N3	C4	120.8°	111.1°
O1V	V	O2V	112.9°	109.9°
V	O2V	HV	136.5°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1B	PB	O2B	O3B	129.9°	128.8°
O1B	PB	O2B	O3A	113.7°	115.7°
O1B	PB	O3B	O3A	111.8°	115.6°
O1B	PB	O2B	HOB2	180.0°	105.1°
O1B	PB	O3B	HOB3	180.0°	112.0°
O1B	PB	O3A	PA	145.3°	82.8°
O2B	PB	O3B	O3A	116.7°	115.6°
O2B	PB	O3B	HOB3	48.5°	119.1°
O2B	PB	O3A	PA	23.3°	157.2°
O3B	PB	O2B	HOB2	50.1°	126.1°
O3B	PB	O3A	PA	96.5°	37.2°
O3A	PB	O2B	HOB2	66.3°	10.6°
O3A	PB	O3B	HOB3	68.2°	3.6°
PB	O3A	PA	O1A	68.6°	72.5°
PB	O3A	PA	O2A	61.6°	57.4°
PB	O3A	PA	O5'	177.5°	172.5°
O1A	PA	O2A	O3A	126.9°	124.0°
O1A	PA	O2A	O5'	120.0°	127.4°
O1A	PA	O3A	O5'	108.9°	115.0°
O1A	PA	O2A	HOA2	180.0°	99.0°
O1A	PA	O5'	C5'	177.9°	67.6°
O2A	PA	O3A	O5'	120.9°	115.1°
O2A	PA	O5'	C5'	50.1°	64.6°
O3A	PA	O2A	HOA2	53.1°	137.0°
O3A	PA	O5'	C5'	66.7°	178.5°
O5'	PA	O2A	HOA2	59.9°	28.3°
PA	O5'	C5'	C4'	156.2°	172.7°
PA	O5'	C5'	H5'1	30.9°	52.0°
PA	O5'	C5'	H5'2	78.6°	67.1°
O5'	C5'	C4'	H5'1	125.2°	120.6°
O5'	C5'	C4'	H5'2	125.2°	120.5°
O5'	C5'	H5'1	H5'2	118.5°	119.9°
O5'	C5'	C4'	O4'	72.8°	78.6°
O5'	C5'	C4'	C3'	48.3°	162.7°
O5'	C5'	C4'	H4'	165.0°	39.8°
C4'	C5'	H5'1	H5'2	118.6°	119.5°
C5'	C4'	O4'	C3'	129.2°	125.8°
C5'	C4'	O4'	H4'	112.7°	117.9°
C5'	C4'	C3'	H4'	112.0°	122.6°
C5'	C4'	O4'	C1'	135.8°	138.3°
C5'	C4'	C3'	O3'	130.8°	94.4°
C5'	C4'	C3'	C2'	109.5°	144.7°
C5'	C4'	C3'	H3'	12.3°	23.4°
H5'1	C5'	C4'	O4'	162.0°	160.8°
H5'1	C5'	C4'	C3'	76.9°	42.1°
H5'1	C5'	C4'	H4'	39.8°	80.8°
H5'2	C5'	C4'	O4'	52.4°	41.8°
H5'2	C5'	C4'	C3'	173.6°	76.8°
H5'2	C5'	C4'	H4'	69.7°	160.3°
O4'	C4'	C3'	H4'	122.9°	116.6°
O4'	C4'	C3'	O3'	104.0°	144.8°
O4'	C4'	C3'	C2'	15.7°	24.0°
O4'	C4'	C3'	H3'	137.4°	97.4°
C4'	O4'	C1'	C2'	26.2°	4.3°
C4'	O4'	C1'	N9	147.8°	119.4°
C4'	O4'	C1'	H1'	94.4°	121.9°
C3'	C4'	O4'	C1'	6.6°	12.5°
C4'	C3'	O3'	C2'	117.3°	115.7°
C4'	C3'	O3'	H3'	120.9°	123.4°
C4'	C3'	C2'	H3'	120.8°	123.0°
C4'	C3'	O3'	V	132.7°	98.6°
C4'	C3'	C2'	O2'	153.6°	95.2°
C4'	C3'	C2'	C1'	31.7°	26.4°
C4'	C3'	C2'	H2'	88.6°	146.1°
H4'	C4'	O4'	C1'	111.6°	103.8°
H4'	C4'	C3'	O3'	18.9°	28.2°
H4'	C4'	C3'	C2'	138.6°	92.6°
H4'	C4'	C3'	H3'	99.7°	146.0°
O4'	C1'	C2'	C3'	34.5°	19.7°
O4'	C1'	C2'	O2'	152.3°	101.8°
O4'	C1'	C2'	N9	117.2°	120.5°
O4'	C1'	C2'	H1'	124.8°	117.3°
O4'	C1'	C2'	H2'	89.7°	139.4°
O4'	C1'	N9	H1'	125.0°	118.6°
O4'	C1'	N9	C8	63.7°	25.2°
O4'	C1'	N9	C4	115.1°	155.1°
O3'	C3'	C2'	H3'	118.5°	116.8°
O3'	C3'	C2'	O2'	32.8°	25.0°
O3'	C3'	C2'	C1'	89.1°	146.6°
O3'	C3'	C2'	H2'	150.7°	93.8°
C3'	O3'	V	O2'	3.6°	5.7°
C3'	O3'	V	O1V	98.9°	113.8°
C3'	O3'	V	O2V	90.3°	125.1°
C2'	C3'	O3'	V	15.4°	17.1°
C3'	C2'	O2'	C1'	115.2°	117.6°
C3'	C2'	O2'	H2'	124.3°	121.2°
C3'	C2'	C1'	H2'	124.2°	119.7°
C3'	C2'	O2'	V	37.5°	18.3°
C3'	C2'	C1'	N9	151.7°	100.8°
C3'	C2'	C1'	H1'	90.3°	137.0°
H3'	C3'	O3'	V	106.4°	138.0°
H3'	C3'	C2'	O2'	85.6°	141.8°
H3'	C3'	C2'	C1'	152.5°	96.6°
H3'	C3'	C2'	H2'	32.2°	23.1°
O3'	V	O2'	C2'	23.5°	7.8°
O3'	V	O2'	O1V	108.5°	119.5°
O3'	V	O2'	O2V	136.5°	119.5°
O3'	V	O1V	O2V	173.1°	121.0°
O3'	V	O2V	HV	180.0°	52.0°
O2'	C2'	C1'	H2'	118.0°	118.8°
O2'	C2'	C1'	N9	90.5°	137.7°
O2'	C2'	C1'	H1'	27.6°	15.5°
C2'	O2'	V	O1V	85.0°	127.3°
C2'	O2'	V	O2V	160.0°	111.7°
C1'	C2'	O2'	V	77.7°	135.9°
C2'	C1'	N9	H1'	121.1°	122.3°
C2'	C1'	N9	C8	50.2°	93.8°
C2'	C1'	N9	C4	131.0°	85.8°
H2'	C2'	O2'	V	161.7°	102.8°
H2'	C2'	C1'	N9	27.5°	18.9°
H2'	C2'	C1'	H1'	145.6°	103.3°
O2'	V	O1V	O2V	101.3°	121.0°
O2'	V	O2V	HV	98.7°	170.0°
C1'	N9	C8	C4	178.9°	179.7°
C1'	N9	C8	N7	178.7°	179.9°
C1'	N9	C8	H8	1.3°	0.3°
C1'	N9	C4	C5	178.5°	179.9°
C1'	N9	C4	N3	1.1°	0.2°
H1'	C1'	N9	C8	171.3°	143.9°
H1'	C1'	N9	C4	9.9°	36.5°
N9	C8	N7	H8	180.0°	179.8°
N9	C8	N7	C5	0.2°	0.2°
C8	N9	C4	C5	0.5°	0.1°
C8	N9	C4	N3	179.9°	179.9°
C4	N9	C8	N7	0.2°	0.2°
C4	N9	C8	H8	179.7°	180.0°
N9	C4	C5	N7	0.6°	0.0°
N9	C4	C5	C6	179.4°	180.0°
N9	C4	C5	N3	179.6°	180.0°
N9	C4	N3	C2	179.6°	180.0°
C8	N7	C5	C6	179.5°	179.9°
C8	N7	C5	C4	0.5°	0.1°
H8	C8	N7	C5	179.8°	180.0°
N7	C5	C6	C4	180.0°	180.0°
N7	C5	C6	N6	0.1°	0.0°
N7	C5	C6	N1	179.7°	180.0°
N7	C5	C4	N3	179.7°	180.0°
C5	C6	N6	N1	179.8°	180.0°
C5	C6	N6	HN61	180.0°	180.0°
C5	C6	N6	HN62	54.8°	0.0°
C5	C6	N1	C2	0.0°	0.0°
C6	C5	C4	N3	0.2°	0.0°
C4	C5	C6	N6	179.9°	180.0°
C4	C5	C6	N1	0.3°	0.0°
C5	C4	N3	C2	0.0°	0.1°
C6	N6	HN61	HN62	125.2°	180.0°
N6	C6	N1	C2	179.8°	180.0°
N1	C6	N6	HN61	0.2°	0.0°
N1	C6	N6	HN62	125.0°	180.0°
C6	N1	C2	N3	0.3°	0.0°
C6	N1	C2	H2	179.7°	180.0°
N1	C2	N3	H2	180.0°	180.0°
N1	C2	N3	C4	0.3°	0.1°
H2	C2	N3	C4	179.6°	179.9°
O1V	V	O2V	HV	9.4°	69.0°

Definition date:	2002-08-05
Last modified:	2026-07-31
Release status:	REL
Processing site:	RCSB
Derived from:	1M7G