AT7
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
P | O5' | sing | 1.61Å | 1.51Å | |
N1 | C2 | doub | 1.32Å | 1.39Å | Aromatic |
N1 | C6 | sing | 1.33Å | 1.33Å | Aromatic |
C2 | N3 | sing | 1.32Å | 1.35Å | Aromatic |
C2 | H2 | sing | 1.08Å | 1.08Å | |
N3 | C4 | doub | 1.33Å | 1.39Å | Aromatic |
C4 | C5 | sing | 1.41Å | 1.37Å | Aromatic |
C4 | N9 | sing | 1.37Å | 1.33Å | Aromatic |
C5 | C6 | doub | 1.41Å | 1.42Å | Aromatic |
C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
C6 | N6 | sing | 1.38Å | 1.40Å | |
N6 | H61 | sing | 0.97Å | 1.00Å | |
N6 | H62 | sing | 0.97Å | 1.00Å | |
N7 | C8 | doub | 1.30Å | 1.31Å | Aromatic |
C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
C8 | H8 | sing | 1.08Å | 1.08Å | |
N9 | C1' | sing | 1.47Å | 1.50Å | |
C1' | C2' | sing | 1.55Å | 1.50Å | |
C1' | O4' | sing | 1.44Å | 1.43Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
C2' | C3' | sing | 1.55Å | 1.43Å | |
C2' | N3' | sing | 1.46Å | 1.47Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C3' | O3' | sing | 1.43Å | 1.45Å | |
C3' | C4' | sing | 1.54Å | 1.48Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
N3' | N4' | doub | 1.12Å | 1.20Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C4' | O4' | sing | 1.44Å | 1.36Å | |
C4' | C5' | sing | 1.53Å | 1.46Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
N4' | N5' | doub | 1.12Å | 1.14Å | |
C5' | O5' | sing | 1.43Å | 1.45Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'' | sing | 1.09Å | 1.10Å | |
N5' | HN5' | sing | 0.97Å | 1.00Å | |
P | OP1 | doub | 1.48Å | 1.53Å | |
P | OP2 | sing | 1.61Å | 1.54Å | |
P | OP3 | sing | 1.61Å | 1.72Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
P | O5' | C5' | 122.4° | 123.0° |
O5' | P | OP1 | 109.5° | 109.5° |
O5' | P | OP2 | 109.5° | 109.5° |
O5' | P | OP3 | 109.5° | 109.5° |
C2 | N1 | C6 | 119.1° | 121.2° |
N1 | C2 | N3 | 125.8° | 122.5° |
N1 | C2 | H2 | 117.1° | 118.7° |
N1 | C6 | C5 | 118.7° | 118.5° |
N1 | C6 | N6 | 121.5° | 120.8° |
N3 | C2 | H2 | 117.1° | 118.8° |
C2 | N3 | C4 | 114.4° | 120.6° |
N3 | C4 | C5 | 122.7° | 119.1° |
N3 | C4 | N9 | 128.4° | 134.9° |
C5 | C4 | N9 | 108.8° | 106.0° |
C4 | C5 | C6 | 119.3° | 118.1° |
C4 | C5 | N7 | 105.3° | 107.2° |
C4 | N9 | C8 | 108.2° | 107.4° |
C4 | N9 | C1' | 123.8° | 126.3° |
C6 | C5 | N7 | 135.5° | 134.7° |
C5 | C6 | N6 | 119.7° | 120.8° |
C5 | N7 | C8 | 109.6° | 109.4° |
C6 | N6 | H61 | 109.5° | 120.0° |
C6 | N6 | H62 | 109.5° | 120.0° |
H61 | N6 | H62 | 109.4° | 120.0° |
N7 | C8 | N9 | 108.0° | 110.0° |
N7 | C8 | H8 | 126.0° | 125.0° |
N9 | C8 | H8 | 126.0° | 125.0° |
C8 | N9 | C1' | 128.0° | 126.3° |
N9 | C1' | C2' | 115.2° | 110.6° |
N9 | C1' | O4' | 104.7° | 110.6° |
N9 | C1' | H1' | 107.3° | 110.6° |
C2' | C1' | O4' | 103.6° | 103.5° |
C2' | C1' | H1' | 108.2° | 110.6° |
C1' | C2' | C3' | 102.4° | 102.1° |
C1' | C2' | N3' | 107.0° | 110.9° |
C1' | C2' | H2' | 116.9° | 110.9° |
O4' | C1' | H1' | 118.2° | 110.8° |
C1' | O4' | C4' | 109.2° | 107.0° |
C3' | C2' | N3' | 113.4° | 110.9° |
C3' | C2' | H2' | 110.8° | 110.9° |
C2' | C3' | O3' | 113.9° | 110.5° |
C2' | C3' | C4' | 100.6° | 104.2° |
C2' | C3' | H3' | 112.5° | 110.5° |
N3' | C2' | H2' | 106.5° | 110.8° |
C2' | N3' | N4' | 124.2° | 120.0° |
O3' | C3' | C4' | 109.6° | 110.5° |
O3' | C3' | H3' | 104.0° | 110.4° |
C3' | O3' | HO3' | 109.5° | 114.1° |
C4' | C3' | H3' | 116.5° | 110.6° |
C3' | C4' | O4' | 103.9° | 107.3° |
C3' | C4' | C5' | 111.4° | 109.9° |
C3' | C4' | H4' | 112.2° | 109.9° |
N3' | N4' | N5' | 174.5° | 180.0° |
O4' | C4' | C5' | 110.4° | 109.9° |
O4' | C4' | H4' | 113.1° | 109.9° |
C5' | C4' | H4' | 105.8° | 109.9° |
C4' | C5' | O5' | 114.1° | 109.5° |
C4' | C5' | H5' | 107.9° | 109.5° |
C4' | C5' | H5'' | 108.0° | 109.5° |
N4' | N5' | HN5' | 112.0° | 120.0° |
O5' | C5' | H5' | 108.0° | 109.5° |
O5' | C5' | H5'' | 108.0° | 109.4° |
H5' | C5' | H5'' | 110.9° | 109.5° |
OP1 | P | OP2 | 109.5° | 109.5° |
OP1 | P | OP3 | 109.5° | 109.5° |
OP2 | P | OP3 | 109.5° | 109.5° |
P | OP2 | HOP2 | 109.5° | 114.0° |
P | OP3 | HOP3 | 109.5° | 114.0° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
P | O5' | C5' | C4' | 170.4° | 180.0° |
P | O5' | C5' | H5' | 50.4° | 60.0° |
P | O5' | C5' | H5'' | 69.6° | 60.0° |
O5' | P | OP1 | OP2 | 120.0° | 120.0° |
O5' | P | OP1 | OP3 | 120.0° | 120.0° |
O5' | P | OP2 | OP3 | 120.0° | 120.0° |
O5' | P | OP2 | HOP2 | 120.0° | 60.0° |
O5' | P | OP3 | HOP3 | 120.0° | 180.0° |
N1 | C2 | N3 | H2 | 180.0° | 180.0° |
N1 | C2 | N3 | C4 | 1.1° | 0.0° |
C2 | N1 | C6 | C5 | 2.6° | 0.0° |
C2 | N1 | C6 | N6 | 179.8° | 180.0° |
C6 | N1 | C2 | N3 | 2.6° | 0.0° |
C6 | N1 | C2 | H2 | 177.4° | 180.0° |
N1 | C6 | C5 | C4 | 1.4° | 0.0° |
N1 | C6 | C5 | N6 | 177.7° | 179.9° |
N1 | C6 | C5 | N7 | 177.5° | 179.9° |
N1 | C6 | N6 | H61 | 0.0° | 0.1° |
N1 | C6 | N6 | H62 | 120.0° | 180.0° |
C2 | N3 | C4 | C5 | 0.2° | 0.1° |
C2 | N3 | C4 | N9 | 177.3° | 180.0° |
H2 | C2 | N3 | C4 | 178.9° | 180.0° |
N3 | C4 | C5 | N9 | 177.6° | 180.0° |
N3 | C4 | C5 | C6 | 0.0° | 0.0° |
N3 | C4 | C5 | N7 | 179.3° | 180.0° |
N3 | C4 | N9 | C8 | 179.9° | 180.0° |
N3 | C4 | N9 | C1' | 1.1° | 0.1° |
C4 | C5 | C6 | N7 | 179.0° | 179.9° |
C4 | C5 | C6 | N6 | 179.1° | 180.0° |
C4 | C5 | N7 | C8 | 2.7° | 0.1° |
C5 | C4 | N9 | C8 | 2.5° | 0.0° |
C5 | C4 | N9 | C1' | 178.5° | 180.0° |
N9 | C4 | C5 | C6 | 177.6° | 180.0° |
N9 | C4 | C5 | N7 | 3.2° | 0.1° |
C4 | N9 | C8 | N7 | 0.8° | 0.0° |
C4 | N9 | C8 | C1' | 178.9° | 180.0° |
C4 | N9 | C8 | H8 | 179.1° | 179.9° |
C4 | N9 | C1' | C2' | 83.8° | 85.0° |
C4 | N9 | C1' | O4' | 163.1° | 160.9° |
C4 | N9 | C1' | H1' | 36.7° | 37.8° |
C5 | C6 | N6 | H61 | 177.6° | 180.0° |
C5 | C6 | N6 | H62 | 62.4° | 0.0° |
C6 | C5 | N7 | C8 | 178.3° | 180.0° |
N7 | C5 | C6 | N6 | 0.1° | 0.0° |
C5 | N7 | C8 | N9 | 1.2° | 0.1° |
C5 | N7 | C8 | H8 | 178.9° | 180.0° |
C6 | N6 | H61 | H62 | 120.0° | 179.9° |
N7 | C8 | N9 | H8 | 180.0° | 179.9° |
N7 | C8 | N9 | C1' | 179.7° | 179.9° |
C8 | N9 | C1' | C2' | 94.8° | 95.0° |
C8 | N9 | C1' | O4' | 18.2° | 19.1° |
C8 | N9 | C1' | H1' | 144.6° | 142.1° |
H8 | C8 | N9 | C1' | 0.3° | 0.0° |
N9 | C1' | C2' | O4' | 113.7° | 118.5° |
N9 | C1' | C2' | H1' | 120.0° | 122.8° |
N9 | C1' | O4' | H1' | 119.3° | 122.9° |
N9 | C1' | C2' | C3' | 86.1° | 155.5° |
N9 | C1' | C2' | N3' | 154.3° | 86.3° |
N9 | C1' | C2' | H2' | 35.1° | 37.3° |
N9 | C1' | O4' | C4' | 120.7° | 158.5° |
C2' | C1' | O4' | H1' | 119.7° | 118.6° |
C1' | C2' | C3' | N3' | 114.9° | 118.2° |
C1' | C2' | C3' | H2' | 125.3° | 118.2° |
C1' | C2' | N3' | H2' | 125.7° | 123.6° |
C1' | C2' | C3' | O3' | 159.3° | 97.8° |
C1' | C2' | C3' | C4' | 42.2° | 20.8° |
C1' | C2' | C3' | H3' | 82.6° | 139.7° |
C1' | C2' | N3' | N4' | 165.7° | 175.0° |
C2' | C1' | O4' | C4' | 0.4° | 40.0° |
O4' | C1' | C2' | C3' | 27.5° | 37.0° |
O4' | C1' | C2' | N3' | 92.0° | 155.2° |
O4' | C1' | C2' | H2' | 148.8° | 81.2° |
C1' | O4' | C4' | C3' | 26.1° | 26.5° |
C1' | O4' | C4' | C5' | 145.7° | 146.0° |
C1' | O4' | C4' | H4' | 95.9° | 93.0° |
H1' | C1' | C2' | C3' | 153.8° | 81.7° |
H1' | C1' | C2' | N3' | 34.3° | 36.6° |
H1' | C1' | C2' | H2' | 84.9° | 160.1° |
H1' | C1' | O4' | C4' | 120.0° | 78.5° |
C3' | C2' | N3' | H2' | 122.2° | 123.7° |
C2' | C3' | O3' | C4' | 111.8° | 114.8° |
C2' | C3' | O3' | H3' | 122.9° | 122.6° |
C2' | C3' | C4' | H3' | 122.0° | 118.8° |
C3' | C2' | N3' | N4' | 82.2° | 72.3° |
C2' | C3' | O3' | HO3' | 180.0° | 179.9° |
C2' | C3' | C4' | O4' | 43.1° | 2.0° |
C2' | C3' | C4' | C5' | 162.1° | 121.5° |
C2' | C3' | C4' | H4' | 79.4° | 117.4° |
N3' | C2' | C3' | O3' | 44.4° | 20.4° |
N3' | C2' | C3' | C4' | 72.7° | 139.1° |
N3' | C2' | C3' | H3' | 162.5° | 102.1° |
C2' | N3' | N4' | N5' | 109.5° | 43.6° |
H2' | C2' | C3' | O3' | 75.3° | 144.0° |
H2' | C2' | C3' | C4' | 167.5° | 97.3° |
H2' | C2' | C3' | H3' | 42.7° | 21.5° |
H2' | C2' | N3' | N4' | 40.0° | 51.4° |
O3' | C3' | C4' | H3' | 117.7° | 122.6° |
O3' | C3' | C4' | O4' | 163.4° | 120.7° |
O3' | C3' | C4' | C5' | 77.7° | 119.8° |
O3' | C3' | C4' | H4' | 40.8° | 1.3° |
C4' | C3' | O3' | HO3' | 68.2° | 65.2° |
C3' | C4' | O4' | C5' | 119.6° | 119.4° |
C3' | C4' | O4' | H4' | 121.9° | 119.5° |
C3' | C4' | C5' | H4' | 122.2° | 121.1° |
C3' | C4' | C5' | O5' | 57.9° | 175.0° |
C3' | C4' | C5' | H5' | 177.9° | 55.0° |
C3' | C4' | C5' | H5'' | 62.1° | 65.0° |
H3' | C3' | O3' | HO3' | 57.1° | 57.5° |
H3' | C3' | C4' | O4' | 78.9° | 116.7° |
H3' | C3' | C4' | C5' | 40.1° | 2.7° |
H3' | C3' | C4' | H4' | 158.6° | 123.8° |
N3' | N4' | N5' | HN5' | 0.0° | 46.5° |
O4' | C4' | C5' | H4' | 122.8° | 121.0° |
O4' | C4' | C5' | O5' | 57.1° | 67.1° |
O4' | C4' | C5' | H5' | 63.0° | 172.9° |
O4' | C4' | C5' | H5'' | 177.1° | 52.8° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
C4' | C5' | H5' | H5'' | 118.1° | 120.0° |
H4' | C4' | C5' | O5' | 179.8° | 53.9° |
H4' | C4' | C5' | H5' | 59.8° | 66.1° |
H4' | C4' | C5' | H5'' | 60.1° | 173.9° |
O5' | C5' | H5' | H5'' | 118.1° | 120.0° |
C5' | O5' | P | OP1 | 128.3° | 54.9° |
C5' | O5' | P | OP2 | 8.3° | 65.1° |
C5' | O5' | P | OP3 | 111.7° | 174.9° |
OP1 | P | OP2 | OP3 | 120.0° | 120.0° |
OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
OP1 | P | OP3 | HOP3 | 0.0° | 60.0° |
OP2 | P | OP3 | HOP3 | 120.0° | 60.0° |
OP3 | P | OP2 | HOP2 | 120.0° | 60.0° |