Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

APK

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
OCdoub1.21Å1.22Å
CCAsing1.51Å1.49Å
CHCsing1.08Å1.08Å
CANsing1.47Å1.46Å
CACBsing1.53Å1.54Å
CAHAsing1.09Å1.10Å
NHsing1.01Å1.00Å
NH2sing1.01Å1.00Å
CBCGsing1.53Å1.49Å
CBHB2sing1.09Å1.10Å
CBHB3sing1.09Å1.10Å
CGCDsing1.53Å1.55Å
CGHG2sing1.09Å1.10Å
CGHG3sing1.09Å1.10Å
CDCEsing1.53Å1.52Å
CDHD2sing1.09Å1.10Å
CDHD3sing1.09Å1.10Å
CENZsing1.47Å1.47Å
CEHE2sing1.09Å1.10Å
CEHE3sing1.09Å1.10Å
NZPsing1.68Å1.65Å
NZHZsing1.01Å1.00Å
PO1Pdoub1.48Å1.49Å
PO2Psing1.61Å1.47Å
PO5'sing1.61Å1.59Å
O2PHO2Psing0.97Å0.95Å
O5'C5'sing1.43Å1.38Å
C5'C4'sing1.53Å1.52Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'O4'sing1.44Å1.43Å
C4'C3'sing1.54Å1.51Å
C4'H4'sing1.09Å1.10Å
O4'C1'sing1.44Å1.46Å
C3'O3'sing1.43Å1.38Å
C3'C2'sing1.55Å1.48Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
C2'O2'sing1.43Å1.41Å
C2'C1'sing1.55Å1.50Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
C1'N9sing1.47Å1.45Å
C1'H1'sing1.09Å1.10Å
N9C8sing1.36Å1.33ÅAromatic
N9C4sing1.37Å1.34ÅAromatic
C8N7doub1.30Å1.31ÅAromatic
C8H8sing1.08Å1.08Å
N7C5sing1.35Å1.34ÅAromatic
C5C4doub1.40Å1.38ÅAromatic
C5C6sing1.41Å1.39ÅAromatic
C4N3sing1.33Å1.35ÅAromatic
N3C2doub1.32Å1.31ÅAromatic
C2N1sing1.32Å1.33ÅAromatic
C2HC2sing1.08Å1.08Å
N1C6doub1.33Å1.33ÅAromatic
C6N6sing1.38Å1.35Å
N6HN61sing0.97Å1.00Å
N6HN62sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
OCCA119.3°120.0°
OCHC120.3°120.0°
CACHC120.3°120.0°
CCAN104.0°109.5°
CCACB108.4°109.5°
CCAHA113.8°109.4°
NCACB110.0°109.5°
NCAHA112.3°109.5°
CANH109.5°106.7°
CANH2109.5°106.7°
CBCAHA108.2°109.5°
CACBCG110.6°109.4°
CACBHB2108.8°109.5°
CACBHB3109.1°109.5°
HNH2109.5°106.7°
CGCBHB2108.8°109.4°
CGCBHB3109.1°109.5°
CBCGCD111.2°109.4°
CBCGHG2108.5°109.5°
CBCGHG3108.9°109.5°
HB2CBHB3110.4°109.5°
CDCGHG2108.5°109.4°
CDCGHG3108.9°109.5°
CGCDCE109.9°109.4°
CGCDHD2109.2°109.5°
CGCDHD3109.3°109.5°
HG2CGHG3110.8°109.5°
CECDHD2109.3°109.4°
CECDHD3109.3°109.5°
CDCENZ109.2°109.5°
CDCEHE2109.6°109.5°
CDCEHE3109.6°109.5°
HD2CDHD3109.8°109.5°
NZCEHE2109.6°109.4°
NZCEHE3109.6°109.5°
CENZP111.6°106.7°
CENZHZ108.8°106.7°
HE2CEHE3109.3°109.5°
PNZHZ108.8°106.7°
NZPO1P111.5°109.5°
NZPO2P107.7°109.5°
NZPO5'99.2°109.5°
O1PPO2P118.6°109.5°
O1PPO5'112.5°109.5°
O2PPO5'105.4°109.5°
PO2PHO2P109.5°106.7°
PO5'C5'119.9°106.8°
O5'C5'C4'112.6°109.5°
O5'C5'H5'1107.7°109.5°
O5'C5'H5'2108.4°109.5°
C4'C5'H5'1107.7°109.4°
C4'C5'H5'2108.4°109.4°
C5'C4'O4'103.7°109.9°
C5'C4'C3'109.6°109.9°
C5'C4'H4'111.8°109.9°
H5'1C5'H5'2112.0°109.5°
O4'C4'C3'105.2°107.4°
O4'C4'H4'115.7°109.8°
C4'O4'C1'108.5°107.0°
C3'C4'H4'110.5°109.9°
C4'C3'O3'106.2°110.8°
C4'C3'C2'103.4°104.0°
C4'C3'H3'112.7°110.4°
O4'C1'C2'106.8°103.5°
O4'C1'N9108.7°110.6°
O4'C1'H1'113.6°110.6°
O3'C3'C2'100.8°110.5°
O3'C3'H3'114.9°110.4°
C3'O3'HO3'109.5°106.8°
C2'C3'H3'117.3°110.5°
C3'C2'O2'105.5°110.8°
C3'C2'C1'102.6°102.1°
C3'C2'H2'115.3°110.9°
O2'C2'C1'106.9°110.9°
O2'C2'H2'111.6°110.8°
C2'O2'HO2'109.5°106.8°
C1'C2'H2'114.1°110.9°
C2'C1'N9114.4°110.8°
C2'C1'H1'107.7°110.7°
N9C1'H1'105.8°110.6°
C1'N9C8124.3°126.3°
C1'N9C4126.8°126.3°
C8N9C4108.8°107.5°
N9C8N7109.4°109.9°
N9C8H8125.3°125.0°
N9C4C5105.7°106.0°
N9C4N3133.8°134.9°
N7C8H8125.3°125.0°
C8N7C5108.0°109.5°
N7C5C4108.0°107.2°
N7C5C6133.3°134.7°
C4C5C6118.7°118.1°
C5C4N3120.5°119.1°
C5C6N1117.7°118.5°
C5C6N6121.0°120.8°
C4N3C2118.9°120.6°
N3C2N1121.9°122.5°
N3C2HC2119.0°118.7°
N1C2HC2119.1°118.8°
C2N1C6122.3°121.2°
N1C6N6121.3°120.8°
C6N6HN61125.3°120.0°
C6N6HN62109.5°120.0°
HN61N6HN62125.3°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
OCCAHC180.0°180.0°
OCCAN41.7°0.0°
OCCACB75.4°120.0°
OCCAHA164.2°120.0°
CCANCB116.0°120.0°
CCANHA123.5°119.9°
CCACBHA123.8°119.9°
CCANH18.4°60.0°
CCANH2101.6°173.8°
CCACBCG72.2°175.0°
CCACBHB247.3°65.0°
CCACBHB3167.8°55.0°
HCCCAN138.3°180.0°
HCCCACB104.6°60.0°
HCCCAHA15.8°60.0°
NCACBHA123.0°120.1°
CANHH2120.0°113.7°
NCACBCG174.6°65.0°
NCACBHB265.9°55.0°
NCACBHB354.6°175.0°
CBCANH97.6°60.0°
CBCANH2142.4°53.7°
CACBCGHB2119.5°119.9°
CACBCGHB3120.0°120.0°
CACBHB2HB3119.7°120.0°
CACBCGCD176.7°180.0°
CACBCGHG264.0°60.1°
CACBCGHG356.7°60.0°
HACANH141.9°180.0°
HACANH221.9°66.3°
HACACBCG51.6°55.1°
HACACBHB2171.1°175.0°
HACACBHB368.4°64.9°
CGCBHB2HB3119.7°120.0°
CBCGCDHG2119.3°120.0°
CBCGCDHG3120.0°120.0°
CBCGHG2HG3119.6°120.1°
CBCGCDCE177.8°180.0°
CBCGCDHD257.9°60.1°
CBCGCDHD362.2°60.0°
HB2CBCGCD57.2°60.0°
HB2CBCGHG2176.5°180.0°
HB2CBCGHG362.8°60.0°
HB3CBCGCD63.3°60.0°
HB3CBCGHG256.0°60.0°
HB3CBCGHG3176.7°180.0°
CDCGHG2HG3119.5°120.0°
CGCDCEHD2119.8°119.9°
CGCDCEHD3120.0°120.0°
CGCDHD2HD3119.9°120.0°
CGCDCENZ63.4°180.0°
CGCDCEHE2176.5°60.0°
CGCDCEHE356.6°60.0°
HG2CGCDCE62.9°60.0°
HG2CGCDHD2177.2°180.0°
HG2CGCDHD357.1°60.0°
HG3CGCDCE57.8°60.0°
HG3CGCDHD262.1°60.0°
HG3CGCDHD3177.8°180.0°
CECDHD2HD3119.9°120.0°
CDCENZHE2120.1°120.0°
CDCENZHE3120.0°120.0°
CDCEHE2HE3120.1°120.0°
CDCENZP167.3°135.0°
CDCENZHZ72.7°111.3°
HD2CDCENZ56.5°60.1°
HD2CDCEHE263.6°180.0°
HD2CDCEHE3176.5°60.0°
HD3CDCENZ176.6°60.0°
HD3CDCEHE256.5°60.0°
HD3CDCEHE363.4°180.0°
NZCEHE2HE3120.1°120.0°
CENZPHZ120.0°113.8°
CENZPO1P175.8°180.0°
CENZPO2P44.0°60.0°
CENZPO5'65.5°60.0°
HE2CENZP72.6°15.0°
HE2CENZHZ47.4°128.7°
HE3CENZP47.3°105.0°
HE3CENZHZ167.3°8.8°
NZPO1PO2P126.0°120.0°
NZPO1PO5'110.5°120.0°
NZPO2PO5'105.2°120.0°
NZPO2PHO2P45.0°60.0°
NZPO5'C5'86.3°70.0°
HZNZPO1P55.8°66.2°
HZNZPO2P76.0°53.8°
HZNZPO5'174.5°173.8°
O1PPO2PO5'127.0°120.0°
O1PPO2PHO2P82.8°180.0°
O1PPO5'C5'31.7°50.0°
O2PPO5'C5'162.4°170.0°
O5'PO2PHO2P150.2°60.0°
PO5'C5'C4'153.8°180.0°
PO5'C5'H5'187.6°60.0°
PO5'C5'H5'233.8°60.1°
O5'C5'C4'H5'1118.6°120.0°
O5'C5'C4'H5'2120.0°120.0°
O5'C5'H5'1H5'2119.1°120.1°
O5'C5'C4'O4'151.7°66.7°
O5'C5'C4'C3'39.8°175.3°
O5'C5'C4'H4'83.0°54.3°
C4'C5'H5'1H5'2119.1°119.9°
C5'C4'O4'C3'115.1°119.5°
C5'C4'O4'H4'122.8°121.0°
C5'C4'C3'H4'123.5°121.0°
C5'C4'O4'C1'132.4°145.9°
C5'C4'C3'O3'109.8°119.8°
C5'C4'C3'C2'144.6°121.4°
C5'C4'C3'H3'16.9°2.8°
H5'1C5'C4'O4'33.0°53.3°
H5'1C5'C4'C3'78.9°64.7°
H5'1C5'C4'H4'158.4°174.3°
H5'2C5'C4'O4'88.3°173.3°
H5'2C5'C4'C3'159.8°55.3°
H5'2C5'C4'H4'37.0°65.7°
O4'C4'C3'H4'125.5°119.4°
O4'C4'C3'O3'139.3°120.6°
O4'C4'C3'C2'33.6°1.9°
O4'C4'C3'H3'94.0°116.7°
C4'O4'C1'C2'5.4°40.0°
C4'O4'C1'N9118.5°158.7°
C4'O4'C1'H1'124.0°78.5°
C3'C4'O4'C1'17.4°26.4°
C4'C3'O3'C2'107.6°114.7°
C4'C3'O3'H3'125.3°122.7°
C4'C3'C2'H3'124.7°118.6°
C4'C3'O3'HO3'108.2°176.2°
C4'C3'C2'O2'75.8°139.2°
C4'C3'C2'C1'35.9°21.0°
C4'C3'C2'H2'160.6°97.3°
H4'C4'O4'C1'104.8°93.1°
H4'C4'C3'O3'13.8°1.2°
H4'C4'C3'C2'91.9°117.5°
H4'C4'C3'H3'140.5°123.9°
O4'C1'C2'C3'26.1°37.1°
O4'C1'C2'O2'84.7°155.2°
O4'C1'C2'N9120.3°118.6°
O4'C1'C2'H1'122.4°118.5°
O4'C1'C2'H2'151.5°81.2°
O4'C1'N9H1'122.3°122.8°
O4'C1'N9C814.2°23.6°
O4'C1'N9C4170.2°156.8°
O3'C3'C2'H3'125.6°122.5°
O3'C3'C2'O2'33.9°20.3°
O3'C3'C2'C1'145.7°97.9°
O3'C3'C2'H2'89.7°143.8°
C2'C3'O3'HO3'144.2°61.4°
C3'C2'O2'C1'108.7°112.7°
C3'C2'O2'H2'125.9°123.6°
C3'C2'C1'H2'125.4°118.2°
C3'C2'O2'HO2'7.9°67.3°
C3'C2'C1'N994.2°155.6°
C3'C2'C1'H1'148.4°81.4°
H3'C3'O3'HO3'17.1°61.1°
H3'C3'C2'O2'159.4°102.2°
H3'C3'C2'C1'88.8°139.6°
H3'C3'C2'H2'35.9°21.3°
O2'C2'C1'H2'123.8°123.6°
O2'C2'C1'N9155.0°86.2°
O2'C2'C1'H1'37.7°36.8°
C1'C2'O2'HO2'100.8°180.0°
C2'C1'N9H1'118.4°123.1°
C2'C1'N9C8133.5°90.6°
C2'C1'N9C450.9°89.1°
H2'C2'O2'HO2'133.8°56.3°
H2'C2'C1'N931.2°37.4°
H2'C2'C1'H1'86.1°160.4°
C1'N9C8C4176.3°179.7°
C1'N9C8N7176.4°179.9°
C1'N9C8H83.6°0.0°
C1'N9C4C5176.7°179.9°
C1'N9C4N32.5°0.8°
H1'C1'N9C8108.1°146.4°
H1'C1'N9C467.5°34.0°
N9C8N7H8180.0°180.0°
N9C8N7C50.4°0.0°
C8N9C4C50.6°0.4°
C8N9C4N3178.6°179.5°
C4N9C8N70.1°0.2°
C4N9C8H8179.9°179.7°
N9C4C5N70.8°0.4°
N9C4C5N3179.3°179.3°
N9C4C5C6179.6°179.8°
N9C4N3C2178.9°179.5°
C8N7C5C40.8°0.3°
C8N7C5C6179.8°180.0°
H8C8N7C5179.6°180.0°
N7C5C4C6179.5°179.8°
N7C5C4N3178.5°179.7°
N7C5C6N1179.5°180.0°
N7C5C6N60.0°0.0°
C5C4N3C21.9°0.5°
C4C5C6N10.1°0.3°
C4C5C6N6179.3°179.7°
C6C5C4N31.0°0.5°
C5C6N1C20.3°0.0°
C5C6N1N6179.4°180.0°
C5C6N6HN61179.7°0.0°
C5C6N6HN620.3°180.0°
C4N3C2N11.8°0.3°
C4N3C2HC2178.2°179.7°
N3C2N1HC2180.0°180.0°
N3C2N1C60.7°0.0°
C2N1C6N6179.1°180.0°
HC2C2N1C6179.3°180.0°
N1C6N6HN610.3°180.0°
N1C6N6HN62179.7°0.0°
C6N6HN61HN62180.0°180.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon