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APR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2sing1.32Å1.41ÅAromatic
N1C6doub1.33Å1.42ÅAromatic
C2N3doub1.32Å1.33ÅAromatic
C2H2sing1.08Å1.10Å
N3C4sing1.33Å1.42ÅAromatic
C4C5doub1.41Å1.41ÅAromatic
C4N9sing1.37Å1.38ÅAromatic
C5C6sing1.41Å1.48ÅAromatic
C5N7sing1.35Å1.39ÅAromatic
C6N6sing1.38Å1.34Å
N6H61sing0.97Å1.02Å
N6H62sing0.97Å1.02Å
N7C8doub1.30Å1.34ÅAromatic
C8N9sing1.36Å1.37ÅAromatic
C8H8sing1.08Å1.10Å
N9C1'sing1.46Å1.62Å
C1'C2'sing1.54Å1.55Å
C1'O4'sing1.44Å1.38Å
C1'H'1sing1.09Å1.12Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.57Å
C2'H'2sing1.09Å1.12Å
O2'HO'2sing0.97Å0.95Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.47Å
C3'H'3sing1.09Å1.12Å
O3'HO'3sing0.97Å0.95Å
O4'C4'sing1.44Å1.50Å
C4'C5'sing1.53Å1.48Å
C4'H'4sing1.09Å1.11Å
C5'O5'sing1.43Å1.43Å
C5'H5'1sing1.09Å1.11Å
C5'H5'2sing1.09Å1.11Å
O5'PAsing1.61Å1.55Å
PAO1Adoub1.48Å1.38Å
PAO2Asing1.61Å1.38Å
PAO3Asing1.61Å1.70Å
O2AHOA2sing0.97Å0.95Å
O3APBsing1.61Å1.61Å
PBO1Bdoub1.48Å1.49Å
PBO2Bsing1.61Å1.48Å
PBO5Dsing1.61Å1.69Å
O2BHOB2sing0.97Å0.95Å
O5DC5Dsing1.43Å1.51Å
C5DC4Dsing1.53Å1.56Å
C5DH5R1sing1.09Å1.11Å
C5DH5R2sing1.09Å1.12Å
O4DC1Dsing1.44Å1.44Å
O4DC4Dsing1.44Å1.59Å
O1DC1Dsing1.43Å1.40Å
O1DHOR1sing0.97Å0.95Å
C1DC2Dsing1.55Å1.55Å
C1DHR'1sing1.09Å1.11Å
O2DC2Dsing1.43Å1.44Å
O2DHOR2sing0.97Å0.95Å
C2DC3Dsing1.55Å1.54Å
C2DHR'2sing1.09Å1.12Å
O3DC3Dsing1.43Å1.51Å
O3DHOR3sing0.97Å0.95Å
C3DC4Dsing1.54Å1.49Å
C3DHR'3sing1.09Å1.12Å
C4DHR'4sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6119.2°121.2°
N1C2N3127.1°122.4°
N1C2H2119.6°118.8°
N1C6C5117.8°118.5°
N1C6N6117.8°120.8°
N3C2H2113.3°118.8°
C2N3C4113.1°120.7°
N3C4C5127.3°119.1°
N3C4N9127.1°135.0°
C5C4N9105.3°106.0°
C4C5C6115.4°118.2°
C4C5N7110.1°107.1°
C4N9C8106.9°107.4°
C4N9C1'120.9°126.3°
C6C5N7134.5°134.7°
C5C6N6124.3°120.7°
C5N7C8104.6°109.5°
C6N6H61117.8°119.9°
C6N6H62109.2°120.0°
H61N6H62109.2°120.1°
N7C8N9112.6°110.0°
N7C8H8122.8°125.0°
N9C8H8124.6°125.0°
C8N9C1'131.8°126.3°
N9C1'C2'109.5°110.3°
N9C1'O4'110.1°110.4°
N9C1'H'1107.6°110.3°
C2'C1'O4'104.9°104.9°
C2'C1'H'1112.6°110.3°
C1'C2'O2'108.8°110.8°
C1'C2'C3'106.0°104.0°
C1'C2'H'2112.1°110.4°
O4'C1'H'1112.0°110.4°
C1'O4'C4'115.8°105.3°
O2'C2'C3'109.4°110.5°
O2'C2'H'2108.9°110.4°
C2'O2'HO'2108.8°106.9°
C3'C2'H'2111.5°110.5°
C2'C3'O3'111.0°110.6°
C2'C3'C4'106.8°104.1°
C2'C3'H'3110.6°110.6°
O3'C3'C4'110.5°110.6°
O3'C3'H'3106.9°110.4°
C3'O3'HO'3111.0°106.8°
C4'C3'H'3111.1°110.5°
C3'C4'O4'105.0°104.8°
C3'C4'C5'107.8°110.5°
C3'C4'H'4113.4°110.3°
O4'C4'C5'109.4°110.4°
O4'C4'H'4111.8°110.4°
C5'C4'H'4109.2°110.3°
C4'C5'O5'109.0°109.5°
C4'C5'H5'1112.4°109.5°
C4'C5'H5'2112.4°109.5°
O5'C5'H5'1112.3°109.5°
O5'C5'H5'2112.3°109.4°
C5'O5'PA121.1°106.8°
H5'1C5'H5'298.1°109.4°
O5'PAO1A108.6°109.5°
O5'PAO2A107.1°109.5°
O5'PAO3A112.4°109.5°
O1APAO2A110.8°109.5°
O1APAO3A110.0°109.4°
O2APAO3A108.0°109.5°
PAO2AHOA2107.1°106.9°
PAO3APB132.3°106.8°
O3APBO1B109.8°109.4°
O3APBO2B110.5°109.5°
O3APBO5D107.8°109.5°
O1BPBO2B109.8°109.4°
O1BPBO5D107.2°109.5°
O2BPBO5D111.7°109.5°
PBO2BHOB2110.4°106.8°
PBO5DC5D112.6°106.9°
O5DC5DC4D118.3°109.5°
O5DC5DH5R1109.0°109.5°
O5DC5DH5R2109.1°109.4°
C4DC5DH5R1109.0°109.5°
C4DC5DH5R2109.0°109.4°
C5DC4DO4D110.8°109.9°
C5DC4DC3D107.5°109.9°
C5DC4DHR'4109.0°109.9°
H5R1C5DH5R2101.0°109.4°
C1DO4DC4D107.9°107.0°
O4DC1DO1D108.8°110.6°
O4DC1DC2D106.8°103.4°
O4DC1DHR'1111.7°110.6°
O4DC4DC3D106.6°107.4°
O4DC4DHR'4109.9°109.9°
C1DO1DHOR1108.8°106.8°
O1DC1DC2D109.6°110.8°
O1DC1DHR'1109.0°110.6°
C2DC1DHR'1110.8°110.6°
C1DC2DO2D110.2°110.9°
C1DC2DC3D105.9°102.1°
C1DC2DHR'2111.7°110.9°
C2DO2DHOR2110.2°106.8°
O2DC2DC3D110.3°110.9°
O2DC2DHR'2107.3°110.8°
C3DC2DHR'2111.5°111.0°
C2DC3DO3D109.8°110.5°
C2DC3DC4D105.1°104.1°
C2DC3DHR'3112.0°110.5°
C3DO3DHOR3109.8°106.8°
O3DC3DC4D109.3°110.8°
O3DC3DHR'3108.1°110.4°
C4DC3DHR'3112.6°110.4°
C3DC4DHR'4113.0°109.9°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°179.9°
N1C2N3C41.1°0.0°
C2N1C6C53.7°0.3°
C2N1C6N6171.4°180.0°
C6N1C2N30.6°0.1°
C6N1C2H2179.4°180.0°
N1C6C5C44.8°0.5°
N1C6C5N6174.7°179.7°
N1C6C5N7178.0°179.6°
N1C6N6H61180.0°0.1°
N1C6N6H6254.8°179.8°
C2N3C4C50.4°0.2°
C2N3C4N9171.9°180.0°
H2C2N3C4178.8°179.9°
N3C4C5N9173.7°179.9°
N3C4C5C63.4°0.5°
N3C4C5N7178.8°179.8°
N3C4N9C8178.8°179.9°
N3C4N9C1'8.1°0.0°
C4C5C6N7177.2°179.1°
C4C5C6N6169.9°179.8°
C4C5N7C84.4°0.4°
C5C4N9C87.6°0.2°
C5C4N9C1'165.5°179.9°
N9C4C5C6170.3°179.7°
N9C4C5N77.6°0.4°
C4N9C8N75.3°0.0°
C4N9C8C1'172.1°179.9°
C4N9C8H8174.7°179.9°
C4N9C1'C2'112.1°91.6°
C4N9C1'O4'133.0°152.9°
C4N9C1'H'110.7°30.6°
C5C6N6H615.3°179.8°
C5C6N6H62130.5°0.6°
C6C5N7C8172.9°179.5°
N7C5C6N67.3°0.7°
C5N7C8N90.5°0.2°
C5N7C8H8179.4°179.8°
C6N6H61H62125.2°179.7°
N7C8N9H8179.9°180.0°
N7C8N9C1'166.8°179.9°
C8N9C1'C2'59.1°88.6°
C8N9C1'O4'55.8°27.0°
C8N9C1'H'1178.2°149.2°
H8C8N9C1'13.3°0.0°
N9C1'C2'O4'118.2°118.9°
N9C1'C2'H'1119.7°122.2°
N9C1'O4'H'1119.7°122.3°
N9C1'C2'O2'134.6°98.5°
N9C1'C2'C3'107.8°142.7°
N9C1'C2'H'214.1°24.2°
N9C1'O4'C4'112.7°159.3°
C2'C1'O4'H'1122.5°118.9°
C1'C2'O2'C3'115.4°114.7°
C1'C2'O2'H'2122.5°122.7°
C1'C2'C3'H'2122.3°118.5°
C1'C2'O2'HO'2180.0°176.1°
C1'C2'C3'O3'132.9°118.9°
C1'C2'C3'C4'12.4°0.1°
C1'C2'C3'H'3108.6°118.5°
C2'C1'O4'C4'5.1°40.4°
O4'C1'C2'O2'107.2°142.6°
O4'C1'C2'C3'10.4°23.8°
O4'C1'C2'H'2132.4°94.7°
C1'O4'C4'C3'2.8°40.5°
C1'O4'C4'C5'118.3°159.5°
C1'O4'C4'H'4120.6°78.3°
H'1C1'C2'O2'14.9°23.7°
H'1C1'C2'C3'132.5°95.1°
H'1C1'C2'H'2105.6°146.4°
H'1C1'O4'C4'127.6°78.4°
O2'C2'C3'H'2120.5°122.6°
O2'C2'C3'O3'15.7°0.1°
O2'C2'C3'C4'104.8°118.8°
O2'C2'C3'H'3134.3°122.5°
C3'C2'O2'HO'264.6°61.4°
C2'C3'O3'C4'118.3°114.7°
C2'C3'O3'H'3120.7°122.7°
C2'C3'C4'H'3120.7°118.7°
C2'C3'O3'HO'3180.0°65.3°
C2'C3'C4'O4'9.3°24.1°
C2'C3'C4'C5'125.9°143.0°
C2'C3'C4'H'4113.1°94.8°
H'2C2'O2'HO'257.6°61.2°
H'2C2'C3'O3'104.8°122.7°
H'2C2'C3'C4'134.7°118.6°
H'2C2'C3'H'313.7°0.0°
O3'C3'C4'H'3118.5°122.6°
O3'C3'C4'O4'130.1°142.8°
O3'C3'C4'C5'113.3°98.3°
O3'C3'C4'H'47.7°23.9°
C4'C3'O3'HO'361.7°180.0°
C3'C4'O4'C5'115.5°119.0°
C3'C4'O4'H'4123.4°118.8°
C3'C4'C5'H'4123.6°122.3°
C3'C4'C5'O5'132.9°176.9°
C3'C4'C5'H5'1101.8°63.0°
C3'C4'C5'H5'27.7°56.9°
H'3C3'O3'HO'359.3°57.5°
H'3C3'C4'O4'111.4°94.6°
H'3C3'C4'C5'5.2°24.3°
H'3C3'C4'H'4126.2°146.5°
O4'C4'C5'H'4122.7°122.3°
O4'C4'C5'O5'19.3°61.4°
O4'C4'C5'H5'1144.5°178.5°
O4'C4'C5'H5'2105.9°58.5°
C4'C5'O5'H5'1125.2°120.1°
C4'C5'O5'H5'2125.2°120.0°
C4'C5'H5'1H5'2118.3°120.0°
C4'C5'O5'PA178.4°180.0°
H'4C4'C5'O5'103.4°60.8°
H'4C4'C5'H5'121.8°59.2°
H'4C4'C5'H5'2131.4°179.2°
O5'C5'H5'1H5'2118.3°119.9°
C5'O5'PAO1A100.1°60.0°
C5'O5'PAO2A140.2°60.0°
C5'O5'PAO3A21.8°180.0°
H5'1C5'O5'PA53.2°59.9°
H5'2C5'O5'PA56.3°60.0°
O5'PAO1AO2A117.3°120.0°
O5'PAO1AO3A123.3°120.0°
O5'PAO2AO3A121.2°120.0°
O5'PAO2AHOA2180.0°60.0°
O5'PAO3APB67.9°180.0°
O1APAO2AO3A120.5°120.0°
O1APAO2AHOA261.7°180.0°
O1APAO3APB171.1°60.0°
O2APAO3APB50.0°60.0°
O3APAO2AHOA258.8°60.0°
PAO3APBO1B29.8°60.0°
PAO3APBO2B151.0°59.9°
PAO3APBO5D86.7°180.0°
O3APBO1BO2B121.6°119.9°
O3APBO1BO5D116.8°120.1°
O3APBO2BO5D120.0°120.1°
O3APBO2BHOB2180.0°60.1°
O3APBO5DC5D89.2°180.0°
O1BPBO2BO5D118.8°120.0°
O1BPBO2BHOB258.8°180.0°
O1BPBO5DC5D152.6°60.0°
O2BPBO5DC5D32.3°59.9°
O5DPBO2BHOB260.0°60.0°
PBO5DC5DC4D113.4°180.0°
PBO5DC5DH5R1121.4°59.9°
PBO5DC5DH5R212.0°60.1°
O5DC5DC4DH5R1125.3°120.1°
O5DC5DC4DH5R2125.3°119.9°
O5DC5DH5R1H5R2114.8°119.9°
O5DC5DC4DO4D1.5°61.8°
O5DC5DC4DC3D114.5°179.8°
O5DC5DC4DHR'4122.6°59.2°
C4DC5DH5R1H5R2114.7°119.9°
C5DC4DO4DC1D113.4°146.0°
C5DC4DO4DC3D116.6°119.5°
C5DC4DO4DHR'4120.5°121.0°
C5DC4DC3DC2D99.7°121.4°
C5DC4DC3DO3D142.5°119.8°
C5DC4DC3DHR'4120.3°121.0°
C5DC4DC3DHR'322.5°2.8°
H5R1C5DC4DO4D126.8°58.3°
H5R1C5DC4DC3D10.7°59.6°
H5R1C5DC4DHR'4112.1°179.3°
H5R2C5DC4DO4D123.8°178.3°
H5R2C5DC4DC3D120.1°60.3°
H5R2C5DC4DHR'42.7°60.7°
O4DC1DO1DC2D116.5°114.1°
O4DC1DO1DHR'1122.0°122.9°
O4DC1DO1DHOR1179.9°61.5°
O4DC1DC2DHR'1121.9°118.4°
O4DC1DC2DO2D145.4°155.3°
O4DC1DC2DC3D26.1°37.1°
O4DC1DC2DHR'295.5°81.2°
C1DO4DC4DC3D3.3°26.4°
C1DO4DC4DHR'4126.1°93.1°
C4DO4DC1DO1D132.3°158.7°
C4DO4DC1DC2D14.0°40.0°
C4DO4DC1DHR'1107.4°78.4°
O4DC4DC3DC2D19.1°1.9°
O4DC4DC3DO3D98.7°120.7°
O4DC4DC3DHR'4120.8°119.5°
O4DC4DC3DHR'3141.3°116.7°
O1DC1DC2DHR'1120.4°123.0°
O1DC1DC2DO2D96.9°86.1°
O1DC1DC2DC3D143.8°155.7°
O1DC1DC2DHR'222.3°37.4°
HOR1O1DC1DC2D63.4°175.6°
HOR1O1DC1DHR'158.1°61.4°
C1DC2DO2DC3D116.6°112.7°
C1DC2DO2DHR'2121.8°123.6°
C1DC2DO2DHOR2180.0°61.4°
C1DC2DC3DHR'2121.7°118.2°
C1DC2DC3DO3D89.7°98.0°
C1DC2DC3DC4D27.7°21.0°
C1DC2DC3DHR'3150.2°139.5°
HR'1C1DC2DO2D23.5°36.8°
HR'1C1DC2DC3D95.8°81.3°
HR'1C1DC2DHR'2142.7°160.4°
O2DC2DC3DHR'2119.1°123.6°
O2DC2DC3DO3D29.5°20.2°
O2DC2DC3DC4D146.9°139.2°
O2DC2DC3DHR'390.6°102.3°
HOR2O2DC2DC3D63.4°174.1°
HOR2O2DC2DHR'258.2°62.1°
C2DC3DO3DC4D114.7°114.8°
C2DC3DO3DHR'3122.5°122.5°
C2DC3DO3DHOR3179.9°61.4°
C2DC3DC4DHR'3122.2°118.5°
C2DC3DC4DHR'4139.9°117.6°
HR'2C2DC3DO3D148.6°143.8°
HR'2C2DC3DC4D94.0°97.2°
HR'2C2DC3DHR'328.5°21.3°
O3DC3DC4DHR'3120.1°122.6°
O3DC3DC4DHR'422.2°1.2°
HOR3O3DC3DC4D65.3°176.2°
HOR3O3DC3DHR'357.5°61.1°
HR'3C3DC4DHR'497.9°123.8°

225158

PDB entries from 2024-09-18

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