APM
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.46Å | |
| N | H | sing | 1.01Å | 1.02Å | |
| N | H2 | sing | 1.01Å | 1.02Å | |
| CA | C | sing | 1.51Å | 1.54Å | |
| CA | CB | sing | 1.53Å | 1.54Å | |
| CA | HA | sing | 1.09Å | 1.12Å | |
| C | O | doub | 1.21Å | 1.24Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| CB | CG | sing | 1.51Å | 1.53Å | |
| CB | HB2 | sing | 1.09Å | 1.12Å | |
| CB | HB3 | sing | 1.09Å | 1.11Å | |
| CG | CD1 | doub | 1.38Å | 1.38Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.38Å | Aromatic |
| CD1 | CE1 | sing | 1.39Å | 1.38Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.10Å | |
| CD2 | CE2 | doub | 1.38Å | 1.37Å | Aromatic |
| CD2 | HD2 | sing | 1.08Å | 1.10Å | |
| CE1 | CZ | doub | 1.39Å | 1.40Å | Aromatic |
| CE1 | CF | sing | 1.48Å | 1.41Å | |
| CE2 | CZ | sing | 1.38Å | 1.38Å | Aromatic |
| CE2 | HE2 | sing | 1.08Å | 1.10Å | |
| CZ | HZ | sing | 1.08Å | 1.10Å | |
| CF | NG1 | doub | 1.30Å | 1.35Å | |
| CF | NG2 | sing | 1.38Å | 1.35Å | |
| NG1 | HG1 | sing | 0.97Å | 1.02Å | |
| NG2 | HG21 | sing | 0.97Å | 1.02Å | |
| NG2 | HG22 | sing | 0.97Å | 1.02Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 112.4° | 106.7° |
| CA | N | H2 | 111.1° | 106.7° |
| N | CA | C | 112.5° | 109.5° |
| N | CA | CB | 109.2° | 109.5° |
| N | CA | HA | 108.2° | 109.4° |
| H | N | H2 | 111.1° | 106.7° |
| C | CA | CB | 111.0° | 109.5° |
| C | CA | HA | 106.2° | 109.4° |
| CA | C | O | 118.4° | 120.0° |
| CA | C | OXT | 120.6° | 120.0° |
| CB | CA | HA | 109.7° | 109.4° |
| CA | CB | CG | 116.4° | 109.5° |
| CA | CB | HB2 | 109.7° | 109.4° |
| CA | CB | HB3 | 109.7° | 109.5° |
| O | C | OXT | 120.9° | 120.0° |
| C | OXT | HXT | 120.6° | 120.0° |
| CG | CB | HB2 | 109.7° | 109.5° |
| CG | CB | HB3 | 109.7° | 109.5° |
| CB | CG | CD1 | 121.3° | 120.0° |
| CB | CG | CD2 | 120.6° | 119.9° |
| HB2 | CB | HB3 | 100.4° | 109.5° |
| CD1 | CG | CD2 | 118.1° | 120.1° |
| CG | CD1 | CE1 | 124.4° | 119.9° |
| CG | CD1 | HD1 | 117.8° | 120.0° |
| CG | CD2 | CE2 | 119.1° | 120.3° |
| CG | CD2 | HD2 | 120.8° | 119.9° |
| CE1 | CD1 | HD1 | 117.8° | 120.1° |
| CD1 | CE1 | CZ | 116.0° | 119.7° |
| CD1 | CE1 | CF | 122.4° | 120.1° |
| CE2 | CD2 | HD2 | 120.2° | 119.8° |
| CD2 | CE2 | CZ | 122.0° | 120.1° |
| CD2 | CE2 | HE2 | 118.8° | 119.9° |
| CZ | CE1 | CF | 121.5° | 120.1° |
| CE1 | CZ | CE2 | 120.4° | 119.8° |
| CE1 | CZ | HZ | 120.4° | 120.1° |
| CE1 | CF | NG1 | 119.2° | 120.0° |
| CE1 | CF | NG2 | 120.1° | 120.0° |
| CZ | CE2 | HE2 | 119.2° | 120.0° |
| CE2 | CZ | HZ | 119.2° | 120.1° |
| NG1 | CF | NG2 | 120.7° | 120.0° |
| CF | NG1 | HG1 | 112.5° | 120.0° |
| CF | NG2 | HG21 | 120.1° | 120.0° |
| CF | NG2 | HG22 | 108.3° | 120.0° |
| HG21 | NG2 | HG22 | 108.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 125.2° | 113.7° |
| N | CA | C | CB | 122.6° | 120.1° |
| N | CA | C | HA | 118.2° | 120.0° |
| N | CA | CB | HA | 118.4° | 120.0° |
| N | CA | C | O | 31.1° | 30.0° |
| N | CA | C | OXT | 151.6° | 149.9° |
| N | CA | CB | CG | 89.4° | 59.9° |
| N | CA | CB | HB2 | 145.3° | 60.0° |
| N | CA | CB | HB3 | 35.9° | 180.0° |
| H | N | CA | C | 180.0° | 173.8° |
| H | N | CA | CB | 56.4° | 53.7° |
| H | N | CA | HA | 63.0° | 66.3° |
| H2 | N | CA | C | 54.8° | 60.0° |
| H2 | N | CA | CB | 68.9° | 60.0° |
| H2 | N | CA | HA | 171.8° | 180.0° |
| C | CA | CB | HA | 117.1° | 120.0° |
| CA | C | O | OXT | 177.3° | 179.9° |
| C | CA | CB | CG | 35.1° | 180.0° |
| C | CA | CB | HB2 | 90.2° | 60.0° |
| C | CA | CB | HB3 | 160.4° | 59.9° |
| CA | C | OXT | HXT | 180.0° | 180.0° |
| CB | CA | C | O | 91.5° | 90.1° |
| CB | CA | C | OXT | 85.8° | 90.0° |
| CA | CB | CG | HB2 | 125.3° | 120.0° |
| CA | CB | CG | HB3 | 125.3° | 120.0° |
| CA | CB | HB2 | HB3 | 115.5° | 120.0° |
| CA | CB | CG | CD1 | 88.4° | 90.3° |
| CA | CB | CG | CD2 | 93.6° | 90.0° |
| HA | CA | C | O | 149.3° | 150.0° |
| HA | CA | C | OXT | 33.4° | 29.9° |
| HA | CA | CB | CG | 152.2° | 60.0° |
| HA | CA | CB | HB2 | 26.9° | 180.0° |
| HA | CA | CB | HB3 | 82.5° | 60.0° |
| O | C | OXT | HXT | 2.7° | 0.1° |
| CG | CB | HB2 | HB3 | 115.5° | 120.0° |
| CB | CG | CD1 | CD2 | 178.0° | 179.7° |
| CB | CG | CD1 | CE1 | 177.8° | 179.7° |
| CB | CG | CD1 | HD1 | 2.1° | 0.2° |
| CB | CG | CD2 | CE2 | 178.1° | 180.0° |
| CB | CG | CD2 | HD2 | 1.8° | 0.0° |
| HB2 | CB | CG | CD1 | 146.3° | 149.7° |
| HB2 | CB | CG | CD2 | 31.6° | 30.0° |
| HB3 | CB | CG | CD1 | 36.9° | 29.7° |
| HB3 | CB | CG | CD2 | 141.1° | 150.0° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.5° |
| CD1 | CG | CD2 | CE2 | 0.1° | 0.2° |
| CD1 | CG | CD2 | HD2 | 179.9° | 179.8° |
| CG | CD1 | CE1 | CZ | 0.4° | 0.6° |
| CG | CD1 | CE1 | CF | 178.7° | 179.7° |
| CD2 | CG | CD1 | CE1 | 0.2° | 0.5° |
| CD2 | CG | CD1 | HD1 | 179.8° | 180.0° |
| CG | CD2 | CE2 | HD2 | 180.0° | 180.0° |
| CG | CD2 | CE2 | CZ | 0.2° | 0.0° |
| CG | CD2 | CE2 | HE2 | 179.8° | 180.0° |
| CD1 | CE1 | CZ | CF | 179.1° | 179.7° |
| CD1 | CE1 | CZ | CE2 | 0.3° | 0.3° |
| CD1 | CE1 | CZ | HZ | 179.7° | 179.7° |
| CD1 | CE1 | CF | NG1 | 179.4° | 0.3° |
| CD1 | CE1 | CF | NG2 | 1.6° | 179.8° |
| HD1 | CD1 | CE1 | CZ | 179.6° | 179.9° |
| HD1 | CD1 | CE1 | CF | 1.3° | 0.2° |
| CD2 | CE2 | CZ | CE1 | 0.0° | 0.1° |
| CD2 | CE2 | CZ | HE2 | 179.9° | 179.9° |
| CD2 | CE2 | CZ | HZ | 180.0° | 180.0° |
| HD2 | CD2 | CE2 | CZ | 179.8° | 180.0° |
| HD2 | CD2 | CE2 | HE2 | 0.2° | 0.0° |
| CE1 | CZ | CE2 | HZ | 180.0° | 179.9° |
| CE1 | CZ | CE2 | HE2 | 179.9° | 180.0° |
| CZ | CE1 | CF | NG1 | 0.4° | 180.0° |
| CZ | CE1 | CF | NG2 | 179.3° | 0.1° |
| CF | CE1 | CZ | CE2 | 178.8° | 180.0° |
| CF | CE1 | CZ | HZ | 1.2° | 0.0° |
| CE1 | CF | NG1 | NG2 | 178.9° | 179.9° |
| CE1 | CF | NG1 | HG1 | 31.6° | 180.0° |
| CE1 | CF | NG2 | HG21 | 180.0° | 180.0° |
| CE1 | CF | NG2 | HG22 | 54.7° | 0.1° |
| HE2 | CE2 | CZ | HZ | 0.0° | 0.1° |
| NG1 | CF | NG2 | HG21 | 1.1° | 0.1° |
| NG1 | CF | NG2 | HG22 | 124.2° | 180.0° |
| NG2 | CF | NG1 | HG1 | 147.3° | 0.1° |
| CF | NG2 | HG21 | HG22 | 125.2° | 179.9° |
