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AV1

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
BR1C8Asing1.89Å1.91Å
O3PAsing1.61Å1.65Å
O3PNsing1.61Å1.67Å
PAO1Asing1.61Å1.61Å
PAO2Adoub1.48Å1.48Å
PAO5'sing1.61Å1.65Å
PNO1Ndoub1.48Å1.48Å
PNO2Nsing1.61Å1.66Å
PNO5Dsing1.61Å1.62Å
C1'C2'sing1.55Å1.56Å
C1'O4'sing1.44Å1.49Å
C1'N9Asing1.47Å1.56Å
N1AC2Adoub1.32Å1.34ÅAromatic
N1AC6Asing1.33Å1.35ÅAromatic
C1DC2Dsing1.55Å1.54Å
C1DO4Dsing1.44Å1.45Å
C2'O2'sing1.43Å1.44Å
C2'C3'sing1.55Å1.55Å
C2AN3Asing1.32Å1.33ÅAromatic
C2DO2Dsing1.43Å1.45Å
C2DC3Dsing1.55Å1.55Å
C3'O3'sing1.43Å1.45Å
C3'C4'sing1.54Å1.55Å
N3AC4Adoub1.33Å1.35ÅAromatic
C3DO3Dsing1.43Å1.45Å
C3DC4Dsing1.54Å1.54Å
C4'O4'sing1.44Å1.49Å
C4'C5'sing1.53Å1.58Å
C4AC5Asing1.41Å1.41ÅAromatic
C4AN9Asing1.37Å1.35ÅAromatic
C4DO4Dsing1.44Å1.48Å
C4DC5Dsing1.53Å1.55Å
C5'O5'sing1.43Å1.45Å
C5AC6Adoub1.40Å1.39ÅAromatic
C5AN7Asing1.36Å1.32ÅAromatic
C5DO5Dsing1.43Å1.42Å
C6AN6Asing1.38Å1.34Å
N7AC8Adoub1.30Å1.33ÅAromatic
C8AN9Asing1.36Å1.34ÅAromatic
C1'H1'sing1.09Å1.10Å
C1DH1Dsing1.09Å1.10Å
C1DH1DAsing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C2AH2Asing1.08Å1.08Å
C2DH2Dsing1.09Å1.10Å
O2DHO2Dsing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3DH3Dsing1.09Å1.10Å
O3DHO3Dsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C4DH4Dsing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5DH5Dsing1.09Å1.10Å
C5DH5DAsing1.09Å1.10Å
N6AHN6Asing0.97Å1.00Å
N6AHN6Bsing0.97Å1.00Å
O1AH11Asing0.97Å0.95Å
O2NH12Asing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
BR1C8AN7A121.7°125.0°
BR1C8AN9A125.9°125.1°
PAO3PN124.4°134.0°
O3PAO1A106.2°109.5°
O3PAO2A111.3°109.5°
O3PAO5'106.8°109.5°
O3PNO1N111.7°109.5°
O3PNO2N108.2°109.5°
O3PNO5D107.7°109.5°
O1APAO2A112.2°109.5°
O1APAO5'104.7°109.5°
PAO1AH11A109.5°114.0°
O2APAO5'115.0°109.5°
PAO5'C5'125.7°123.0°
O1NPNO2N113.2°109.4°
O1NPNO5D108.8°109.5°
O2NPNO5D106.9°109.5°
PNO2NH12A109.5°114.0°
PNO5DC5D119.4°123.0°
C2'C1'O4'104.5°103.5°
C2'C1'N9A108.1°110.6°
C1'C2'O2'110.1°110.9°
C1'C2'C3'104.7°102.1°
C2'C1'H1'120.6°110.6°
C1'C2'H2'113.0°110.9°
O4'C1'N9A124.5°110.6°
C1'O4'C4'102.8°107.0°
O4'C1'H1'102.2°110.6°
C1'N9AC4A129.1°126.3°
C1'N9AC8A125.5°126.2°
N9AC1'H1'98.1°110.7°
C2AN1AC6A121.6°121.1°
N1AC2AN3A122.2°122.5°
N1AC2AH2A118.9°118.8°
N1AC6AC5A117.4°118.5°
N1AC6AN6A122.0°120.7°
C2DC1DO4D102.8°103.5°
C1DC2DO2D110.4°110.9°
C1DC2DC3D103.5°102.1°
C2DC1DH1D111.8°110.6°
C2DC1DH1DA111.8°110.6°
C1DC2DH2D113.0°110.8°
C1DO4DC4D104.9°107.0°
O4DC1DH1D111.8°110.6°
O4DC1DH1DA111.8°110.6°
O2'C2'C3'112.0°110.9°
O2'C2'H2'105.9°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'111.9°110.5°
C2'C3'C4'101.6°104.2°
C3'C2'H2'111.2°110.9°
C2'C3'H3'114.3°110.5°
C2AN3AC4A120.0°120.6°
N3AC2AH2A118.9°118.7°
O2DC2DC3D110.3°111.0°
O2DC2DH2D106.6°110.8°
C2DO2DHO2D109.5°114.0°
C2DC3DO3D113.0°110.5°
C2DC3DC4D103.5°104.2°
C3DC2DH2D113.1°110.9°
C2DC3DH3D111.8°110.5°
O3'C3'C4'113.0°110.5°
O3'C3'H3'103.2°110.5°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'100.7°107.3°
C3'C4'C5'110.6°109.9°
C4'C3'H3'113.3°110.6°
C3'C4'H4'119.2°109.8°
N3AC4AC5A118.7°119.1°
N3AC4AN9A133.7°134.9°
O3DC3DC4D111.3°110.5°
O3DC3DH3D104.0°110.4°
C3DO3DHO3D109.5°114.0°
C3DC4DO4D107.0°107.3°
C3DC4DC5D105.8°109.9°
C4DC3DH3D113.5°110.6°
C3DC4DH4D114.1°109.9°
O4'C4'C5'120.9°109.9°
O4'C4'H4'108.5°109.9°
C4'C5'O5'113.9°109.5°
C5'C4'H4'98.2°110.0°
C4'C5'H5'108.0°109.5°
C4'C5'H5'A108.0°109.4°
C5AC4AN9A107.6°106.0°
C4AC5AC6A120.0°118.2°
C4AC5AN7A108.2°107.1°
C4AN9AC8A105.4°107.5°
O4DC4DC5D111.7°109.9°
O4DC4DH4D108.6°109.9°
C4DC5DO5D111.5°109.5°
C5DC4DH4D109.7°110.0°
C4DC5DH5D108.8°109.5°
C4DC5DH5DA108.8°109.5°
O5'C5'H5'108.0°109.5°
O5'C5'H5'A108.0°109.5°
C6AC5AN7A131.8°134.7°
C5AC6AN6A120.6°120.8°
C5AN7AC8A106.5°109.5°
O5DC5DH5D108.8°109.4°
O5DC5DH5DA108.8°109.5°
C6AN6AHN6A109.5°120.0°
C6AN6AHN6B109.5°120.0°
N7AC8AN9A112.4°109.9°
H1DC1DH1DA107.1°110.7°
H5'C5'H5'A110.9°109.5°
H5DC5DH5DA110.1°109.5°
HN6AN6AHN6B109.4°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
BR1C8AN9AC1'2.1°0.0°
BR1C8AN9AC4A179.8°180.0°
BR1C8AN7AC5A180.0°180.0°
BR1C8AN7AN9A179.4°180.0°
O3PAO1AO2A121.8°120.0°
O3PAO1AO5'112.8°120.0°
O3PAO2AO5'121.7°120.0°
PAO3PNO1N53.7°45.0°
PAO3PNO2N178.9°75.0°
PAO3PNO5D65.8°165.0°
O3PAO5'C5'137.8°175.0°
O3PAO1AH11A121.8°60.0°
PNO3PAO1A163.2°80.0°
PNO3PAO2A74.4°40.0°
PNO3PAO5'51.9°160.0°
O3PNO1NO2N122.5°120.0°
O3PNO1NO5D118.8°120.0°
O3PNO2NO5D115.8°120.0°
O3PNO5DC5D64.0°175.0°
O3PNO2NH12A124.4°60.0°
O1APAO2AO5'119.5°120.0°
O1APAO5'C5'109.8°65.0°
O2APAO5'C5'13.8°55.0°
O2APAO1AH11A0.0°180.0°
PAO5'C5'C4'106.5°180.0°
PAO5'C5'H5'13.5°60.0°
PAO5'C5'H5'A133.5°60.0°
O5'PAO1AH11A125.4°60.0°
O1NPNO2NO5D119.8°119.9°
O1NPNO5DC5D174.7°55.0°
O1NPNO2NH12A0.0°180.0°
O2NPNO5DC5D52.2°64.9°
PNO5DC5DC4D95.3°180.0°
PNO5DC5DH5D24.7°60.0°
PNO5DC5DH5DA144.7°59.9°
O5DPNO2NH12A119.8°60.0°
C2'C1'O4'N9A124.6°118.5°
C2'C1'O4'H1'126.4°118.5°
C2'C1'N9AH1'126.0°123.0°
C1'C2'O2'C3'116.1°112.7°
C1'C2'O2'H2'122.5°123.6°
C1'C2'C3'H2'122.4°118.2°
C1'C2'C3'O3'142.3°97.8°
C1'C2'C3'C4'21.4°20.9°
C2'C1'O4'C4'36.9°40.0°
C2'C1'N9AC4A49.2°105.0°
C2'C1'N9AC8A127.9°75.0°
C1'C2'O2'HO2'180.0°179.9°
C1'C2'C3'H3'100.9°139.7°
O4'C1'N9AH1'111.0°122.9°
O4'C1'C2'O2'129.1°155.2°
O4'C1'C2'C3'8.6°37.0°
C1'O4'C4'C3'50.8°26.5°
C1'O4'C4'C5'172.9°145.9°
O4'C1'N9AC4A73.8°140.9°
O4'C1'N9AC8A109.0°39.1°
O4'C1'C2'H2'112.6°81.2°
C1'O4'C4'H4'75.2°92.9°
N9AC1'C2'O2'96.4°86.3°
N9AC1'C2'C3'143.1°155.5°
C1'N9AC4AN3A2.1°0.1°
N9AC1'O4'C4'161.5°158.6°
C1'N9AC4AC5A178.3°180.0°
C1'N9AC4AC8A177.6°179.9°
C1'N9AC8AN7A178.5°180.0°
N9AC1'C2'H2'21.8°37.3°
N1AC2AN3AH2A180.0°179.9°
N1AC2AN3AC4A0.1°0.0°
C2AN1AC6AC5A0.3°0.0°
C2AN1AC6AN6A179.9°179.9°
C6AN1AC2AN3A0.2°0.0°
N1AC6AC5AC4A0.2°0.0°
N1AC6AC5AN6A179.9°179.9°
N1AC6AC5AN7A179.9°180.0°
C6AN1AC2AH2A179.8°179.9°
N1AC6AN6AHN6A0.0°0.1°
N1AC6AN6AHN6B120.0°180.0°
C2DC1DO4DH1D120.0°118.5°
C2DC1DO4DH1DA120.0°118.4°
C1DC2DO2DC3D113.8°112.8°
C1DC2DO2DH2D123.1°123.5°
C1DC2DC3DH2D122.7°118.1°
C1DC2DC3DO3D139.8°97.8°
C1DC2DC3DC4D19.3°20.9°
C2DC1DO4DC4D43.1°40.0°
C2DC1DH1DH1DA122.7°122.9°
C1DC2DO2DHO2D180.0°61.4°
C1DC2DC3DH3D103.2°139.7°
O4DC1DC2DO2D79.5°155.3°
O4DC1DC2DC3D38.6°37.0°
C1DO4DC4DC3D31.0°26.5°
C1DO4DC4DC5D84.3°145.9°
O4DC1DH1DH1DA122.7°123.0°
O4DC1DC2DH2D161.3°81.2°
C1DO4DC4DH4D154.6°92.9°
O2'C2'C3'H2'118.3°123.5°
O2'C2'C3'O3'22.9°20.5°
O2'C2'C3'C4'97.9°139.1°
O2'C2'C1'H1'15.1°36.7°
O2'C2'C3'H3'139.7°102.1°
C2'C3'O3'C4'114.0°114.7°
C2'C3'O3'H3'123.3°122.6°
C2'C3'C4'H3'123.0°118.7°
C2'C3'C4'O4'44.0°2.0°
C2'C3'C4'C5'173.1°121.5°
C3'C2'C1'H1'105.4°81.5°
C3'C2'O2'HO2'63.9°67.3°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'74.3°117.4°
C2AN3AC4AC5A0.0°0.0°
C2AN3AC4AN9A179.6°180.0°
O2DC2DC3DH2D119.2°123.6°
O2DC2DC3DO3D21.7°20.4°
O2DC2DC3DC4D98.8°139.1°
O2DC2DC1DH1D160.5°86.2°
O2DC2DC1DH1DA40.5°36.8°
O2DC2DC3DH3D138.7°102.1°
C2DC3DO3DC4D115.9°114.8°
C2DC3DO3DH3D121.5°122.5°
C2DC3DC4DH3D121.4°118.8°
C2DC3DC4DO4D6.1°2.0°
C2DC3DC4DC5D113.2°121.5°
C3DC2DC1DH1D81.4°155.5°
C3DC2DC1DH1DA158.6°81.5°
C3DC2DO2DHO2D66.2°174.2°
C2DC3DO3DHO3D180.0°61.5°
C2DC3DC4DH4D126.2°117.4°
O3'C3'C4'H3'116.9°122.6°
O3'C3'C4'O4'164.1°120.7°
O3'C3'C4'C5'66.8°119.9°
O3'C3'C2'H2'95.3°144.0°
O3'C3'C4'H4'45.8°1.3°
C3'C4'O4'C5'122.1°119.5°
C3'C4'O4'H4'125.9°119.4°
C3'C4'C5'H4'125.4°121.0°
C3'C4'C5'O5'141.5°175.0°
C4'C3'C2'H2'143.8°97.4°
C4'C3'O3'HO3'66.0°176.3°
C3'C4'C5'H5'98.5°55.0°
C3'C4'C5'H5'A21.5°65.0°
N3AC4AC5AN9A179.7°179.9°
N3AC4AC5AC6A0.0°0.1°
N3AC4AC5AN7A180.0°180.0°
N3AC4AN9AC8A179.7°180.0°
C4AN3AC2AH2A179.9°179.9°
O3DC3DC4DH3D117.0°122.6°
O3DC3DC4DO4D115.6°120.7°
O3DC3DC4DC5D125.2°119.8°
O3DC3DC2DH2D97.5°144.0°
O3DC3DC4DH4D4.5°1.3°
C3DC4DO4DC5D115.4°119.4°
C3DC4DO4DH4D123.6°119.4°
C3DC4DC5DH4D123.5°121.1°
C3DC4DC5DO5D173.1°175.0°
C4DC3DC2DH2D142.0°97.3°
C4DC3DO3DHO3D64.1°176.2°
C3DC4DC5DH5D53.1°55.0°
C3DC4DC5DH5DA67.0°65.0°
O4'C4'C5'H4'117.3°121.1°
O4'C4'C5'O5'24.3°67.1°
C4'O4'C1'H1'89.6°78.5°
O4'C4'C3'H3'79.0°116.7°
O4'C4'C5'H5'144.3°172.9°
O4'C4'C5'H5'A95.7°52.8°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'50.1°2.7°
C4'C5'H5'H5'A118.2°120.0°
C4AC5AC6AN7A180.0°180.0°
C4AC5AC6AN6A180.0°180.0°
C4AC5AN7AC8A0.2°0.0°
C5AC4AN9AC8A0.7°0.1°
N9AC4AC5AC6A179.6°180.0°
N9AC4AC5AN7A0.3°0.0°
C4AN9AC8AN7A0.8°0.1°
C4AN9AC1'H1'175.2°18.0°
O4DC4DC5DH4D120.4°121.1°
O4DC4DC5DO5D70.9°67.2°
C4DO4DC1DH1D76.9°158.5°
C4DO4DC1DH1DA163.1°78.4°
O4DC4DC3DH3D127.5°116.7°
O4DC4DC5DH5D169.1°172.9°
O4DC4DC5DH5DA49.1°52.9°
C4DC5DO5DH5D120.0°120.0°
C4DC5DO5DH5DA120.0°120.0°
C5DC4DC3DH3D8.2°2.7°
C4DC5DH5DH5DA119.2°120.0°
O5'C5'C4'H4'93.0°54.0°
O5'C5'H5'H5'A118.2°120.0°
C6AC5AN7AC8A179.9°180.0°
C5AC6AN6AHN6A179.8°180.0°
C5AC6AN6AHN6B59.9°0.1°
N7AC5AC6AN6A0.0°0.1°
C5AN7AC8AN9A0.6°0.0°
O5DC5DC4DH4D49.5°53.9°
O5DC5DH5DH5DA119.1°120.0°
C6AN6AHN6AHN6B120.0°179.9°
C8AN9AC1'H1'1.9°162.0°
H1'C1'C2'H2'133.4°160.3°
H1DC1DC2DH2D41.3°37.3°
H1DAC1DC2DH2D78.7°160.3°
H2'C2'O2'HO2'57.5°56.3°
H2'C2'C3'H3'21.5°21.4°
H2DC2DO2DHO2D56.9°62.1°
H2DC2DC3DH3D19.5°21.5°
H3'C3'O3'HO3'56.7°61.1°
H3'C3'C4'H4'162.6°123.9°
H3DC3DO3DHO3D58.5°61.1°
H3DC3DC4DH4D112.4°123.9°
H4'C4'C5'H5'27.0°66.0°
H4'C4'C5'H5'A147.0°173.9°
H4DC4DC5DH5D70.5°66.0°
H4DC4DC5DH5DA169.5°173.9°

225946

PDB entries from 2024-10-09

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