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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CBCGsing1.51Å1.51Å
CGCD1sing1.38Å1.39ÅAromatic
CGCD2doub1.39Å1.38ÅAromatic
CD1CE1doub1.39Å1.41ÅAromatic
CD2CE2sing1.38Å1.41ÅAromatic
CE1CZsing1.38Å1.40ÅAromatic
CE2CZdoub1.38Å1.41ÅAromatic
PO1Psing1.61Å1.53Å
PO2Psing1.61Å1.53Å
PO3Pdoub1.48Å1.52Å
N9C8sing1.36Å1.36ÅAromatic
C8N7doub1.30Å1.35ÅAromatic
N7C5sing1.36Å1.35ÅAromatic
C5C6doub1.40Å1.38ÅAromatic
C6N6sing1.38Å1.36Å
C6N1sing1.33Å1.37ÅAromatic
N1C2doub1.32Å1.37ÅAromatic
C2N3sing1.32Å1.35ÅAromatic
N9C4sing1.37Å1.33ÅAromatic
C5C4sing1.40Å1.39ÅAromatic
N3C4doub1.33Å1.37ÅAromatic
PO5'sing1.61Å1.63Å
O5'C5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.52Å
C4'O4'sing1.44Å1.44Å
C4'C3'sing1.54Å1.53Å
C3'O3'sing1.44Å1.41Å
C3'C2'sing1.56Å1.51Å
C2'O2'sing1.44Å1.42Å
N9C1'sing1.46Å1.48Å
O4'C1'sing1.44Å1.41Å
C2'C1'sing1.54Å1.52Å
CE1Fsing1.35Å1.35Å
CBO1sing1.44Å1.45Å
CD2Bsing1.55Å1.51Å
O3'Bsing1.37Å1.51Å
O2'Bsing1.37Å1.51Å
O1Bsing1.37Å1.57Å
CBHBC1sing1.09Å1.10Å
CBHBC2sing1.09Å1.10Å
CD1HD1sing1.08Å1.08Å
CE2HE2sing1.08Å1.08Å
CZHZsing1.08Å1.08Å
O1PH1Psing0.97Å0.95Å
O2PH2Psing0.97Å0.95Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
N6H6N1sing0.97Å1.00Å
N6H6N2sing0.97Å1.00Å
C2H2sing1.08Å1.08Å
C5'H5'1sing1.09Å1.10Å
C5'H5'2sing1.09Å1.10Å
C4'H4'sing1.09Å1.10Å
C3'H3'sing1.09Å1.10Å
C2'H2'sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CBCGCD1125.3°133.6°
CBCGCD2112.0°106.4°
CGCBO1100.7°106.6°
CGCBHBC1112.5°110.0°
CGCBHBC2114.3°110.0°
CD1CGCD2122.6°120.1°
CGCD1CE1118.3°119.8°
CGCD1HD1120.8°120.1°
CGCD2CE2119.4°120.1°
CGCD2B114.1°106.0°
CD1CE1CZ119.8°120.0°
CD1CE1F117.9°120.0°
CE1CD1HD1120.8°120.0°
CD2CE2CZ119.1°119.9°
CE2CD2B126.4°133.9°
CD2CE2HE2120.5°120.1°
CE1CZCE2120.8°120.1°
CZCE1F122.3°120.0°
CE1CZHZ119.6°120.0°
CZCE2HE2120.5°120.1°
CE2CZHZ119.6°120.0°
O1PPO2P110.9°109.4°
O1PPO3P113.3°109.5°
O1PPO5'102.1°109.5°
PO1PH1P109.5°114.0°
O2PPO3P120.0°109.5°
O2PPO5'102.3°109.5°
PO2PH2P109.5°114.0°
O3PPO5'105.7°109.5°
N9C8N7109.2°110.0°
C8N9C4108.9°107.4°
C8N9C1'128.0°126.3°
N9C8H8125.4°125.0°
C8N7C5106.3°109.4°
N7C8H8125.4°125.0°
N7C5C6132.2°134.7°
N7C5C4109.3°107.1°
C5C6N6117.2°120.9°
C5C6N1120.0°118.4°
C6C5C4118.6°118.2°
N6C6N1122.8°120.7°
C6N6H6N1109.5°119.9°
C6N6H6N2109.5°120.0°
C6N1C2120.1°121.2°
N1C2N3121.0°122.5°
N1C2H2119.5°118.7°
C2N3C4119.8°120.6°
N3C2H2119.5°118.8°
N9C4C5106.4°106.1°
N9C4N3133.1°134.9°
C4N9C1'123.1°126.3°
C5C4N3120.5°119.1°
PO5'C5'118.9°123.0°
O5'C5'C4'110.7°109.5°
O5'C5'H5'1109.1°109.5°
O5'C5'H5'2108.8°109.5°
C5'C4'O4'108.2°110.3°
C5'C4'C3'112.0°110.3°
C4'C5'H5'1109.1°109.5°
C4'C5'H5'2108.8°109.5°
C5'C4'H4'108.5°110.3°
O4'C4'C3'109.2°104.9°
C4'O4'C1'110.0°105.3°
O4'C4'H4'111.4°110.4°
C4'C3'O3'112.6°108.6°
C4'C3'C2'101.3°103.8°
C3'C4'H4'107.6°110.5°
C4'C3'H3'112.1°113.2°
O3'C3'C2'107.0°103.1°
C3'O3'B109.7°105.1°
O3'C3'H3'106.8°113.2°
C3'C2'O2'104.6°103.1°
C3'C2'C1'106.6°103.8°
C2'C3'H3'117.2°114.1°
C3'C2'H2'115.1°113.4°
O2'C2'C1'111.8°108.6°
C2'O2'B110.1°105.1°
O2'C2'H2'110.3°113.2°
N9C1'O4'114.5°110.4°
N9C1'C2'108.9°110.3°
N9C1'H1'105.4°110.3°
O4'C1'C2'106.1°105.0°
O4'C1'H1'108.3°110.4°
C2'C1'H1'113.9°110.4°
C1'C2'H2'108.4°113.8°
CBO1B116.3°106.0°
O1CBHBC1112.5°110.1°
O1CBHBC2114.3°110.1°
CD2BO3'122.3°110.6°
CD2BO2'121.8°110.8°
CD2BO196.8°106.6°
O3'BO2'102.6°107.5°
O3'BO1106.4°110.6°
O2'BO1104.4°110.7°
HBC1CBHBC2102.9°110.0°
H6N1N6H6N2109.5°120.1°
H5'1C5'H5'2110.4°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CBCGCD1CD2176.3°179.9°
CBCGCD1CE1179.6°179.9°
CBCGCD2CE2179.4°179.9°
CGCBO1HBC1120.0°119.3°
CGCBO1HBC2123.1°119.3°
CBCGCD2B4.0°0.3°
CGCBO1B1.1°28.8°
CGCBHBC1HBC2123.6°121.3°
CBCGCD1HD10.4°0.2°
CGCD1CE1HD1180.0°180.0°
CD1CGCD2CE23.9°0.0°
CGCD1CE1CZ1.8°0.0°
CGCD1CE1F179.5°180.0°
CD1CGCBO1178.3°162.8°
CD1CGCD2B179.3°179.7°
CD1CGCBHBC158.3°77.9°
CD1CGCBHBC258.7°43.4°
CD2CGCD1CE13.3°0.1°
CGCD2CE2B174.7°179.7°
CGCD2CE2CZ3.0°0.0°
CD2CGCBO11.7°17.3°
CGCD2BO3'118.4°102.8°
CGCD2BO2'107.6°138.2°
CGCD2BO14.1°17.6°
CD2CGCBHBC1118.3°102.1°
CD2CGCBHBC2124.7°136.6°
CD2CGCD1HD1176.7°179.9°
CGCD2CE2HE2177.0°180.0°
CD1CE1CZF177.6°180.0°
CD1CE1CZCE21.1°0.0°
CD1CE1CZHZ178.9°180.0°
CD2CE2CZCE11.7°0.0°
CD2CE2CZHE2180.0°179.9°
CE2CD2BO3'66.6°77.5°
CE2CD2BO2'67.4°41.5°
CE2CD2BO1179.1°162.1°
CD2CE2CZHZ178.3°180.0°
CE1CZCE2HZ180.0°180.0°
CZCE1CD1HD1178.2°179.9°
CE1CZCE2HE2178.3°180.0°
CE2CZCE1F178.7°179.9°
CZCE2CD2B177.7°179.7°
O1PPO2PO3P135.2°120.0°
O1PPO2PO5'108.3°120.0°
O1PPO3PO5'111.0°120.0°
O1PPO5'C5'58.5°65.0°
O1PPO2PH2P22.8°60.0°
O2PPO3PO5'114.8°120.0°
O2PPO5'C5'56.4°175.0°
O2PPO1PH1P147.5°60.0°
O3PPO5'C5'177.2°55.0°
O3PPO1PH1P9.2°180.0°
O3PPO2PH2P158.0°60.0°
N9C8N7H8180.0°179.9°
N9C8N7C50.0°0.0°
C8N9C4C1'178.1°179.8°
C8N9C4C50.5°0.0°
C8N9C4N3178.9°180.0°
C8N9C1'O4'86.8°23.5°
C8N9C1'C2'31.7°92.0°
C8N9C1'H1'154.3°145.7°
C8N7C5C6179.6°180.0°
N7C8N9C40.3°0.1°
C8N7C5C40.3°0.0°
N7C8N9C1'177.6°179.7°
N7C5C6C4179.9°180.0°
N7C5C6N60.0°0.0°
N7C5C6N1179.5°180.0°
N7C5C4N90.5°0.0°
N7C5C4N3179.1°180.0°
C5N7C8H8180.0°180.0°
C5C6N6N1179.5°180.0°
C5C6N1C20.2°0.0°
C6C5C4N9179.4°180.0°
C6C5C4N30.8°0.0°
C5C6N6H6N16.0°0.0°
C5C6N6H6N2114.0°180.0°
N6C6N1C2179.2°180.0°
N6C6C5C4179.9°180.0°
C6N6H6N1H6N2120.0°180.0°
C6N1C2N30.5°0.1°
N1C6C5C40.4°0.0°
N1C6N6H6N1174.5°180.0°
N1C6N6H6N265.4°0.0°
C6N1C2H2179.4°180.0°
N1C2N3H2180.0°179.9°
N1C2N3C40.2°0.1°
C2N3C4N9178.7°180.0°
C2N3C4C50.5°0.1°
N9C4C5N3178.6°180.0°
C4N9C1'O4'95.5°156.7°
C4N9C1'C2'145.9°87.7°
C4N9C8H8179.7°180.0°
C4N9C1'H1'23.4°34.5°
C5C4N9C1'177.6°179.8°
N3C4N9C1'0.8°0.2°
C4N3C2H2179.8°180.0°
PO5'C5'C4'144.7°180.0°
O5'PO1PH1P104.0°60.0°
O5'PO2PH2P85.5°180.0°
PO5'C5'H5'195.3°60.0°
PO5'C5'H5'225.2°60.0°
O5'C5'C4'H5'1120.0°120.0°
O5'C5'C4'H5'2119.5°120.0°
O5'C5'C4'O4'52.8°66.5°
O5'C5'C4'C3'67.6°178.0°
O5'C5'H5'1H5'2119.5°120.0°
O5'C5'C4'H4'173.9°55.7°
C5'C4'O4'C3'122.2°118.8°
C5'C4'O4'H4'119.2°122.2°
C5'C4'C3'H4'119.1°122.2°
C5'C4'C3'O3'107.9°107.7°
C5'C4'C3'C2'138.2°143.1°
C5'C4'O4'C1'125.9°159.7°
C4'C5'H5'1H5'2119.5°120.0°
C5'C4'C3'H3'12.5°18.9°
O4'C4'C3'H4'121.0°118.9°
O4'C4'C3'O3'132.2°133.5°
O4'C4'C3'C2'18.3°24.3°
C4'O4'C1'N9107.4°159.7°
C4'O4'C1'C2'12.7°40.8°
C4'O4'C1'H1'135.4°78.1°
O4'C4'C5'H5'1172.9°53.6°
O4'C4'C5'H5'266.7°173.5°
O4'C4'C3'H3'107.4°100.0°
C4'C3'O3'C2'110.4°109.7°
C4'C3'O3'H3'123.4°126.6°
C4'C3'C2'H3'122.2°123.7°
C4'C3'C2'O2'93.1°113.1°
C3'C4'O4'C1'3.7°40.9°
C4'C3'C2'C1'25.4°0.1°
C4'C3'O3'B92.0°132.6°
C3'C4'C5'H5'152.5°61.9°
C3'C4'C5'H5'2172.9°58.0°
C4'C3'C2'H2'145.7°124.2°
O3'C3'C2'H3'119.8°123.2°
O3'C3'C2'O2'24.9°0.1°
O3'C3'C2'C1'143.5°113.3°
C3'O3'BCD2136.2°161.2°
C3'O3'BO2'5.0°40.1°
C3'O3'BO1114.4°80.9°
O3'C3'C4'H4'11.2°14.5°
O3'C3'C2'H2'96.3°122.7°
C3'C2'O2'C1'115.0°109.7°
C3'C2'O2'H2'124.3°122.9°
C3'C2'C1'N999.1°142.9°
C3'C2'C1'O4'24.6°24.0°
C3'C2'C1'H2'124.5°123.7°
C2'C3'O3'B18.4°23.0°
C3'C2'O2'B22.1°23.1°
C3'C2'C1'H1'143.6°94.9°
C2'C3'C4'H4'102.7°94.7°
O2'C2'C1'N9147.2°107.9°
O2'C2'C1'O4'89.1°133.3°
O2'C2'C1'H2'121.8°127.1°
C2'O2'BCD2152.8°161.1°
C2'O2'BO3'11.3°40.1°
C2'O2'BO199.5°80.8°
O2'C2'C1'H1'29.9°14.3°
O2'C2'C3'H3'144.7°123.2°
N9C1'O4'C2'120.1°118.8°
N9C1'O4'H1'117.2°122.2°
N9C1'C2'H1'117.3°122.2°
C1'N9C8H82.4°0.2°
N9C1'C2'H2'25.4°19.2°
O4'C1'C2'H1'119.0°119.0°
C1'O4'C4'H4'114.9°78.1°
O4'C1'C2'H2'149.1°99.7°
C1'C2'O2'B137.1°132.8°
C1'C2'C3'H3'96.8°123.5°
FCE1CD1HD10.5°0.0°
FCE1CZHZ1.3°0.0°
CBO1BCD23.1°28.3°
CBO1BO3'129.6°92.0°
CBO1BO2'122.2°148.9°
O1CBHBC1HBC2123.5°121.6°
CD2BO3'O2'141.2°121.1°
CD2BO3'O1109.4°117.9°
CD2BO2'O1107.7°118.1°
BCD2CE2HE22.2°0.3°
O3'BO2'O1110.9°120.9°
BO3'C3'H3'144.6°100.8°
BO2'C2'H2'102.2°99.8°
BO1CBHBC1121.1°90.5°
BO1CBHBC2121.9°148.1°
HE2CE2CZHZ1.7°0.0°
H1'C1'C2'H2'91.9°141.4°
H5'1C5'C4'H4'66.1°175.8°
H5'2C5'C4'H4'54.4°64.3°
H4'C4'C3'H3'131.6°141.1°
H3'C3'C2'H2'23.5°0.5°

223532

PDB entries from 2024-08-07

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