ATY

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
PA	O1A	doub	1.48Å	1.49Å
PA	O2A	sing	1.61Å	1.49Å
PA	O3A	sing	1.61Å	1.66Å
PA	O5'	sing	1.61Å	1.60Å
O2A	HPA2	sing	0.97Å	0.95Å
O3A	PB	sing	1.61Å	1.58Å
PB	O1B	doub	1.48Å	1.60Å
PB	O2B	sing	1.61Å	1.49Å
PB	O3B	sing	1.61Å	1.51Å
O2B	HPB2	sing	0.97Å	0.95Å
O3B	HPB3	sing	0.97Å	0.95Å
O5'	C5'	sing	1.43Å	1.46Å
C5'	C4'	sing	1.53Å	1.53Å
C5'	H5'2	sing	1.09Å	1.11Å
C5'	H5'1	sing	1.09Å	1.11Å
C4'	O4'	sing	1.44Å	1.48Å
C4'	C3'	sing	1.54Å	1.55Å
C4'	H4'	sing	1.09Å	1.11Å
O4'	C1'	sing	1.44Å	1.43Å
C3'	O3'	sing	1.45Å	1.46Å
C3'	C2'	sing	1.55Å	1.54Å
C3'	H3'	sing	1.09Å	1.11Å
O3'	CR	sing	1.34Å	1.43Å
CR	OR	doub	1.21Å	1.26Å
CR	CHR	sing	1.51Å	1.52Å
CHR	HHR3	sing	1.09Å	1.11Å
CHR	HHR2	sing	1.09Å	1.12Å
CHR	HHR1	sing	1.09Å	1.11Å
C2'	C1'	sing	1.54Å	1.51Å
C2'	H2'2	sing	1.09Å	1.11Å
C2'	H2'1	sing	1.09Å	1.12Å
C1'	N1	sing	1.46Å	1.51Å
C1'	H1'	sing	1.09Å	1.12Å
N1	C2	sing	1.34Å	1.40Å
N1	C6	sing	1.37Å	1.41Å
C2	O2	doub	1.22Å	1.23Å
C2	N3	sing	1.35Å	1.39Å
N3	C4	sing	1.35Å	1.41Å
N3	H3	sing	0.97Å	1.02Å
C4	O4	doub	1.22Å	1.23Å
C4	C5	sing	1.42Å	1.44Å
C5	C5M	sing	1.51Å	1.48Å
C5	C6	doub	1.35Å	1.33Å
C5M	H5M3	sing	1.09Å	1.11Å
C5M	H5M2	sing	1.09Å	1.12Å
C5M	H5M1	sing	1.09Å	1.11Å
C6	H6	sing	1.08Å	1.10Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1A	PA	O2A	111.2°	109.5°
O1A	PA	O3A	109.0°	109.5°
O1A	PA	O5'	111.6°	109.5°
O2A	PA	O3A	110.4°	109.5°
O2A	PA	O5'	110.1°	109.4°
PA	O2A	HPA2	111.2°	106.8°
O3A	PA	O5'	104.3°	109.4°
PA	O3A	PB	136.2°	106.8°
PA	O5'	C5'	125.1°	106.8°
O3A	PB	O1B	99.8°	109.4°
O3A	PB	O2B	112.8°	109.5°
O3A	PB	O3B	112.5°	109.5°
O1B	PB	O2B	110.2°	109.5°
O1B	PB	O3B	110.8°	109.4°
O2B	PB	O3B	110.4°	109.5°
PB	O2B	HPB2	112.7°	106.8°
PB	O3B	HPB3	112.4°	106.8°
O5'	C5'	C4'	106.6°	109.5°
O5'	C5'	H5'2	113.3°	109.5°
O5'	C5'	H5'1	113.3°	109.5°
C4'	C5'	H5'2	113.3°	109.4°
C4'	C5'	H5'1	113.3°	109.4°
C5'	C4'	O4'	110.2°	110.4°
C5'	C4'	C3'	112.9°	110.7°
C5'	C4'	H4'	105.6°	110.3°
H5'2	C5'	H5'1	97.2°	109.5°
O4'	C4'	C3'	106.2°	104.7°
O4'	C4'	H4'	112.4°	110.4°
C4'	O4'	C1'	109.7°	105.5°
C3'	C4'	H4'	109.7°	110.3°
C4'	C3'	O3'	112.9°	110.6°
C4'	C3'	C2'	100.2°	104.2°
C4'	C3'	H3'	113.9°	110.5°
O4'	C1'	C2'	103.6°	104.7°
O4'	C1'	N1	115.7°	110.5°
O4'	C1'	H1'	110.9°	110.4°
O3'	C3'	C2'	110.9°	110.5°
O3'	C3'	H3'	103.7°	110.5°
C3'	O3'	CR	116.0°	120.1°
C2'	C3'	H3'	115.7°	110.5°
C3'	C2'	C1'	103.7°	104.1°
C3'	C2'	H2'2	114.5°	110.6°
C3'	C2'	H2'1	114.4°	110.5°
O3'	CR	OR	124.8°	120.0°
O3'	CR	CHR	121.4°	120.1°
OR	CR	CHR	113.8°	120.0°
CR	CHR	HHR3	121.3°	109.5°
CR	CHR	HHR2	107.9°	109.5°
CR	CHR	HHR1	108.0°	109.5°
HHR3	CHR	HHR2	108.0°	109.4°
HHR3	CHR	HHR1	108.0°	109.4°
HHR2	CHR	HHR1	101.9°	109.5°
C1'	C2'	H2'2	114.4°	110.5°
C1'	C2'	H2'1	114.4°	110.5°
C2'	C1'	N1	113.5°	110.4°
C2'	C1'	H1'	113.2°	110.3°
H2'2	C2'	H2'1	96.0°	110.5°
N1	C1'	H1'	100.4°	110.3°
C1'	N1	C2	120.6°	119.7°
C1'	N1	C6	119.6°	119.7°
C2	N1	C6	119.8°	120.6°
N1	C2	O2	124.0°	119.5°
N1	C2	N3	113.7°	121.0°
N1	C6	C5	124.4°	119.7°
N1	C6	H6	121.2°	120.1°
O2	C2	N3	122.3°	119.6°
C2	N3	C4	129.0°	120.3°
C2	N3	H3	114.6°	119.9°
C4	N3	H3	116.4°	119.8°
N3	C4	O4	120.5°	120.3°
N3	C4	C5	112.9°	119.4°
O4	C4	C5	126.5°	120.3°
C4	C5	C5M	122.1°	120.5°
C4	C5	C6	120.2°	119.1°
C5M	C5	C6	117.6°	120.4°
C5	C5M	H5M3	122.2°	109.5°
C5	C5M	H5M2	107.7°	109.5°
C5	C5M	H5M1	107.7°	109.5°
C5	C6	H6	114.5°	120.2°
H5M3	C5M	H5M2	107.7°	109.4°
H5M3	C5M	H5M1	107.7°	109.5°
H5M2	C5M	H5M1	102.1°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1A	PA	O2A	O3A	121.2°	120.0°
O1A	PA	O2A	O5'	124.2°	120.1°
O1A	PA	O3A	O5'	119.4°	120.1°
O1A	PA	O2A	HPA2	179.9°	180.0°
O1A	PA	O3A	PB	57.4°	60.0°
O1A	PA	O5'	C5'	179.9°	60.0°
O2A	PA	O3A	O5'	118.2°	119.9°
O2A	PA	O3A	PB	179.8°	60.0°
O2A	PA	O5'	C5'	55.9°	60.0°
O3A	PA	O2A	HPA2	58.9°	60.0°
PA	O3A	PB	O1B	2.1°	60.0°
PA	O3A	PB	O2B	114.8°	180.0°
PA	O3A	PB	O3B	119.6°	60.0°
O3A	PA	O5'	C5'	62.5°	180.0°
O5'	PA	O2A	HPA2	55.7°	60.0°
O5'	PA	O3A	PB	62.0°	179.9°
PA	O5'	C5'	C4'	160.6°	180.0°
PA	O5'	C5'	H5'2	74.1°	60.0°
PA	O5'	C5'	H5'1	35.4°	60.1°
O3A	PB	O1B	O2B	118.8°	120.0°
O3A	PB	O1B	O3B	118.7°	120.0°
O3A	PB	O2B	O3B	126.7°	120.0°
O3A	PB	O2B	HPB2	179.9°	180.0°
O3A	PB	O3B	HPB3	179.9°	60.0°
O1B	PB	O2B	O3B	122.7°	120.0°
O1B	PB	O2B	HPB2	69.4°	60.0°
O1B	PB	O3B	HPB3	69.2°	179.9°
O2B	PB	O3B	HPB3	53.2°	60.0°
O3B	PB	O2B	HPB2	53.3°	60.0°
O5'	C5'	C4'	H5'2	125.3°	120.0°
O5'	C5'	C4'	H5'1	125.3°	120.0°
O5'	C5'	H5'2	H5'1	119.2°	120.0°
O5'	C5'	C4'	O4'	71.4°	61.4°
O5'	C5'	C4'	C3'	47.1°	176.9°
O5'	C5'	C4'	H4'	166.9°	60.8°
C4'	C5'	H5'2	H5'1	119.2°	120.0°
C5'	C4'	O4'	C3'	122.6°	119.1°
C5'	C4'	O4'	H4'	117.5°	122.2°
C5'	C4'	C3'	H4'	117.5°	122.3°
C5'	C4'	O4'	C1'	123.0°	159.4°
C5'	C4'	C3'	O3'	144.7°	98.5°
C5'	C4'	C3'	C2'	97.3°	142.7°
C5'	C4'	C3'	H3'	26.8°	24.1°
H5'2	C5'	C4'	O4'	163.3°	178.6°
H5'2	C5'	C4'	C3'	78.2°	63.1°
H5'2	C5'	C4'	H4'	41.6°	59.2°
H5'1	C5'	C4'	O4'	53.8°	58.6°
H5'1	C5'	C4'	C3'	172.3°	56.9°
H5'1	C5'	C4'	H4'	67.8°	179.2°
O4'	C4'	C3'	H4'	121.7°	118.7°
O4'	C4'	C3'	O3'	94.4°	142.5°
O4'	C4'	C3'	C2'	23.5°	23.8°
O4'	C4'	C3'	H3'	147.7°	94.9°
C4'	O4'	C1'	C2'	24.9°	40.4°
C4'	O4'	C1'	N1	149.8°	159.3°
C4'	O4'	C1'	H1'	96.8°	78.4°
C3'	C4'	O4'	C1'	0.4°	40.3°
C4'	C3'	O3'	C2'	111.5°	114.8°
C4'	C3'	O3'	H3'	123.7°	122.7°
C4'	C3'	C2'	H3'	122.9°	118.7°
C4'	C3'	O3'	CR	156.7°	151.9°
C4'	C3'	C2'	C1'	38.3°	0.1°
C4'	C3'	C2'	H2'2	87.0°	118.5°
C4'	C3'	C2'	H2'1	163.5°	118.8°
H4'	C4'	O4'	C1'	119.5°	78.3°
H4'	C4'	C3'	O3'	27.2°	23.8°
H4'	C4'	C3'	C2'	145.2°	95.0°
H4'	C4'	C3'	H3'	90.6°	146.4°
O4'	C1'	C2'	C3'	40.0°	23.9°
O4'	C1'	C2'	N1	126.2°	119.0°
O4'	C1'	C2'	H1'	120.2°	118.8°
O4'	C1'	C2'	H2'2	85.4°	94.8°
O4'	C1'	C2'	H2'1	165.2°	142.6°
O4'	C1'	N1	H1'	119.4°	122.4°
O4'	C1'	N1	C2	104.4°	55.1°
O4'	C1'	N1	C6	76.5°	124.6°
O3'	C3'	C2'	H3'	117.7°	122.5°
C3'	O3'	CR	OR	173.3°	0.1°
C3'	O3'	CR	CHR	8.4°	180.0°
O3'	C3'	C2'	C1'	81.2°	118.7°
O3'	C3'	C2'	H2'2	153.6°	122.6°
O3'	C3'	C2'	H2'1	44.1°	0.0°
C2'	C3'	O3'	CR	91.9°	93.3°
C3'	C2'	C1'	H2'2	125.3°	118.7°
C3'	C2'	C1'	H2'1	125.3°	118.7°
C3'	C2'	H2'2	H2'1	120.3°	122.7°
C3'	C2'	C1'	N1	166.2°	142.9°
C3'	C2'	C1'	H1'	80.2°	94.8°
H3'	C3'	O3'	CR	33.0°	29.2°
H3'	C3'	C2'	C1'	161.1°	118.8°
H3'	C3'	C2'	H2'2	35.9°	0.1°
H3'	C3'	C2'	H2'1	73.6°	122.6°
O3'	CR	OR	CHR	178.4°	179.9°
O3'	CR	CHR	HHR3	180.0°	180.0°
O3'	CR	CHR	HHR2	54.7°	60.0°
O3'	CR	CHR	HHR1	54.7°	60.0°
OR	CR	CHR	HHR3	1.5°	0.1°
OR	CR	CHR	HHR2	123.7°	120.1°
OR	CR	CHR	HHR1	126.8°	119.9°
CR	CHR	HHR3	HHR2	125.2°	120.0°
CR	CHR	HHR3	HHR1	125.3°	120.1°
CR	CHR	HHR2	HHR1	113.6°	120.0°
HHR3	CHR	HHR2	HHR1	113.6°	119.9°
C1'	C2'	H2'2	H2'1	120.3°	122.7°
C2'	C1'	N1	H1'	121.1°	122.2°
C2'	C1'	N1	C2	136.0°	60.3°
C2'	C1'	N1	C6	43.1°	120.0°
H2'2	C2'	C1'	N1	40.9°	24.3°
H2'2	C2'	C1'	H1'	154.5°	146.5°
H2'1	C2'	C1'	N1	68.5°	98.4°
H2'1	C2'	C1'	H1'	45.0°	23.8°
C1'	N1	C2	C6	179.1°	179.7°
C1'	N1	C2	O2	0.2°	0.4°
C1'	N1	C2	N3	179.5°	179.8°
C1'	N1	C6	C5	179.1°	180.0°
C1'	N1	C6	H6	0.9°	0.1°
H1'	C1'	N1	C2	14.9°	177.5°
H1'	C1'	N1	C6	164.2°	2.2°
N1	C2	O2	N3	179.7°	179.4°
N1	C2	N3	C4	0.4°	0.6°
N1	C2	N3	H3	179.7°	179.7°
C2	N1	C6	C5	0.0°	0.3°
C2	N1	C6	H6	180.0°	179.8°
C6	N1	C2	O2	179.3°	180.0°
C6	N1	C2	N3	0.4°	0.6°
N1	C6	C5	C4	0.4°	0.0°
N1	C6	C5	C5M	178.4°	180.0°
N1	C6	C5	H6	180.0°	179.9°
O2	C2	N3	C4	179.4°	180.0°
O2	C2	N3	H3	0.6°	0.3°
C2	N3	C4	H3	180.0°	179.7°
C2	N3	C4	O4	179.8°	179.7°
C2	N3	C4	C5	0.0°	0.3°
N3	C4	O4	C5	179.8°	180.0°
N3	C4	C5	C5M	178.4°	180.0°
N3	C4	C5	C6	0.4°	0.0°
H3	N3	C4	O4	0.2°	0.0°
H3	N3	C4	C5	179.9°	180.0°
O4	C4	C5	C5M	1.4°	0.0°
O4	C4	C5	C6	179.8°	180.0°
C4	C5	C5M	C6	178.8°	179.9°
C4	C5	C5M	H5M3	180.0°	0.1°
C4	C5	C5M	H5M2	54.7°	120.0°
C4	C5	C5M	H5M1	54.7°	119.9°
C4	C5	C6	H6	179.6°	180.0°
C5	C5M	H5M3	H5M2	125.3°	120.0°
C5	C5M	H5M3	H5M1	125.3°	120.0°
C5	C5M	H5M2	H5M1	113.2°	120.0°
C5M	C5	C6	H6	1.6°	0.1°
C6	C5	C5M	H5M3	1.2°	180.0°
C6	C5	C5M	H5M2	124.1°	60.0°
C6	C5	C5M	H5M1	126.5°	60.0°
H5M3	C5M	H5M2	H5M1	113.3°	120.0°

Definition date:	2000-03-09
Last modified:	2011-06-04
Release status:	REL
Processing site:	EBI
Derived from:	1DZT