ATM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP1 | doub | 1.48Å | 1.45Å | |
| P | OP2 | sing | 1.61Å | 1.47Å | |
| P | OP3 | sing | 1.61Å | 1.57Å | |
| P | O5' | sing | 1.61Å | 1.57Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.41Å | |
| C5' | C4' | sing | 1.53Å | 1.55Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.45Å | 1.43Å | |
| C4' | C3' | sing | 1.55Å | 1.53Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C3' | N3' | sing | 1.46Å | 1.44Å | |
| C3' | C2' | sing | 1.55Å | 1.50Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| N3' | N4' | doub | 1.12Å | 1.23Å | |
| N4' | N5' | doub | 1.12Å | 1.09Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C2' | H2'' | sing | 1.09Å | 1.11Å | |
| C1' | N1 | sing | 1.47Å | 1.46Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N1 | C2 | sing | 1.35Å | 1.41Å | |
| N1 | C6 | sing | 1.37Å | 1.39Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N3 | sing | 1.35Å | 1.39Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.02Å | |
| C4 | O4 | doub | 1.22Å | 1.21Å | |
| C4 | C5 | sing | 1.41Å | 1.44Å | |
| C5 | C5A | sing | 1.51Å | 1.51Å | |
| C5 | C6 | doub | 1.35Å | 1.36Å | |
| C5A | H51 | sing | 1.09Å | 1.12Å | |
| C5A | H52 | sing | 1.09Å | 1.11Å | |
| C5A | H53 | sing | 1.09Å | 1.12Å | |
| C6 | H6 | sing | 1.08Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OP1 | P | OP2 | 119.1° | 109.5° |
| OP1 | P | OP3 | 112.5° | 109.5° |
| OP1 | P | O5' | 105.6° | 109.5° |
| OP2 | P | OP3 | 109.0° | 109.5° |
| OP2 | P | O5' | 104.0° | 109.4° |
| P | OP2 | HOP2 | 119.1° | 106.8° |
| OP3 | P | O5' | 105.2° | 109.5° |
| P | OP3 | HOP3 | 112.5° | 106.8° |
| P | O5' | C5' | 124.0° | 106.8° |
| O5' | C5' | C4' | 108.8° | 109.5° |
| O5' | C5' | H5' | 112.4° | 109.4° |
| O5' | C5' | H5'' | 112.4° | 109.4° |
| C4' | C5' | H5' | 112.5° | 109.5° |
| C4' | C5' | H5'' | 112.5° | 109.5° |
| C5' | C4' | O4' | 115.6° | 110.8° |
| C5' | C4' | C3' | 110.8° | 110.6° |
| C5' | C4' | H4' | 103.1° | 110.5° |
| H5' | C5' | H5'' | 98.0° | 109.5° |
| O4' | C4' | C3' | 105.4° | 103.6° |
| O4' | C4' | H4' | 108.7° | 110.6° |
| C4' | O4' | C1' | 106.7° | 106.8° |
| C3' | C4' | H4' | 113.6° | 110.6° |
| C4' | C3' | N3' | 109.7° | 111.0° |
| C4' | C3' | C2' | 106.6° | 102.1° |
| C4' | C3' | H3' | 110.8° | 110.9° |
| O4' | C1' | C2' | 105.7° | 107.4° |
| O4' | C1' | N1 | 109.6° | 109.9° |
| O4' | C1' | H1' | 112.2° | 109.9° |
| N3' | C3' | C2' | 108.2° | 110.9° |
| N3' | C3' | H3' | 109.3° | 110.8° |
| C3' | N3' | N4' | 132.4° | 120.1° |
| C2' | C3' | H3' | 112.1° | 110.9° |
| C3' | C2' | C1' | 101.0° | 104.2° |
| C3' | C2' | H2' | 115.4° | 110.5° |
| C3' | C2' | H2'' | 115.4° | 110.5° |
| N3' | N4' | N5' | 179.5° | 179.9° |
| C1' | C2' | H2' | 115.5° | 110.5° |
| C1' | C2' | H2'' | 115.5° | 110.5° |
| C2' | C1' | N1 | 110.6° | 109.9° |
| C2' | C1' | H1' | 111.3° | 109.9° |
| H2' | C2' | H2'' | 95.0° | 110.5° |
| N1 | C1' | H1' | 107.5° | 109.8° |
| C1' | N1 | C2 | 116.9° | 119.7° |
| C1' | N1 | C6 | 120.0° | 119.7° |
| C2 | N1 | C6 | 122.4° | 120.6° |
| N1 | C2 | O2 | 124.9° | 119.6° |
| N1 | C2 | N3 | 114.1° | 120.9° |
| N1 | C6 | C5 | 121.0° | 119.7° |
| N1 | C6 | H6 | 120.7° | 120.2° |
| O2 | C2 | N3 | 120.9° | 119.5° |
| C2 | N3 | C4 | 126.0° | 120.2° |
| C2 | N3 | HN3 | 117.4° | 119.9° |
| C4 | N3 | HN3 | 116.6° | 119.9° |
| N3 | C4 | O4 | 119.7° | 120.3° |
| N3 | C4 | C5 | 116.2° | 119.4° |
| O4 | C4 | C5 | 124.0° | 120.3° |
| C4 | C5 | C5A | 118.0° | 120.5° |
| C4 | C5 | C6 | 119.6° | 119.1° |
| C5A | C5 | C6 | 122.2° | 120.4° |
| C5 | C5A | H51 | 118.1° | 109.5° |
| C5 | C5A | H52 | 109.1° | 109.5° |
| C5 | C5A | H53 | 109.1° | 109.5° |
| C5 | C6 | H6 | 118.3° | 120.1° |
| H51 | C5A | H52 | 109.1° | 109.4° |
| H51 | C5A | H53 | 109.1° | 109.5° |
| H52 | C5A | H53 | 101.0° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP1 | P | OP2 | OP3 | 131.0° | 120.0° |
| OP1 | P | OP2 | O5' | 117.2° | 120.0° |
| OP1 | P | OP3 | O5' | 114.5° | 120.0° |
| OP1 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 180.0° | 180.0° |
| OP1 | P | O5' | C5' | 64.9° | 55.0° |
| OP2 | P | OP3 | O5' | 111.1° | 120.0° |
| OP2 | P | OP3 | HOP3 | 45.5° | 60.0° |
| OP2 | P | O5' | C5' | 168.9° | 175.0° |
| OP3 | P | OP2 | HOP2 | 49.0° | 60.0° |
| OP3 | P | O5' | C5' | 54.4° | 65.0° |
| O5' | P | OP2 | HOP2 | 62.9° | 180.0° |
| O5' | P | OP3 | HOP3 | 65.6° | 60.0° |
| P | O5' | C5' | C4' | 155.2° | 180.0° |
| P | O5' | C5' | H5' | 29.9° | 60.0° |
| P | O5' | C5' | H5'' | 79.6° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.2° | 120.0° |
| O5' | C5' | H5' | H5'' | 118.3° | 119.9° |
| O5' | C5' | C4' | O4' | 74.1° | 70.7° |
| O5' | C5' | C4' | C3' | 45.7° | 175.0° |
| O5' | C5' | C4' | H4' | 167.5° | 52.1° |
| C4' | C5' | H5' | H5'' | 118.5° | 120.1° |
| C5' | C4' | O4' | C3' | 122.6° | 118.6° |
| C5' | C4' | O4' | H4' | 115.2° | 122.9° |
| C5' | C4' | C3' | H4' | 115.4° | 122.8° |
| C5' | C4' | O4' | C1' | 146.2° | 158.5° |
| C5' | C4' | C3' | N3' | 117.1° | 86.1° |
| C5' | C4' | C3' | C2' | 125.9° | 155.7° |
| C5' | C4' | C3' | H3' | 3.6° | 37.5° |
| H5' | C5' | C4' | O4' | 160.7° | 169.3° |
| H5' | C5' | C4' | C3' | 79.5° | 55.0° |
| H5' | C5' | C4' | H4' | 42.3° | 67.8° |
| H5'' | C5' | C4' | O4' | 51.1° | 49.2° |
| H5'' | C5' | C4' | C3' | 170.9° | 65.1° |
| H5'' | C5' | C4' | H4' | 67.2° | 172.1° |
| O4' | C4' | C3' | H4' | 118.9° | 118.5° |
| O4' | C4' | C3' | N3' | 117.2° | 155.2° |
| O4' | C4' | C3' | C2' | 0.3° | 37.0° |
| O4' | C4' | C3' | H3' | 122.0° | 81.2° |
| C4' | O4' | C1' | C2' | 38.4° | 26.3° |
| C4' | O4' | C1' | N1 | 157.6° | 145.8° |
| C4' | O4' | C1' | H1' | 83.1° | 93.2° |
| C3' | C4' | O4' | C1' | 23.6° | 39.9° |
| C4' | C3' | N3' | C2' | 116.0° | 112.7° |
| C4' | C3' | N3' | H3' | 121.6° | 123.7° |
| C4' | C3' | C2' | H3' | 121.4° | 118.2° |
| C4' | C3' | N3' | N4' | 116.4° | 179.2° |
| C4' | C3' | C2' | C1' | 21.2° | 20.9° |
| C4' | C3' | C2' | H2' | 104.1° | 97.8° |
| C4' | C3' | C2' | H2'' | 146.5° | 139.5° |
| H4' | C4' | O4' | C1' | 98.5° | 78.6° |
| H4' | C4' | C3' | N3' | 1.7° | 36.7° |
| H4' | C4' | C3' | C2' | 118.6° | 81.5° |
| H4' | C4' | C3' | H3' | 119.1° | 160.3° |
| O4' | C1' | C2' | C3' | 36.3° | 2.0° |
| O4' | C1' | C2' | N1 | 118.6° | 119.5° |
| O4' | C1' | C2' | H1' | 122.0° | 119.6° |
| O4' | C1' | C2' | H2' | 89.0° | 120.7° |
| O4' | C1' | C2' | H2'' | 161.5° | 116.7° |
| O4' | C1' | N1 | H1' | 122.2° | 121.0° |
| O4' | C1' | N1 | C2 | 119.9° | 53.3° |
| O4' | C1' | N1 | C6 | 51.3° | 126.7° |
| N3' | C3' | C2' | H3' | 120.6° | 123.5° |
| C3' | N3' | N4' | N5' | 134.9° | 7.3° |
| N3' | C3' | C2' | C1' | 96.7° | 139.1° |
| N3' | C3' | C2' | H2' | 138.0° | 20.5° |
| N3' | C3' | C2' | H2'' | 28.6° | 102.2° |
| C2' | C3' | N3' | N4' | 127.6° | 66.5° |
| C3' | C2' | C1' | H2' | 125.2° | 118.7° |
| C3' | C2' | C1' | H2'' | 125.3° | 118.7° |
| C3' | C2' | H2' | H2'' | 121.3° | 122.6° |
| C3' | C2' | C1' | N1 | 154.8° | 121.5° |
| C3' | C2' | C1' | H1' | 85.8° | 117.6° |
| H3' | C3' | N3' | N4' | 5.2° | 57.2° |
| H3' | C3' | C2' | C1' | 142.6° | 97.3° |
| H3' | C3' | C2' | H2' | 17.4° | 144.0° |
| H3' | C3' | C2' | H2'' | 92.1° | 21.3° |
| C1' | C2' | H2' | H2'' | 121.3° | 122.6° |
| C2' | C1' | N1 | H1' | 121.6° | 121.0° |
| C2' | C1' | N1 | C2 | 124.0° | 64.7° |
| C2' | C1' | N1 | C6 | 64.9° | 115.3° |
| H2' | C2' | C1' | N1 | 29.6° | 119.8° |
| H2' | C2' | C1' | H1' | 149.0° | 1.1° |
| H2'' | C2' | C1' | N1 | 79.9° | 2.8° |
| H2'' | C2' | C1' | H1' | 39.5° | 123.7° |
| C1' | N1 | C2 | C6 | 170.9° | 180.0° |
| C1' | N1 | C2 | O2 | 4.8° | 0.1° |
| C1' | N1 | C2 | N3 | 173.2° | 180.0° |
| C1' | N1 | C6 | C5 | 165.9° | 179.9° |
| C1' | N1 | C6 | H6 | 14.1° | 0.0° |
| H1' | C1' | N1 | C2 | 2.3° | 174.3° |
| H1' | C1' | N1 | C6 | 173.5° | 5.7° |
| N1 | C2 | O2 | N3 | 177.9° | 179.9° |
| N1 | C2 | N3 | C4 | 8.1° | 0.2° |
| N1 | C2 | N3 | HN3 | 171.9° | 180.0° |
| C2 | N1 | C6 | C5 | 4.8° | 0.0° |
| C2 | N1 | C6 | H6 | 175.3° | 179.9° |
| C6 | N1 | C2 | O2 | 175.7° | 180.0° |
| C6 | N1 | C2 | N3 | 2.3° | 0.1° |
| N1 | C6 | C5 | C4 | 6.5° | 0.3° |
| N1 | C6 | C5 | C5A | 168.7° | 180.0° |
| N1 | C6 | C5 | H6 | 180.0° | 179.9° |
| O2 | C2 | N3 | C4 | 170.0° | 179.8° |
| O2 | C2 | N3 | HN3 | 10.0° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 179.8° |
| C2 | N3 | C4 | O4 | 170.4° | 180.0° |
| C2 | N3 | C4 | C5 | 6.5° | 0.4° |
| N3 | C4 | O4 | C5 | 176.7° | 179.6° |
| N3 | C4 | C5 | C5A | 174.2° | 179.8° |
| N3 | C4 | C5 | C6 | 1.2° | 0.5° |
| HN3 | N3 | C4 | O4 | 9.5° | 0.2° |
| HN3 | N3 | C4 | C5 | 173.5° | 179.8° |
| O4 | C4 | C5 | C5A | 2.6° | 0.3° |
| O4 | C4 | C5 | C6 | 178.0° | 179.9° |
| C4 | C5 | C5A | C6 | 175.2° | 179.7° |
| C4 | C5 | C5A | H51 | 180.0° | 90.2° |
| C4 | C5 | C5A | H52 | 54.7° | 29.7° |
| C4 | C5 | C5A | H53 | 54.7° | 149.7° |
| C4 | C5 | C6 | H6 | 173.6° | 179.8° |
| C5 | C5A | H51 | H52 | 125.3° | 120.0° |
| C5 | C5A | H51 | H53 | 125.3° | 120.0° |
| C5 | C5A | H52 | H53 | 114.9° | 120.0° |
| C5A | C5 | C6 | H6 | 11.3° | 0.1° |
| C6 | C5 | C5A | H51 | 4.8° | 90.1° |
| C6 | C5 | C5A | H52 | 130.1° | 150.0° |
| C6 | C5 | C5A | H53 | 120.5° | 30.0° |
| H51 | C5A | H52 | H53 | 114.8° | 120.0° |
