AP7
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1' | N9 | sing | 1.47Å | 1.48Å | |
| C1' | C2' | sing | 1.55Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.41Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| N1 | C2 | sing | 1.32Å | 1.35Å | Aromatic |
| N1 | C6 | doub | 1.33Å | 1.36Å | Aromatic |
| N1 | H1 | sing | 0.97Å | 1.00Å | |
| C2 | N3 | doub | 1.32Å | 1.35Å | Aromatic |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
| C4 | C5 | doub | 1.40Å | 1.36Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.37Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.41Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.37Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.36Å | |
| N6 | H61 | sing | 0.97Å | 1.00Å | |
| N6 | H62 | sing | 0.97Å | 1.00Å | |
| N7 | C8 | doub | 1.30Å | 1.33Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.35Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C2' | O2' | sing | 1.43Å | 1.41Å | |
| C2' | C3' | sing | 1.55Å | 1.50Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| OP2 | P | sing | 1.61Å | 1.48Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 85.78Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| N9 | C1' | C2' | 113.5° | 110.6° |
| N9 | C1' | O4' | 111.2° | 110.6° |
| N9 | C1' | H1' | 103.6° | 110.5° |
| C1' | N9 | C4 | 126.3° | 126.3° |
| C1' | N9 | C8 | 127.4° | 126.3° |
| C2' | C1' | O4' | 102.5° | 103.5° |
| C2' | C1' | H1' | 112.0° | 110.6° |
| C1' | C2' | O2' | 115.4° | 110.9° |
| C1' | C2' | C3' | 100.7° | 102.1° |
| C1' | C2' | H2' | 109.5° | 110.9° |
| O4' | C1' | H1' | 114.3° | 110.8° |
| C1' | O4' | C4' | 116.5° | 106.9° |
| C2 | N1 | C6 | 118.5° | 121.2° |
| C2 | N1 | H1 | 120.7° | 119.4° |
| N1 | C2 | N3 | 129.1° | 122.5° |
| N1 | C2 | H2 | 115.4° | 118.8° |
| C6 | N1 | H1 | 120.8° | 119.4° |
| N1 | C6 | C5 | 117.4° | 118.5° |
| N1 | C6 | N6 | 118.1° | 120.8° |
| N3 | C2 | H2 | 115.5° | 118.7° |
| C2 | N3 | C4 | 109.5° | 120.6° |
| N3 | C4 | C5 | 128.0° | 119.1° |
| N3 | C4 | N9 | 125.9° | 134.9° |
| C5 | C4 | N9 | 106.1° | 106.0° |
| C4 | C5 | C6 | 117.4° | 118.2° |
| C4 | C5 | N7 | 111.0° | 107.1° |
| C4 | N9 | C8 | 106.3° | 107.5° |
| C6 | C5 | N7 | 131.5° | 134.7° |
| C5 | C6 | N6 | 124.5° | 120.8° |
| C5 | N7 | C8 | 103.9° | 109.5° |
| C6 | N6 | H61 | 120.0° | 120.0° |
| C6 | N6 | H62 | 120.0° | 120.0° |
| H61 | N6 | H62 | 120.0° | 120.0° |
| N7 | C8 | N9 | 112.7° | 109.9° |
| N7 | C8 | H8 | 123.6° | 125.0° |
| N9 | C8 | H8 | 123.6° | 125.1° |
| O2' | C2' | C3' | 102.6° | 110.9° |
| O2' | C2' | H2' | 107.7° | 110.8° |
| C2' | O2' | HO2' | 109.5° | 114.1° |
| C3' | C2' | H2' | 121.1° | 110.9° |
| C2' | C3' | O3' | 111.5° | 110.5° |
| C2' | C3' | C4' | 105.3° | 104.2° |
| C2' | C3' | H3' | 110.8° | 110.5° |
| O3' | C3' | C4' | 109.4° | 110.5° |
| O3' | C3' | H3' | 106.8° | 110.4° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 112.9° | 110.6° |
| C3' | C4' | O4' | 93.5° | 107.3° |
| C3' | C4' | C5' | 114.4° | 109.9° |
| C3' | C4' | H4' | 116.4° | 109.9° |
| O4' | C4' | C5' | 109.2° | 109.9° |
| O4' | C4' | H4' | 121.1° | 109.8° |
| C5' | C4' | H4' | 102.6° | 110.0° |
| C4' | C5' | O5' | 110.1° | 109.5° |
| C4' | C5' | H5'' | 109.2° | 109.5° |
| C4' | C5' | H5' | 109.3° | 109.5° |
| O5' | C5' | H5'' | 109.3° | 109.4° |
| O5' | C5' | H5' | 109.3° | 109.5° |
| C5' | O5' | P | 120.0° | 123.0° |
| H5'' | C5' | H5' | 109.7° | 109.5° |
| O5' | P | OP1 | 108.0° | 109.5° |
| O5' | P | OP2 | 108.0° | 109.5° |
| O5' | P | OP3 | 133.9° | 109.5° |
| OP1 | P | OP2 | 117.4° | 109.4° |
| OP1 | P | OP3 | 114.6° | 109.5° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| OP2 | P | OP3 | 67.0° | 109.5° |
| P | OP3 | HOP3 | 133.9° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| N9 | C1' | C2' | O4' | 120.0° | 118.5° |
| N9 | C1' | C2' | H1' | 116.9° | 122.8° |
| N9 | C1' | O4' | H1' | 116.9° | 122.9° |
| C1' | N9 | C4 | N3 | 0.0° | 0.1° |
| C1' | N9 | C4 | C5 | 180.0° | 180.0° |
| C1' | N9 | C4 | C8 | 180.0° | 180.0° |
| C1' | N9 | C8 | N7 | 180.0° | 180.0° |
| C1' | N9 | C8 | H8 | 0.0° | 0.0° |
| N9 | C1' | C2' | O2' | 148.3° | 86.3° |
| N9 | C1' | C2' | C3' | 102.0° | 155.5° |
| N9 | C1' | C2' | H2' | 26.6° | 37.3° |
| N9 | C1' | O4' | C4' | 133.6° | 158.6° |
| C2' | C1' | O4' | H1' | 121.5° | 118.6° |
| C2' | C1' | N9 | C4 | 92.5° | 85.0° |
| C2' | C1' | N9 | C8 | 87.5° | 95.0° |
| C1' | C2' | O2' | C3' | 108.5° | 112.8° |
| C1' | C2' | O2' | H2' | 122.7° | 123.6° |
| C1' | C2' | C3' | H2' | 120.7° | 118.2° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C1' | C2' | C3' | O3' | 159.3° | 97.8° |
| C1' | C2' | C3' | C4' | 40.7° | 20.9° |
| C1' | C2' | C3' | H3' | 81.8° | 139.7° |
| C2' | C1' | O4' | C4' | 12.0° | 40.0° |
| O4' | C1' | N9 | C4 | 152.5° | 160.9° |
| O4' | C1' | N9 | C8 | 27.5° | 19.1° |
| O4' | C1' | C2' | O2' | 91.7° | 155.2° |
| O4' | C1' | C2' | C3' | 18.0° | 37.0° |
| O4' | C1' | C2' | H2' | 146.6° | 81.2° |
| C1' | O4' | C4' | C3' | 35.2° | 26.5° |
| C1' | O4' | C4' | C5' | 152.6° | 145.9° |
| C1' | O4' | C4' | H4' | 88.7° | 92.9° |
| H1' | C1' | N9 | C4 | 29.3° | 37.9° |
| H1' | C1' | N9 | C8 | 150.7° | 142.1° |
| H1' | C1' | C2' | O2' | 31.4° | 36.6° |
| H1' | C1' | C2' | C3' | 141.1° | 81.7° |
| H1' | C1' | C2' | H2' | 90.3° | 160.1° |
| H1' | C1' | O4' | C4' | 109.5° | 78.5° |
| C2 | N1 | C6 | H1 | 180.0° | 179.8° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| C2 | N1 | C6 | C5 | 0.1° | 0.1° |
| C2 | N1 | C6 | N6 | 180.0° | 179.9° |
| C6 | N1 | C2 | N3 | 0.1° | 0.0° |
| C6 | N1 | C2 | H2 | 179.9° | 180.0° |
| N1 | C6 | C5 | C4 | 0.0° | 0.1° |
| N1 | C6 | C5 | N6 | 180.0° | 179.9° |
| N1 | C6 | C5 | N7 | 180.0° | 180.0° |
| N1 | C6 | N6 | H61 | 180.0° | 0.1° |
| N1 | C6 | N6 | H62 | 0.0° | 180.0° |
| H1 | N1 | C2 | N3 | 179.9° | 179.8° |
| H1 | N1 | C2 | H2 | 0.1° | 0.2° |
| H1 | N1 | C6 | C5 | 179.9° | 179.8° |
| H1 | N1 | C6 | N6 | 0.0° | 0.1° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| C2 | N3 | C4 | N9 | 179.9° | 180.0° |
| H2 | C2 | N3 | C4 | 179.9° | 180.0° |
| N3 | C4 | C5 | N9 | 180.0° | 180.0° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| N3 | C4 | C5 | N7 | 180.0° | 180.0° |
| N3 | C4 | N9 | C8 | 180.0° | 180.0° |
| C4 | C5 | C6 | N7 | 180.0° | 179.9° |
| C4 | C5 | C6 | N6 | 180.0° | 180.0° |
| C4 | C5 | N7 | C8 | 0.0° | 0.0° |
| C5 | C4 | N9 | C8 | 0.0° | 0.0° |
| N9 | C4 | C5 | C6 | 180.0° | 179.9° |
| N9 | C4 | C5 | N7 | 0.0° | 0.0° |
| C4 | N9 | C8 | N7 | 0.0° | 0.0° |
| C4 | N9 | C8 | H8 | 180.0° | 180.0° |
| C5 | C6 | N6 | H61 | 0.0° | 180.0° |
| C5 | C6 | N6 | H62 | 180.0° | 0.1° |
| C6 | C5 | N7 | C8 | 180.0° | 179.9° |
| N7 | C5 | C6 | N6 | 0.0° | 0.1° |
| C5 | N7 | C8 | N9 | 0.0° | 0.0° |
| C5 | N7 | C8 | H8 | 180.0° | 180.0° |
| C6 | N6 | H61 | H62 | 180.0° | 179.9° |
| N7 | C8 | N9 | H8 | 180.0° | 180.0° |
| O2' | C2' | C3' | H2' | 120.0° | 123.5° |
| O2' | C2' | C3' | O3' | 40.0° | 20.5° |
| O2' | C2' | C3' | C4' | 78.7° | 139.1° |
| O2' | C2' | C3' | H3' | 158.9° | 102.1° |
| C3' | C2' | O2' | HO2' | 71.5° | 67.2° |
| C2' | C3' | O3' | C4' | 116.2° | 114.8° |
| C2' | C3' | O3' | H3' | 121.3° | 122.6° |
| C2' | C3' | C4' | H3' | 121.1° | 118.8° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | O4' | 44.6° | 2.0° |
| C2' | C3' | C4' | C5' | 157.6° | 121.5° |
| C2' | C3' | C4' | H4' | 82.8° | 117.3° |
| H2' | C2' | O2' | HO2' | 57.3° | 56.4° |
| H2' | C2' | C3' | O3' | 80.0° | 144.0° |
| H2' | C2' | C3' | C4' | 161.3° | 97.4° |
| H2' | C2' | C3' | H3' | 38.9° | 21.5° |
| O3' | C3' | C4' | H3' | 118.9° | 122.5° |
| O3' | C3' | C4' | O4' | 164.7° | 120.7° |
| O3' | C3' | C4' | C5' | 82.4° | 119.9° |
| O3' | C3' | C4' | H4' | 37.2° | 1.3° |
| C4' | C3' | O3' | HO3' | 63.8° | 176.3° |
| C3' | C4' | O4' | C5' | 117.4° | 119.5° |
| C3' | C4' | O4' | H4' | 123.9° | 119.4° |
| C3' | C4' | C5' | H4' | 127.0° | 121.2° |
| C3' | C4' | C5' | O5' | 65.9° | 175.0° |
| C3' | C4' | C5' | H5'' | 174.1° | 55.1° |
| C3' | C4' | C5' | H5' | 54.1° | 65.0° |
| H3' | C3' | O3' | HO3' | 58.8° | 61.1° |
| H3' | C3' | C4' | O4' | 76.5° | 116.8° |
| H3' | C3' | C4' | C5' | 36.5° | 2.7° |
| H3' | C3' | C4' | H4' | 156.1° | 123.9° |
| O4' | C4' | C5' | H4' | 129.7° | 121.0° |
| O4' | C4' | C5' | O5' | 37.4° | 67.2° |
| O4' | C4' | C5' | H5'' | 82.6° | 172.9° |
| O4' | C4' | C5' | H5' | 157.4° | 52.9° |
| C4' | C5' | O5' | H5'' | 120.0° | 120.0° |
| C4' | C5' | O5' | H5' | 120.0° | 120.1° |
| C4' | C5' | H5'' | H5' | 119.7° | 120.0° |
| C4' | C5' | O5' | P | 141.9° | 180.0° |
| H4' | C4' | C5' | O5' | 167.1° | 53.8° |
| H4' | C4' | C5' | H5'' | 47.1° | 66.1° |
| H4' | C4' | C5' | H5' | 72.9° | 173.9° |
| O5' | C5' | H5'' | H5' | 119.8° | 120.0° |
| C5' | O5' | P | OP1 | 49.9° | 55.0° |
| C5' | O5' | P | OP2 | 177.9° | 174.9° |
| C5' | O5' | P | OP3 | 107.0° | 65.0° |
| H5'' | C5' | O5' | P | 21.9° | 60.0° |
| H5' | C5' | O5' | P | 98.1° | 59.9° |
| O5' | P | OP1 | OP2 | 122.4° | 120.0° |
| O5' | P | OP1 | OP3 | 161.9° | 120.0° |
| O5' | P | OP2 | OP3 | 130.9° | 120.0° |
| O5' | P | OP2 | HOP2 | 122.4° | 180.0° |
| O5' | P | OP3 | HOP3 | 180.0° | 60.0° |
| OP1 | P | OP2 | OP3 | 106.8° | 120.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 60.0° |
| OP1 | P | OP3 | HOP3 | 24.2° | 180.0° |
| OP2 | P | OP3 | HOP3 | 86.7° | 60.0° |
| HOP2 | OP2 | P | OP3 | 106.7° | 59.9° |
