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Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
N1C2doub1.32Å1.34ÅAromatic
N1C6sing1.33Å1.34ÅAromatic
C2N3sing1.32Å1.35ÅAromatic
N3C4doub1.33Å1.34ÅAromatic
C4C5sing1.41Å1.48ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
C5C6doub1.40Å1.47ÅAromatic
C5N7sing1.36Å1.33ÅAromatic
C6N6sing1.38Å1.36Å
N7C8doub1.30Å1.35ÅAromatic
C8N9sing1.36Å1.35ÅAromatic
N9C1'sing1.46Å1.48Å
PAO1Adoub1.48Å1.51Å
PAO2Asing1.61Å1.51Å
PAO3Asing1.61Å1.60Å
PAO5'sing1.61Å1.61Å
PBO1Bdoub1.48Å1.51Å
PBO2Bsing1.61Å1.53Å
PBO3Asing1.61Å1.58Å
PBN3Bsing1.68Å1.76Å
PGO1Gsing1.61Å1.52Å
PGO2Gdoub1.48Å1.51Å
PGN3Bsing1.68Å1.73Å
PGO3Gsing1.61Å1.54Å
C1'C2'sing1.54Å1.50Å
C1'O4'sing1.44Å1.39Å
C2'O2'sing1.43Å1.41Å
C2'C3'sing1.55Å1.52Å
C3'O3'sing1.43Å1.42Å
C3'C4'sing1.54Å1.52Å
C4'O4'sing1.44Å1.42Å
C4'C5'sing1.53Å1.51Å
C5'O5'sing1.43Å1.44Å
C2H2sing1.08Å1.08Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8H8sing1.08Å1.08Å
C1'H1'sing1.09Å1.10Å
O1GHO1Gsing0.97Å0.95Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2AHO2Asing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
N3BHN3Bsing1.01Å1.00Å
O3GHO3Gsing0.97Å0.95Å
C4'H4'sing1.09Å1.10Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2N1C6122.2°121.2°
N1C2N3125.2°122.5°
N1C2H2117.4°118.8°
N1C6C5116.3°118.5°
N1C6N6122.0°120.7°
C2N3C4119.2°120.6°
N3C2H2117.4°118.7°
N3C4C5118.8°119.0°
N3C4N9135.1°134.9°
C5C4N9106.1°106.0°
C4C5C6118.4°118.2°
C4C5N7107.5°107.1°
C4N9C8107.3°107.4°
C4N9C1'133.6°126.3°
C6C5N7134.1°134.7°
C5C6N6121.7°120.8°
C5N7C8105.9°109.4°
C6N6HN6109.5°120.0°
C6N6HN6A109.4°120.0°
N7C8N9113.1°110.0°
N7C8H8123.4°125.0°
C8N9C1'119.0°126.3°
N9C8H8123.4°125.0°
N9C1'C2'129.8°110.4°
N9C1'O4'115.7°110.4°
N9C1'H1'83.5°110.3°
O1APAO2A125.0°109.5°
O1APAO3A111.3°109.5°
O1APAO5'105.8°109.4°
O2APAO3A104.5°109.5°
O2APAO5'107.6°109.5°
PAO2AHO2A109.5°114.0°
O3APAO5'99.7°109.5°
PAO3APB126.2°134.0°
PAO5'C5'124.2°123.0°
O1BPBO2B119.0°109.5°
O1BPBO3A98.4°109.5°
O1BPBN3B108.5°109.5°
O2BPBO3A112.4°109.5°
O2BPBN3B110.6°109.5°
PBO2BHO2B109.5°114.0°
O3APBN3B106.9°109.5°
PBN3BPG126.7°111.0°
PBN3BHN3B104.1°111.0°
O1GPGO2G109.5°109.5°
O1GPGN3B107.2°109.5°
O1GPGO3G119.4°109.4°
PGO1GHO1G109.5°114.0°
O2GPGN3B106.8°109.5°
O2GPGO3G115.8°109.5°
N3BPGO3G96.2°109.5°
PGN3BHN3B104.1°111.0°
PGO3GHO3G109.5°114.0°
C2'C1'O4'102.3°104.8°
C1'C2'O2'109.7°110.5°
C1'C2'C3'95.8°104.0°
C2'C1'H1'102.9°110.4°
C1'C2'H2'117.0°110.5°
C1'O4'C4'91.2°105.2°
O4'C1'H1'122.8°110.4°
O2'C2'C3'107.1°110.5°
O2'C2'H2'107.3°110.5°
C2'O2'HO2'109.5°114.0°
C2'C3'O3'109.8°110.5°
C2'C3'C4'102.4°104.1°
C3'C2'H2'119.2°110.6°
C2'C3'H3'112.8°110.5°
O3'C3'C4'106.6°110.5°
O3'C3'H3'109.0°110.5°
C3'O3'HO3'109.5°114.0°
C3'C4'O4'101.2°104.8°
C3'C4'C5'119.5°110.3°
C4'C3'H3'115.7°110.7°
C3'C4'H4'109.8°110.4°
O4'C4'C5'112.6°110.3°
O4'C4'H4'117.1°110.4°
C4'C5'O5'106.4°109.4°
C5'C4'H4'97.6°110.4°
C4'C5'H5'110.5°109.5°
C4'C5'H5'A110.5°109.4°
O5'C5'H5'110.5°109.5°
O5'C5'H5'A110.5°109.5°
HN6N6HN6A109.5°120.0°
H5'C5'H5'A108.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2N3H2180.0°180.0°
N1C2N3C40.1°0.0°
C2N1C6C50.9°0.0°
C2N1C6N6179.4°180.0°
C6N1C2N30.4°0.0°
N1C6C5C41.0°0.0°
N1C6C5N6179.7°180.0°
N1C6C5N7179.7°180.0°
C6N1C2H2179.6°180.0°
N1C6N6HN60.0°0.0°
N1C6N6HN6A120.0°180.0°
C2N3C4C50.3°0.0°
C2N3C4N9179.8°179.9°
N3C4C5N9179.9°180.0°
N3C4C5C60.8°0.0°
N3C4C5N7179.8°180.0°
N3C4N9C8179.9°179.9°
N3C4N9C1'2.9°0.0°
C4N3C2H2179.9°180.0°
C4C5C6N7178.7°179.9°
C4C5C6N6179.3°180.0°
C4C5N7C80.5°0.0°
C5C4N9C80.0°0.0°
C5C4N9C1'176.9°180.0°
N9C4C5C6179.3°180.0°
N9C4C5N70.3°0.0°
C4N9C8N70.3°0.0°
C4N9C8C1'177.5°180.0°
C4N9C1'C2'16.7°85.0°
C4N9C1'O4'118.4°159.6°
C4N9C8H8179.7°179.9°
C4N9C1'H1'118.2°37.2°
C6C5N7C8179.3°179.9°
C5C6N6HN6179.7°180.0°
C5C6N6HN6A60.3°0.1°
N7C5C6N60.6°0.1°
C5N7C8N90.5°0.0°
C5N7C8H8179.5°179.9°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°179.9°
N7C8N9C1'177.8°180.0°
C8N9C1'C2'159.9°95.0°
C8N9C1'O4'64.9°20.4°
C8N9C1'H1'58.5°142.8°
N9C1'C2'O4'139.4°118.9°
N9C1'C2'H1'92.3°122.2°
N9C1'O4'H1'99.3°122.3°
N9C1'C2'O2'62.6°98.5°
N9C1'C2'C3'173.2°142.8°
N9C1'O4'C4'146.2°159.4°
C1'N9C8H82.2°0.1°
N9C1'C2'H2'59.8°24.1°
O1APAO2AO3A129.8°120.1°
O1APAO2AO5'124.8°120.0°
O1APAO3AO5'111.3°120.0°
O1APAO3APB48.8°45.0°
O1APAO5'C5'86.1°55.0°
O1APAO2AHO2A0.0°179.9°
O2APAO3AO5'111.1°120.0°
O2APAO3APB88.7°75.1°
O2APAO5'C5'138.2°65.0°
PAO3APBO1B176.6°60.0°
PAO3APBO2B50.4°60.0°
PAO3APBN3B71.1°180.0°
O3APAO5'C5'29.5°175.0°
O3APAO2AHO2A129.8°60.0°
O5'PAO3APB160.2°165.0°
PAO5'C5'C4'95.0°180.0°
O5'PAO2AHO2A124.8°60.0°
PAO5'C5'H5'145.0°60.0°
PAO5'C5'H5'A25.0°60.0°
O1BPBO2BO3A114.1°120.0°
O1BPBO2BN3B126.5°120.0°
O1BPBO3AN3B112.3°120.0°
O1BPBN3BPG153.4°60.0°
O1BPBO2BHO2B0.0°180.0°
O1BPBN3BHN3B86.6°176.1°
O2BPBO3AN3B121.5°120.0°
O2BPBN3BPG21.3°60.0°
O2BPBN3BHN3B141.3°63.9°
O3APBN3BPG101.4°180.0°
O3APBO2BHO2B114.2°60.0°
O3APBN3BHN3B18.6°56.1°
PBN3BPGO1G24.2°60.0°
PBN3BPGO2G93.0°60.0°
PBN3BPGHN3B120.0°123.9°
PBN3BPGO3G147.7°180.0°
N3BPBO2BHO2B126.5°60.0°
O1GPGO2GN3B115.7°120.0°
O1GPGO2GO3G138.5°120.0°
O1GPGN3BO3G123.5°120.0°
O1GPGN3BHN3B95.8°176.0°
O1GPGO3GHO3G134.2°60.0°
O2GPGN3BO3G119.3°120.0°
O2GPGO1GHO1G0.0°180.0°
O2GPGN3BHN3B147.0°63.9°
O2GPGO3GHO3G0.0°60.0°
N3BPGO1GHO1G115.5°60.0°
N3BPGO3GHO3G112.0°180.0°
O3GPGO1GHO1G136.8°60.0°
O3GPGN3BHN3B27.7°56.1°
C2'C1'O4'H1'114.4°118.9°
C1'C2'O2'C3'102.9°114.6°
C1'C2'O2'H2'128.1°122.6°
C1'C2'C3'H2'125.4°118.6°
C1'C2'C3'O3'104.5°118.7°
C1'C2'C3'C4'8.5°0.1°
C2'C1'O4'C4'67.4°40.5°
C1'C2'O2'HO2'180.0°179.9°
C1'C2'C3'H3'133.7°118.8°
O4'C1'C2'O2'158.0°142.6°
O4'C1'C2'C3'47.4°23.9°
C1'O4'C4'C3'58.3°40.5°
C1'O4'C4'C5'172.9°159.3°
O4'C1'C2'H2'79.6°94.8°
C1'O4'C4'H4'60.9°78.4°
O2'C2'C3'H2'121.9°122.7°
O2'C2'C3'O3'8.2°0.0°
O2'C2'C3'C4'121.2°118.6°
O2'C2'C1'H1'29.7°23.7°
O2'C2'C3'H3'113.6°122.6°
C2'C3'O3'C4'110.2°114.6°
C2'C3'O3'H3'124.1°122.6°
C2'C3'C4'H3'123.2°118.7°
C2'C3'C4'O4'30.6°24.0°
C2'C3'C4'C5'154.8°142.8°
C3'C2'C1'H1'80.8°95.0°
C3'C2'O2'HO2'77.1°65.3°
C2'C3'O3'HO3'180.0°61.5°
C2'C3'C4'H4'93.7°94.9°
O3'C3'C4'H3'121.4°122.7°
O3'C3'C4'O4'146.0°142.6°
O3'C3'C4'C5'89.8°98.6°
O3'C3'C2'H2'130.1°122.7°
O3'C3'C4'H4'21.6°23.7°
C3'C4'O4'C5'128.8°118.8°
C3'C4'O4'H4'119.2°118.9°
C3'C4'C5'H4'117.9°122.3°
C3'C4'C5'O5'177.0°175.0°
C4'C3'C2'H2'116.9°118.7°
C4'C3'O3'HO3'69.7°176.1°
C3'C4'C5'H5'57.0°65.0°
C3'C4'C5'H5'A63.0°55.1°
O4'C4'C5'H4'123.6°122.3°
O4'C4'C5'O5'58.5°69.6°
C4'O4'C1'H1'47.0°78.4°
O4'C4'C3'H3'92.6°94.6°
O4'C4'C5'H5'61.5°50.4°
O4'C4'C5'H5'A178.5°170.4°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C5'C4'C3'H3'31.6°24.1°
C4'C5'H5'H5'A121.2°120.0°
O5'C5'C4'H4'65.1°52.7°
O5'C5'H5'H5'A121.3°120.0°
H1'C1'C2'H2'152.2°146.3°
H2'C2'O2'HO2'51.9°57.5°
H2'C2'C3'H3'8.3°0.1°
H3'C3'O3'HO3'55.9°61.1°
H3'C3'C4'H4'143.1°146.5°
H4'C4'C5'H5'174.9°172.7°
H4'C4'C5'H5'A55.0°67.3°

248636

PDB entries from 2026-02-04

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