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SummaryGeometryRelated PDB entries

AOD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OAACANsing1.35Å1.43Å
OABCAOsing1.34Å1.43Å
OACCANdoub1.22Å1.23Å
OADCAOdoub1.21Å1.23Å
BRAECAPsing1.89Å1.82Å
CAFCAGdoub1.38Å1.41ÅAromatic
CAFCAPsing1.39Å1.36ÅAromatic
CAFHAFsing1.08Å1.08Å
CAGCAQsing1.39Å1.39ÅAromatic
CAGHAGsing1.08Å1.08Å
CAHCAPdoub1.38Å1.38ÅAromatic
CAHCARsing1.40Å1.44ÅAromatic
CAHHAHsing1.08Å1.08Å
CAICAJsing1.53Å1.52Å
CAICAKsing1.53Å1.51Å
CAIHAIsing1.09Å1.10Å
CAIHAIAsing1.09Å1.10Å
CAJCASsing1.53Å1.47Å
CAJHAJsing1.09Å1.10Å
CAJHAJAsing1.09Å1.10Å
CAKCATsing1.53Å1.54Å
CAKHAKsing1.09Å1.10Å
CAKHAKAsing1.09Å1.10Å
CALCASsing1.53Å1.48Å
CALCATsing1.53Å1.50Å
CALHALsing1.09Å1.10Å
CALHALAsing1.09Å1.10Å
NAMCAQsing1.39Å1.37Å
NAMCASsing1.47Å1.47Å
NAMHNAMsing0.97Å1.00Å
CANCARsing1.47Å1.50Å
CAOCATsing1.51Å1.48Å
CAQCARdoub1.40Å1.40ÅAromatic
CASHASsing1.09Å1.10Å
CATHATsing1.09Å1.10Å
OAAH15sing0.97Å0.95Å
OABH16sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OAACANOAC122.9°120.0°
OAACANCAR120.5°120.0°
CANOAAH15109.5°117.0°
OABCAOOAD123.9°120.0°
OABCAOCAT114.7°120.0°
CAOOABH16109.5°117.0°
OACCANCAR116.6°120.0°
OADCAOCAT121.4°120.0°
BRAECAPCAF120.0°119.9°
BRAECAPCAH119.6°119.8°
CAGCAFCAP120.6°120.5°
CAGCAFHAF119.7°119.8°
CAFCAGCAQ119.5°120.1°
CAFCAGHAG120.2°120.0°
CAPCAFHAF119.7°119.8°
CAFCAPCAH120.3°120.3°
CAQCAGHAG120.2°120.0°
CAGCAQNAM118.7°120.1°
CAGCAQCAR121.4°119.7°
CAPCAHCAR121.0°119.9°
CAPCAHHAH119.5°120.1°
CARCAHHAH119.5°120.0°
CAHCARCAN118.1°120.2°
CAHCARCAQ117.0°119.6°
CAJCAICAK113.1°109.5°
CAJCAIHAI108.3°109.5°
CAJCAIHAIA108.3°109.4°
CAICAJCAS113.9°109.5°
CAICAJHAJ108.0°109.5°
CAICAJHAJA108.0°109.5°
CAKCAIHAI108.3°109.5°
CAKCAIHAIA108.3°109.4°
CAICAKCAT110.4°109.5°
CAICAKHAK109.1°109.5°
CAICAKHAKA109.2°109.5°
HAICAIHAIA110.6°109.5°
CASCAJHAJ108.0°109.5°
CASCAJHAJA108.0°109.4°
CAJCASCAL113.2°109.5°
CAJCASNAM116.5°109.5°
CAJCASHAS102.6°109.5°
HAJCAJHAJA110.9°109.5°
CATCAKHAK109.2°109.5°
CATCAKHAKA109.1°109.4°
CAKCATCAL115.2°109.5°
CAKCATCAO117.6°109.5°
CAKCATHAT98.9°109.5°
HAKCAKHAKA109.8°109.5°
CASCALCAT117.7°109.5°
CASCALHAL106.8°109.4°
CASCALHALA106.8°109.5°
CALCASNAM113.1°109.5°
CALCASHAS107.0°109.5°
CATCALHAL106.8°109.5°
CATCALHALA106.8°109.5°
CALCATCAO110.9°109.5°
CALCATHAT107.8°109.5°
HALCALHALA112.0°109.5°
CAQNAMCAS117.8°120.0°
CAQNAMHNAM106.8°120.0°
NAMCAQCAR119.8°120.2°
CASNAMHNAM106.7°120.0°
NAMCASHAS102.8°109.4°
CANCARCAQ124.8°120.2°
CAOCATHAT104.6°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OAACANOACCAR178.9°180.0°
OAACANCARCAH15.7°5.9°
OAACANCARCAQ165.9°174.2°
OABCAOOADCAT179.5°179.9°
OABCAOCATCAK35.6°60.0°
OABCAOCATCAL99.9°180.0°
OABCAOCATHAT144.1°60.0°
OACCANCARCAH163.2°174.1°
OACCANCARCAQ15.2°5.8°
OACCANOAAH150.0°0.0°
OADCAOCATCAK143.9°120.1°
OADCAOCATCAL80.6°0.0°
OADCAOCATHAT35.4°119.9°
OADCAOOABH160.0°0.1°
BRAECAPCAFCAG174.9°180.0°
BRAECAPCAFCAH177.0°180.0°
BRAECAPCAFHAF5.1°0.2°
BRAECAPCAHCAR174.9°180.0°
BRAECAPCAHHAH5.2°0.1°
CAGCAFCAPHAF180.0°179.8°
CAFCAGCAQHAG180.0°179.9°
CAGCAFCAPCAH2.0°0.1°
CAFCAGCAQNAM177.9°180.0°
CAFCAGCAQCAR2.0°0.1°
CAPCAFCAGCAQ1.9°0.1°
CAPCAFCAGHAG178.1°180.0°
CAFCAPCAHCAR2.1°0.1°
CAFCAPCAHHAH177.9°180.0°
HAFCAFCAGCAQ178.1°179.7°
HAFCAFCAGHAG1.9°0.2°
HAFCAFCAPCAH178.0°179.7°
CAGCAQCARCAH2.0°0.1°
CAGCAQNAMCAR176.0°180.0°
CAGCAQNAMCAS85.9°5.7°
CAGCAQNAMHNAM154.2°174.3°
CAGCAQCARCAN176.4°180.0°
HAGCAGCAQNAM2.1°0.1°
HAGCAGCAQCAR178.0°179.9°
CAPCAHCARHAH180.0°179.9°
CAPCAHCARCAN176.5°180.0°
CAPCAHCARCAQ2.1°0.1°
CAHCARCAQNAM177.9°180.0°
CAHCARCANCAQ178.4°179.9°
HAHCAHCARCAN3.6°0.1°
HAHCAHCARCAQ177.9°180.0°
CAJCAICAKHAI120.0°120.1°
CAJCAICAKHAIA120.0°120.0°
CAJCAIHAIHAIA118.5°120.0°
CAICAJCASHAJ120.0°120.0°
CAICAJCASHAJA120.0°120.0°
CAICAJHAJHAJA118.2°120.0°
CAJCAICAKCAT51.1°60.0°
CAJCAICAKHAK171.1°180.0°
CAJCAICAKHAKA68.8°59.9°
CAICAJCASCAL47.8°60.0°
CAICAJCASNAM178.6°180.0°
CAICAJCASHAS67.2°60.0°
CAKCAIHAIHAIA118.5°120.0°
CAKCAICAJCAS54.9°60.0°
CAKCAICAJHAJ65.1°60.0°
CAKCAICAJHAJA174.9°180.0°
CAICAKCATHAK120.0°120.0°
CAICAKCATHAKA120.0°120.0°
CAICAKHAKHAKA119.6°120.1°
CAICAKCATCAL44.0°60.0°
CAICAKCATCAO177.6°180.0°
CAICAKCATHAT70.6°60.0°
HAICAICAJCAS65.1°60.0°
HAICAICAJHAJ174.9°180.0°
HAICAICAJHAJA54.9°59.9°
HAICAICAKCAT68.9°60.0°
HAICAICAKHAK51.1°60.0°
HAICAICAKHAKA171.2°180.0°
HAIACAICAJCAS174.9°180.0°
HAIACAICAJHAJ54.9°60.0°
HAIACAICAJHAJA65.1°60.1°
HAIACAICAKCAT171.1°180.0°
HAIACAICAKHAK68.9°60.0°
HAIACAICAKHAKA51.2°60.0°
CASCAJHAJHAJA118.2°120.0°
CAJCASCALNAM135.2°120.0°
CAJCASCALHAS112.3°120.0°
CAJCASCALCAT41.2°60.0°
CAJCASCALHAL78.8°60.0°
CAJCASCALHALA161.2°180.0°
CAJCASNAMCAQ161.8°85.0°
CAJCASNAMHAS111.3°119.9°
CAJCASNAMHNAM41.8°95.0°
HAJCAJCASCAL72.2°60.0°
HAJCAJCASNAM61.4°60.0°
HAJCAJCASHAS172.8°179.9°
HAJACAJCASCAL167.8°180.0°
HAJACAJCASNAM58.6°60.0°
HAJACAJCASHAS52.8°59.9°
CATCAKHAKHAKA119.6°119.9°
CAKCATCALCAS40.1°60.0°
CAKCATCALCAO136.7°120.0°
CAKCATCALHAT109.4°120.0°
CAKCATCALHAL79.9°60.0°
CAKCATCALHALA160.1°180.0°
CAKCATCAOHAT108.5°120.0°
HAKCAKCATCAL163.9°180.0°
HAKCAKCATCAO62.4°60.0°
HAKCAKCATHAT49.3°60.0°
HAKACAKCATCAL76.0°60.0°
HAKACAKCATCAO57.7°60.0°
HAKACAKCATHAT169.4°180.0°
CASCALCATHAL120.0°120.0°
CASCALCATHALA120.0°120.0°
CASCALHALHALA116.6°120.0°
CALCASNAMCAQ64.5°154.9°
CALCASNAMHAS115.0°120.0°
CALCASNAMHNAM175.5°25.0°
CASCALCATCAO176.8°180.0°
CASCALCATHAT69.2°60.0°
CATCALHALHALA116.6°120.0°
CATCALCASNAM176.4°180.0°
CALCATCAOHAT116.0°120.0°
CATCALCASHAS71.2°60.1°
HALCALCASNAM56.4°60.0°
HALCALCATCAO56.8°60.0°
HALCALCASHAS168.8°180.0°
HALCALCATHAT170.7°180.0°
HALACALCASNAM63.6°60.0°
HALACALCATCAO63.2°60.0°
HALACALCASHAS48.8°60.0°
HALACALCATHAT50.8°60.0°
CAQNAMCASHNAM120.0°179.9°
NAMCAQCARCAN0.5°0.0°
CAQNAMCASHAS50.5°34.9°
CASNAMCAQCAR98.1°174.3°
HNAMNAMCAQCAR21.8°5.7°
HNAMNAMCASHAS69.5°145.0°
CARCANOAAH15178.9°180.0°
CATCAOOABH16179.5°180.0°

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PDB entries from 2024-10-09

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