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AR6

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.35ÅAromatic
N1C6sing1.33Å1.36ÅAromatic
C2N3sing1.32Å1.34ÅAromatic
N3C4doub1.33Å1.35ÅAromatic
C4C5sing1.40Å1.46ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
C5C6doub1.41Å1.48ÅAromatic
C5N7sing1.36Å1.35ÅAromatic
C6N6sing1.38Å1.35Å
N7C8doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.48Å
PAO1Asing1.61Å1.51Å
PAO2Adoub1.48Å1.50Å
PAO3Asing1.61Å1.58Å
PAO5'sing1.61Å1.58Å
PBO1Bsing1.61Å1.50Å
PBO2Bdoub1.48Å1.50Å
PBO3Asing1.61Å1.58Å
PBO5Dsing1.61Å1.59Å
C1'C2'sing1.55Å1.51Å
C1'O4'sing1.44Å1.43Å
C1DO1Dsing1.43Å1.43Å
C1DC2Dsing1.54Å1.52Å
C1DO4Dsing1.44Å1.42Å
C2'O2'sing1.43Å1.44Å
C2'C3'sing1.55Å1.52Å
C2DO2Dsing1.43Å1.43Å
C2DC3Dsing1.55Å1.52Å
C3'O3'sing1.43Å1.43Å
C3'C4'sing1.54Å1.52Å
C3DO3Dsing1.43Å1.42Å
C3DC4Dsing1.55Å1.52Å
C4'O4'sing1.44Å1.43Å
C4'C5'sing1.53Å1.52Å
C4DO4Dsing1.44Å1.43Å
C4DC5Dsing1.53Å1.50Å
C5'O5'sing1.43Å1.42Å
C5DO5Dsing1.43Å1.42Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
C1DH1Dsing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C2DH2Dsing1.09Å1.10Å
O2DHO2Dsing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C3DH3Dsing1.09Å1.10Å
O3DHO3Dsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C4DH4Dsing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5DH5Dsing1.09Å1.10Å
C5DH5DAsing1.09Å1.10Å
O1AH1Asing0.97Å0.95Å
O1BH1Bsing0.97Å0.95Å
O1DHD1sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6122.3°121.2°
N1C2N3122.2°122.4°
N1C2H2118.9°118.8°
N1C6C5118.5°118.5°
N1C6N6120.3°120.8°
C2N3C4121.4°120.7°
N3C2H2118.9°118.8°
N3C4C5119.9°119.0°
N3C4N9134.2°134.9°
C5C4N9106.0°106.0°
C4C5C6115.8°118.2°
C4C5N7106.7°107.1°
C4N9C8109.7°107.5°
C4N9C1'122.9°126.3°
C6C5N7137.5°134.7°
C5C6N6121.2°120.7°
C5N7C8107.4°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
N7C8N9110.2°110.0°
N7C8H8124.9°125.0°
C8N9C1'127.4°126.2°
N9C8H8124.9°125.1°
N9C1'C2'112.3°110.7°
N9C1'O4'110.2°110.6°
N9C1'H1'109.2°110.5°
O1APAO2A124.3°109.5°
O1APAO3A109.4°109.5°
O1APAO5'109.9°109.4°
PAO1AH1A109.5°114.0°
O2APAO3A103.8°109.5°
O2APAO5'108.2°109.5°
O3APAO5'97.9°109.5°
PAO3APB126.6°134.0°
PAO5'C5'118.0°123.0°
O1BPBO2B122.4°109.5°
O1BPBO3A100.4°109.4°
O1BPBO5D108.0°109.5°
PBO1BH1B109.5°114.0°
O2BPBO3A112.9°109.4°
O2BPBO5D109.2°109.5°
O3APBO5D101.7°109.4°
PBO5DC5D119.2°122.9°
C2'C1'O4'106.6°103.5°
C1'C2'O2'110.7°110.9°
C1'C2'C3'101.8°102.1°
C2'C1'H1'108.7°110.6°
C1'C2'H2'109.5°110.9°
C1'O4'C4'109.5°107.0°
O4'C1'H1'109.9°110.7°
O1DC1DC2D110.0°109.9°
O1DC1DO4D108.2°109.9°
O1DC1DH1D111.4°109.8°
C1DO1DHD1109.5°114.1°
C2DC1DO4D105.4°107.3°
C1DC2DO2D112.2°110.5°
C1DC2DC3D104.4°104.2°
C2DC1DH1D110.2°109.9°
C1DC2DH2D109.2°110.5°
C1DO4DC4D106.4°107.0°
O4DC1DH1D111.5°110.0°
O2'C2'C3'114.5°110.9°
O2'C2'H2'110.6°110.8°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'111.6°110.5°
C2'C3'C4'103.3°104.2°
C3'C2'H2'109.4°111.0°
C2'C3'H3'110.5°110.4°
O2DC2DC3D111.3°110.5°
O2DC2DH2D110.4°110.5°
C2DO2DHO2D109.5°113.9°
C2DC3DO3D113.7°110.9°
C2DC3DC4D104.4°102.1°
C3DC2DH2D109.2°110.6°
C2DC3DH3D109.9°110.9°
O3'C3'C4'108.8°110.5°
O3'C3'H3'111.9°110.5°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'106.9°107.3°
C3'C4'C5'114.1°109.9°
C4'C3'H3'110.5°110.6°
C3'C4'H4'109.5°109.9°
O3DC3DC4D107.4°110.9°
O3DC3DH3D111.4°110.7°
C3DO3DHO3D109.5°114.0°
C3DC4DO4D107.4°103.5°
C3DC4DC5D110.2°110.6°
C4DC3DH3D109.9°111.0°
C3DC4DH4D109.0°110.6°
O4'C4'C5'105.8°109.9°
O4'C4'H4'110.9°109.9°
C4'C5'O5'111.8°109.5°
C5'C4'H4'109.6°110.0°
C4'C5'H5'108.9°109.5°
C4'C5'H5'A108.9°109.5°
O4DC4DC5D110.8°110.6°
O4DC4DH4D110.2°110.6°
C4DC5DO5D107.7°109.5°
C5DC4DH4D109.2°110.7°
C4DC5DH5D109.9°109.5°
C4DC5DH5DA109.9°109.4°
O5'C5'H5'108.9°109.5°
O5'C5'H5'A108.9°109.5°
O5DC5DH5D109.9°109.5°
O5DC5DH5DA109.9°109.5°
HN6N6HN6A109.4°120.0°
H5'C5'H5'A109.5°109.5°
H5DC5DH5DA109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°180.0°
N1C2N3C40.4°0.1°
C2N1C6C50.1°0.1°
C2N1C6N6179.4°180.0°
C6N1C2N30.3°0.1°
N1C6C5C40.0°0.1°
N1C6C5N6179.5°179.9°
N1C6C5N7179.2°180.0°
C6N1C2H2179.7°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°179.9°
C2N3C4C50.3°0.0°
C2N3C4N9179.6°180.0°
N3C4C5N9179.5°180.0°
N3C4C5C60.1°0.0°
N3C4C5N7179.5°180.0°
N3C4N9C8179.7°180.0°
N3C4N9C1'1.3°0.0°
C4N3C2H2179.6°180.0°
C4C5C6N7179.2°179.9°
C4C5C6N6179.5°180.0°
C4C5N7C80.6°0.0°
C5C4N9C81.0°0.0°
C5C4N9C1'179.4°180.0°
N9C4C5C6179.6°180.0°
N9C4C5N71.0°0.0°
C4N9C8N70.6°0.0°
C4N9C8C1'178.3°180.0°
C4N9C1'C2'111.0°85.0°
C4N9C1'O4'130.4°160.9°
C4N9C8H8179.4°180.0°
C4N9C1'H1'9.7°37.9°
C6C5N7C8179.9°180.0°
C5C6N6HN6179.5°179.9°
C5C6N6HN6A59.5°0.0°
N7C5C6N60.3°0.1°
C5N7C8N90.1°0.1°
C5N7C8H8179.9°180.0°
C6N6HN6HN6A120.0°179.9°
N7C8N9H8180.0°179.9°
N7C8N9C1'178.9°180.0°
C8N9C1'C2'70.9°95.0°
C8N9C1'O4'47.7°19.1°
C8N9C1'H1'168.4°142.1°
N9C1'C2'O4'120.7°118.5°
N9C1'C2'H1'120.9°122.9°
N9C1'O4'H1'120.3°122.9°
N9C1'C2'O2'84.8°86.3°
N9C1'C2'C3'153.1°155.6°
N9C1'O4'C4'140.8°158.6°
C1'N9C8H81.1°0.0°
N9C1'C2'H2'37.4°37.3°
O1APAO2AO3A125.5°120.1°
O1APAO2AO5'131.1°120.0°
O1APAO3AO5'114.4°120.0°
O1APAO3APB51.4°80.0°
O1APAO5'C5'126.6°65.0°
O2APAO3AO5'111.0°120.0°
O2APAO3APB83.2°40.1°
O2APAO5'C5'94.8°55.0°
O2APAO1AH1A0.0°180.0°
PAO3APBO1B158.3°80.0°
PAO3APBO2B26.3°40.0°
PAO3APBO5D90.6°160.0°
O3APAO5'C5'12.6°175.0°
O3APAO1AH1A123.1°59.9°
O5'PAO3APB165.8°160.0°
PAO5'C5'C4'165.7°180.0°
PAO5'C5'H5'73.9°60.0°
PAO5'C5'H5'A45.4°60.0°
O5'PAO1AH1A130.4°60.0°
O1BPBO2BO3A120.1°120.0°
O1BPBO2BO5D127.6°120.1°
O1BPBO3AO5D111.1°120.0°
O1BPBO5DC5D80.4°65.0°
O2BPBO3AO5D116.9°120.0°
O2BPBO5DC5D144.3°55.0°
O2BPBO1BH1B0.0°180.0°
O3APBO5DC5D24.7°175.0°
O3APBO1BH1B125.9°60.0°
PBO5DC5DC4D173.0°180.0°
PBO5DC5DH5D53.3°60.0°
PBO5DC5DH5DA67.3°60.0°
O5DPBO1BH1B128.1°60.0°
C2'C1'O4'H1'117.7°118.6°
C1'C2'O2'C3'114.3°112.7°
C1'C2'O2'H2'121.5°123.6°
C1'C2'C3'H2'115.8°118.2°
C1'C2'C3'O3'83.7°97.8°
C1'C2'C3'C4'33.0°20.9°
C2'C1'O4'C4'18.8°40.1°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'H3'151.2°139.7°
O4'C1'C2'O2'154.5°155.2°
O4'C1'C2'C3'32.4°37.0°
C1'O4'C4'C3'3.0°26.5°
C1'O4'C4'C5'118.9°145.9°
O4'C1'C2'H2'83.3°81.2°
C1'O4'C4'H4'122.3°92.9°
O1DC1DC2DO4D116.4°119.4°
O1DC1DC2DH1D123.2°121.0°
O1DC1DO4DH1D122.9°121.0°
O1DC1DC2DO2D32.1°1.3°
O1DC1DC2DC3D88.5°117.4°
O1DC1DO4DC4D81.6°93.0°
O1DC1DC2DH2D154.8°123.8°
C2DC1DO4DH1D119.5°119.5°
C1DC2DO2DC3D116.6°114.7°
C1DC2DO2DH2D122.0°122.6°
C1DC2DC3DH2D116.7°118.7°
C1DC2DC3DO3D106.9°139.1°
C1DC2DC3DC4D9.7°20.9°
C2DC1DO4DC4D36.0°26.5°
C1DC2DO2DHO2D180.0°61.4°
C1DC2DC3DH3D127.5°97.4°
C2DC1DO1DHD1180.0°180.0°
O4DC1DC2DO2D148.5°120.7°
O4DC1DC2DC3D27.8°2.0°
C1DO4DC4DC3D29.8°40.1°
C1DO4DC4DC5D150.2°158.6°
O4DC1DC2DH2D88.8°116.8°
C1DO4DC4DH4D88.9°78.4°
O4DC1DO1DHD165.4°62.1°
O2'C2'C3'H2'124.7°123.6°
O2'C2'C3'O3'35.8°20.4°
O2'C2'C3'C4'152.5°139.1°
O2'C2'C1'H1'36.1°36.6°
O2'C2'C3'H3'89.3°102.1°
C2'C3'O3'C4'113.3°114.8°
C2'C3'O3'H3'124.4°122.5°
C2'C3'C4'H3'118.2°118.7°
C2'C3'C4'O4'23.2°2.0°
C2'C3'C4'C5'93.4°121.4°
C3'C2'C1'H1'86.0°81.6°
C3'C2'O2'HO2'65.7°67.4°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'H4'143.4°117.4°
O2DC2DC3DH2D122.1°122.6°
O2DC2DC3DO3D14.3°20.5°
O2DC2DC3DC4D131.0°97.8°
O2DC2DC1DH1D91.1°119.7°
O2DC2DC3DH3D111.3°143.9°
C2DC3DO3DC4D114.9°112.7°
C2DC3DO3DH3D124.7°123.5°
C2DC3DC4DH3D117.8°118.2°
C2DC3DC4DO4D11.4°37.0°
C2DC3DC4DC5D132.2°155.5°
C3DC2DC1DH1D148.3°121.6°
C3DC2DO2DHO2D63.4°176.2°
C2DC3DO3DHO3D180.0°61.4°
C2DC3DC4DH4D108.0°81.5°
O3'C3'C4'H3'123.2°122.6°
O3'C3'C4'O4'95.4°120.7°
O3'C3'C4'C5'148.0°119.9°
O3'C3'C2'H2'160.6°144.0°
O3'C3'C4'H4'24.8°1.3°
C3'C4'O4'C5'121.9°119.4°
C3'C4'O4'H4'119.3°119.4°
C3'C4'C5'H4'123.2°121.1°
C3'C4'C5'O5'28.3°175.0°
C4'C3'C2'H2'82.7°97.3°
C4'C3'O3'HO3'66.7°176.2°
C3'C4'C5'H5'92.1°55.0°
C3'C4'C5'H5'A148.6°65.0°
O3DC3DC4DH3D121.3°123.6°
O3DC3DC4DO4D132.4°155.2°
O3DC3DC4DC5D106.9°86.2°
O3DC3DC2DH2D136.4°102.2°
O3DC3DC4DH4D13.0°36.7°
C3DC4DO4DC5D120.4°118.5°
C3DC4DO4DH4D118.7°118.5°
C3DC4DC5DH4D119.7°123.0°
C3DC4DC5DO5D43.9°175.0°
C4DC3DC2DH2D106.9°139.6°
C4DC3DO3DHO3D65.1°174.2°
C3DC4DC5DH5D163.6°55.0°
C3DC4DC5DH5DA75.9°65.0°
O4'C4'C5'H4'119.6°121.1°
O4'C4'C5'O5'145.5°67.2°
C4'O4'C1'H1'98.9°78.5°
O4'C4'C3'H3'141.4°116.7°
O4'C4'C5'H5'25.2°172.8°
O4'C4'C5'H5'A94.1°52.8°
C4'C5'O5'H5'120.3°120.0°
C4'C5'O5'H5'A120.4°120.0°
C5'C4'C3'H3'24.8°2.7°
C4'C5'H5'H5'A118.9°120.0°
O4DC4DC5DH4D121.6°123.0°
O4DC4DC5DO5D74.8°70.9°
C4DO4DC1DH1D155.5°146.1°
O4DC4DC3DH3D106.3°81.2°
O4DC4DC5DH5D44.9°169.0°
O4DC4DC5DH5DA165.5°49.1°
C4DC5DO5DH5D119.7°120.0°
C4DC5DO5DH5DA119.7°119.9°
C5DC4DC3DH3D14.4°37.3°
C4DC5DH5DH5DA120.8°120.0°
O5'C5'C4'H4'94.9°53.9°
O5'C5'H5'H5'A118.9°120.0°
O5DC5DC4DH4D163.6°52.0°
O5DC5DH5DH5DA120.8°120.0°
H1'C1'C2'H2'158.3°160.1°
H1DC1DC2DH2D31.6°2.8°
H1DC1DO1DHD157.6°59.0°
H2'C2'O2'HO2'58.5°56.3°
H2'C2'C3'H3'35.4°21.5°
H2DC2DO2DHO2D58.0°61.1°
H2DC2DC3DH3D10.8°21.3°
H3'C3'O3'HO3'55.6°61.1°
H3'C3'C4'H4'98.4°124.0°
H3DC3DO3DHO3D55.3°62.1°
H3DC3DC4DH4D134.2°160.3°
H4'C4'C5'H5'144.7°66.1°
H4'C4'C5'H5'A25.4°173.9°
H4DC4DC5DH5D76.7°68.0°
H4DC4DC5DH5DA43.9°172.0°

246704

PDB entries from 2025-12-24

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